TCONS_00066106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066106
Unique NameTCONS_00066106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066106 ID=TCONS_00066106|Name=TCONS_00066106|organism=Clytia hemisphaerica|type=transcript|length=1838bp
caattttttaacaattaatttatttttgatcaattcTGATGTGCTTGAAT
GGAAATGGAACATTATTTAAACTTGCTGTAAAAAAGCTCTGAGACGCATT
TTGTGAGGCGTAGTAGATGTAGTAGCAACGATCACATATTCATGTATAAA
AAAAGTAGAAGAAAAGGGGAAACAGTTTTCGTATCGTTCAACTAATTGGT
ATAGTTCTAAAGAACTTTCAAAGTGCTCATTTTATGAAGTCTGGTTTTAC
ATTTATTTTCAAGAGGGAAGCTTAATTTCAATCAAAGAAGAACTTTGTAC
CAACAGCGATAAAAAACGGTTCAACGAAGAGGGCGATCtcgcttataaaa
aaaccattTACTTAAAAATAAGATAATTGGAAAAAGGTTGTACAATCTTC
ACAACTTgtcaacagaaaaaaaaaattatatcgtCACATCACACACatta
aataaagaaattgtTAATTTTAACAAATTGCTAAGACACTCGTATCTCGT
TACATCGATCAAGAGGGAAATTGATATTTTGATTGAGGGACCAACGTTTT
TTAAACTgtaataaaaacattaaaagttatggaaGACGTGACAACATCAT
CAGCTTATGCACCGCTAACTTCATCTGGAgctaacaaaatgtttttttct
gatatcCTAAATGGCGATTTCTCAGTACAAAACATATTTAGTATAGCATT
TGATTCAAGTTCCGACTTCGATGCGCTACATTCACCATGTTCAACAGTCA
CCTCAACCACAAGTGAAAGTGATCTCGACATTATACCGTCACCGATATAC
CGACATCCACCACCTTTAATCACCGACGTCGGATGTTCCTCAAACTCTAT
ATGCTCTTCAAACTCTATATGCAAACAAGAACAATATTATTTACCGACTC
CGTCACCACCGATGCCGTCGCAATCCGATTACGACGTCGTCGTCCCGATG
CCGTTTATCAAGAAACAAGAAACGACAGAATCTCGATTCAGTTGTAATAT
TTGCGGCAAGTACTTCAAGCGAATGTCCTCTTTATCTACTCACCGCCTAA
TCCACACGAACATTAAACCTTACCAATGTACCAAATGCGATAAATCATTT
CTAAGAAAATCAGACTTGAAAAAACACGATATGATGCACAGCGGACAAAA
ACCACATCAATGTGAAATTTGCGGTAAACTATTCAGCCAATCTTCAAATA
TGTTAACCCATTTAAGACGGCACTCTGGAGTCAAACCTTTCGCTTGTAAA
ATTTGCGGACGTGCTTTTTACCGTAAAGTTGATGTTAGGAGACATACTTT
ACGTCACAAGGAACAGGGACTTGTTCATTAGAATTGATTTATGATCAAAT
TTTATATACAATAATCCTACTAACCAAATTAATTAAACTTTTGGTTCTTA
TTTCTCATGTTCGATATATGATGCTCTTTTTAAGATAAAGgtgcttaaat
ttttgagtctttgaaaaattttgagaaactcCAGTTCTTTTCAAGTTGGT
TAAATTTTCTATATCGATGTTGAAACTTTTGTAACAAAAGTATTATAAAA
TATTATCCAGCcattttaaaaaggttttgaaatatttttttcttgaatat
tttaaattgtACATAGGAAAAACATAAGCGTtgtaaaaaaagtgaaagaa
tttTTCCCCTCCAAAACAATTTgtacatatattatatatatttgaagaaa
atatgtTAAAGTGAAAGAAAGGGTCTGGATCCCTTTTCCAatagatttat
attttttgaagaaaagttgttatttttttcatattaaCGATTATTTCTTT
TGCAAGTCAAATAGAAATATACTAATAACCAAGagtgt
Run BLAST on NCBI

protein sequence of TCONS_00066106-protein

>TCONS_00066106-protein ID=TCONS_00066106-protein|Name=TCONS_00066106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MEDVTTSSAYAPLTSSGANKMFFSDILNGDFSVQNIFSIAFDSSSDFDAL
HSPCSTVTSTTSESDLDIIPSPIYRHPPPLITDVGCSSNSICSSNSICKQ
EQYYLPTPSPPMPSQSDYDVVVPMPFIKKQETTESRFSCNICGKYFKRMS
SLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGK
LFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRHKEQGLVH
Run BLAST on NCBI

transcript from alignment at scaffold_450:195457..197581+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066106 ID=TCONS_00066106|Name=TCONS_00066106|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at scaffold_450:195457..197581+ (Clytia hemisphaerica)
caattttttaacaattaatttatttttgatcaattcTGATGTGCTTGAAT
GGAAATGGAACATTATTTAAACTTGCTGTAAAAAAGCTCTGAGACGCATT
TTGTGAGGCGTAGTAGATGTAGTAGCAACGATCACATATTCATGTATAAA
AAAAGTAGAAGAAAAGGGGAAACAGTTTTCGTATCGTTCAACTAATTGGT
ATAGTTCTAAAGAACTTTCAAAGTGCTCATTTTATGAAGTCTGGTTTTAC
ATTTATTTTCAAGAGGGAAGCTTAATTTCAATCAAAGAAGAACTTTGTAC
CAACAGCGATAAAAAACGGTTCAACGAAGAGGGCGATCtcgcttataaaa
aaaccattTACTTAAAAATAAGATAATTGGAAAAAGGTTGTACAATCTTC
ACAACTTgtcaacagaaaaaaaaaattatatcgtCACATCACACACatta
aataaagaaattgtTAATTTTAACAAATTGCTAAGACACTCGTATCTCGT
TACATCGATCAAGAGGGAAATTGATATTTTGATTGAGGGACCAACGTTTT
TTAAACTgtaataaaaacattaaaagttatggaaGACGTGACAACATCAT
CAGCTTATGCACCGCTAACTTCATCTGGAgctaacaaaatgtttttttct
gatatcCTAAATGGCGATTTCTCAGTACAAAACATATTTAGTATAGCATT
TGGTAAGtttctgaaaataattttccattCATATCAAGCACacagaaaat
tttacttttctcGGGGTTTcagcttttattttttctttcgcATGATTCAA
ATggccaaaattgaaaaatgaaaaattactttctttttattgataTAAAA
TGCAATTCCGtttaaatattttatatattattttttcttatttttttaca
gATTCAAGTTCCGACTTCGATGCGCTACATTCACCATGTTCAACAGTCAC
CTCAACCACAAGTGAAAGTGATCTCGACATTATACCGTCACCGATATACC
GACATCCACCACCTTTAATCACCGACGTCGGATGTTCCTCAAACTCTATA
TGCTCTTCAAACTCTATATGCAAACAAGAACAATATTATTTACCGACTCC
GTCACCACCGATGCCGTCGCAATCCGATTACGACGTCGTCGTCCCGATGC
CGTTTATCAAGAAACAAGAAACGACAGAATCTCGATTCAGTTGTAATATT
TGCGGCAAGTACTTCAAGCGAATGTCCTCTTTATCTACTCACCGCCTAAT
CCACACGAACATTAAACCTTACCAATGTACCAAATGCGATAAATCATTTC
TAAGAAAATCAGACTTGAAAAAACACGATATGATGCACAGCGGACAAAAA
CCACATCAATGTGAAATTTGCGGTAAACTATTCAGCCAATCTTCAAATAT
GTTAACCCATTTAAGACGGCACTCTGGAGTCAAACCTTTCGCTTGTAAAA
TTTGCGGACGTGCTTTTTACCGTAAAGTTGATGTTAGGAGACATACTTTA
CGTCACAAGGAACAGGGACTTGTTCATTAGAATTGATTTATGATCAAATT
TTATATACAATAATCCTACTAACCAAATTAATTAAACTTTTGGTTCTTAT
TTCTCATGTTCGATATATGATGCTCTTTTTAAGATAAAGgtgcttaaatt
tttgagtctttgaaaaattttgagaaactcCAGTTCTTTTTACGTTGGTT
AAATTTTCTATAANTTTTAAGATTAAGgtgcttaaatttttgagtctttg
aaaaattttgagaaactcCAGTTCTTTTCAAGTTGGTTAAATTTTCTATA
TCGATGTTGAAACTTTTGTAACAAAAGTATTATAAAATATTATCCAGCca
ttttaaaaaggttttgaaatatttttttcttgaatattttaaattgtACA
TAGGAAAAACATAAGCGTtgtaaaaaaagtgaaagaatttTTCCCCTCCA
AAACAATTTgtacatatattatatatatttgaagaaaatatgtTAAAGTG
AAAGAAAGGGTCTGGATCCCTTTTCCAatagatttatattttttgaagaa
aagttgttatttttttcatattaaCGATTATTTCTTTTGCAAGTCAAATA
GAAATATACTAATAACCAAGagtgt

Coding sequence (CDS) from alignment at scaffold_450:195457..197581+

>TCONS_00066106 ID=TCONS_00066106|Name=TCONS_00066106|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_450:195457..197581+ (Clytia hemisphaerica)
atggaaGACGTGACAACATCATCAGCTTATGCACCGCTAACTTCATCTGG
AgctaacaaaatgtttttttctgatatcCTAAATGGCGATTTCTCAGTAC
AAAACATATTTAGTATAGCATTTGATTCAAGTTCCGACTTCGATGCGCTA
CATTCACCATGTTCAACAGTCACCTCAACCACAAGTGAAAGTGATCTCGA
CATTATACCGTCACCGATATACCGACATCCACCACCTTTAATCACCGACG
TCGGATGTTCCTCAAACTCTATATGCTCTTCAAACTCTATATGCAAACAA
GAACAATATTATTTACCGACTCCGTCACCACCGATGCCGTCGCAATCCGA
TTACGACGTCGTCGTCCCGATGCCGTTTATCAAGAAACAAGAAACGACAG
AATCTCGATTCAGTTGTAATATTTGCGGCAAGTACTTCAAGCGAATGTCC
TCTTTATCTACTCACCGCCTAATCCACACGAACATTAAACCTTACCAATG
TACCAAATGCGATAAATCATTTCTAAGAAAATCAGACTTGAAAAAACACG
ATATGATGCACAGCGGACAAAAACCACATCAATGTGAAATTTGCGGTAAA
CTATTCAGCCAATCTTCAAATATGTTAACCCATTTAAGACGGCACTCTGG
AGTCAAACCTTTCGCTTGTAAAATTTGCGGACGTGCTTTTTACCGTAAAG
TTGATGTTAGGAGACATACTTTACGTCACAAGGAACAGGGACTTGTTCAT
TAGatggaaGACGTGACAACATCATCAGCTTATGCACCGCTAACTTCATC
TGGAgctaacaaaatgtttttttctgatatcCTAAATGGCGATTTCTCAG
TACAAAACATATTTAGTATAGCATTTGATTCAAGTTCCGACTTCGATGCG
CTACATTCACCATGTTCAACAGTCACCTCAACCACAAGTGAAAGTGATCT
CGACATTATACCGTCACCGATATACCGACATCCACCACCTTTAATCACCG
ACGTCGGATGTTCCTCAAACTCTATATGCTCTTCAAACTCTATATGCAAA
CAAGAACAATATTATTTACCGACTCCGTCACCACCGATGCCGTCGCAATC
CGATTACGACGTCGTCGTCCCGATGCCGTTTATCAAGAAACAAGAAACGA
CAGAATCTCGATTCAGTTGTAATATTTGCGGCAAGTACTTCAAGCGAATG
TCCTCTTTATCTACTCACCGCCTAATCCACACGAACATTAAACCTTACCA
ATGTACCAAATGCGATAAATCATTTCTAAGAAAATCAGACTTGAAAAAAC
ACGATATGATGCACAGCGGACAAAAACCACATCAATGTGAAATTTGCGGT
AAACTATTCAGCCAATCTTCAAATATGTTAACCCATTTAAGACGGCACTC
TGGAGTCAAACCTTTCGCTTGTAAAATTTGCGGACGTGCTTTTTACCGTA
AAGTTGATGTTAGGAGACATACTTTACGTCACAAGGAACAGGGACTTGTT
CATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041383XLOC_041383Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066106-proteinTCONS_00066106-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066106-exon-scaffold_450-1491911889:195457..196158TCONS_00066106-exon-scaffold_450-1491911889:195457..196158Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1510915933:195457..196158TCONS_00066106-exon-scaffold_450-1510915933:195457..196158Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1575043694:195457..196158TCONS_00066106-exon-scaffold_450-1575043694:195457..196158Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1491911889:196358..197095TCONS_00066106-exon-scaffold_450-1491911889:196358..197095Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1510915933:196358..197095TCONS_00066106-exon-scaffold_450-1510915933:196358..197095Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1575043694:196358..197095TCONS_00066106-exon-scaffold_450-1575043694:196358..197095Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1491911889:197184..197581TCONS_00066106-exon-scaffold_450-1491911889:197184..197581Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1510915933:197184..197581TCONS_00066106-exon-scaffold_450-1510915933:197184..197581Clytia hemisphaericaexon
TCONS_00066106-exon-scaffold_450-1575043694:197184..197581TCONS_00066106-exon-scaffold_450-1575043694:197184..197581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:195457..197581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.7797	28.0339	4.98114	1.83351	281.98	191.981	116.024	129.954	73.2963	245.153	115.945	84.8439	5.43385	3.4561	2.11861	1.34744	8.23553	8.66714	20.0427	8.62455	12.2214	11.0231	56.6913	53.8632	8.93557	10.4614	55.3511	47.4281	31.678	33.5563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00066106 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 9.081e-40
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 3 
Query:  960 KKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRHKEQGL 1322
            K   + E  F C ICGK FKR S+LSTH LIH++ +PY C  C K F +KSD+KKH  +H+G+KPH+C++CGK FSQSSN++TH R+H+G KPF C +CG+ F RKVD+RRH  R  + GL
Sbjct:  303 KAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH--RETQHGL 421

HSP 2 Score: 94.7449 bits (234), Expect = 1.216e-20
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 3 
Query:  957 IKKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRH 1307
            +++  +    F+C +CGK F    SL  H+ +H+  + + C  C KSF R S L  H ++HS  +P+ C+ CGK F Q S+M  H   H+G KP  C++CG+AF +  ++  H+ +H
Sbjct:  274 VRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 390
The following BLAST results are available for this feature:
BLAST of TCONS_00066106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI19.081e-4056.20Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 ... [more]
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