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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066105 ID=TCONS_00066105|Name=TCONS_00066105|organism=Clytia hemisphaerica|type=transcript|length=1573bp
AGTATCATTCGAACACTTTTACGAGCTGGACATCTCACTACAGCTGTGAA
AATTCTATAAGTTGCAACAGTAGGAGCTgagaattttcatttatttgaga
aaaagaagATATTTTATATTAAACGGATATACaactcaaaaatgccaaaa
gttTTCTTAGTACGAAAATATAGTTATCGGCATTATCATGAGAAGCCGAT
AGCGCAACGGGAGACTAAAAATGAGCCTGACGACTGCGCGTTTCATGAAG
ACCAACAGCATACAGTCTATTTTGACAGTTACGAACGACGTTTGGTTGCT
AGGCGACGAGAATGGATAGAAACAGCAAAACAAAGATATACATCGTACGA
TTCAAGTTCCGACTTCGATGCGCTACATTCACCATGTTCAACAGTCACCT
CAACCACAAGTGAAAGTGATCTCGACATTATACCGTCACCGATATACCGA
CATCCACCACCTTTAATCACCGACGTCGGATGTTCCTCAAACTCTATATG
CTCTTCAAACTCTATATGCAAACAAGAACAATATTATTTACCGACTCCGT
CACCACCGATGCCGTCGCAATCCGATTACGACGTCGTCGTCCCGATGCCG
TTTATCAAGAAACAAGAAACGACAGAATCTCGATTCAGTTGTAATATTTG
CGGCAAGTACTTCAAGCGAATGTCCTCTTTATCTACTCACCGCCTAATCC
ACACGAACATTAAACCTTACCAATGTACCAAATGCGATAAATCATTTCTA
AGAAAATCAGACTTGAAAAAACACGATATGATGCACAGCGGACAAAAACC
ACATCAATGTGAAATTTGCGGTAAACTATTCAGCCAATCTTCAAATATGT
TAACCCATTTAAGACGGCACTCTGGAGTCAAACCTTTCGCTTGTAAAATT
TGCGGACGTGCTTTTTACCGTAAAGTTGATGTTAGGAGACATACTTTACG
TCACAAGGAACAGGGACTTGTTCATTAGAATTGATTTATGATCAAATTTT
ATATACAATAATCCTACTAACCAAATTAATTAAACTTTTGGTTCTTATTT
CTCATGTTCGATATATGATGCTCTTTTTAAGATAAAGgtgcttaaatttt
tgagtctttgaaaaattttgagaaactcCAGTTCTTTTTACGTTGGTTAA
ATTTTCTATAANTTTTAAGATTAAGgtgcttaaatttttgagtctttgaa
aaattttgagaaactcCAGTTCTTTTCAAGTTGGTTAAATTTTCTATATC
GATGTTGAAACTTTTGTAACAAAAGTATTATAAAATATTATCCAGCcatt
ttaaaaaggttttgaaatatttttttcttgaatattttaaattgtACATA
GGAAAAACATAAGCGTtgtaaaaaaagtgaaagaatttTTCCCCTCCAAA
ACAATTTgtacatatattatatatatttgaagaaaatatgtTAAAGTGAA
AGAAAGGGTCTGGATCCCTTTTCCAatagatttatattttttgaagaaaa
gttgttatttttttcatattaaCGATTATTTCTTTTGCAAGTCAAATAGA
AATATACTAATAACCAAGagtgt Run BLAST on NCBI transcript from alignment at scaffold_450:194987..197581+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066105 ID=TCONS_00066105|Name=TCONS_00066105|organism=Clytia hemisphaerica|type=transcript|length=2595bp|location=Sequence derived from alignment at scaffold_450:194987..197581+ (Clytia hemisphaerica)
AGTATCATTCGAACACTTTTACGAGCTGGACATCTCACTACAGCTGTGAA
AATTCTATAAGTTGCAACAGTAGGAGCTgagaattttcatttatttgaga
aaaagaagATATTTTATATTAAACGGATATACaactcaaaaatgccaaaa
gttTTCTTAGTACGAAAATATAGTTATCGGCATTATCATGAGAAGCCGAT
AGCGCAACGGGAGACTAAAAATGAGCCTGACGACTGCGCGTTTCATGAAG
ACCAACAGCATACAGTCTATTTTGACAGTTACGAACGACGTTTGGTTGCT
AGGCGACGAGAATGGATAGAAACAGCAAAACAAAGATATACATCGTACGG
TAAGTCggtcgattttttttttcattcaattcaaCTCCCTCTCTCGGGAA
TTCtcaatacaaaaaaaatcatattatgATCATGAATGAATtcatattat
ataaaaataagaaagagaatcaattttttaacaattaatttatttttgat
caattcTGATGTGCTTGAATGGAAATGGAACATTATTTAAACTTGCTGTA
AAAAAGCTCTGAGACGCATTTTGTGAGGCGTAGTAGATGTAGTAGCAACG
ATCACATATTCATGTATAAAAAAAGTAGAAGAAAAGGGGAAACAGTTTTC
GTATCGTTCAACTAATTGGTATAGTTCTAAAGAACTTTCAAAGTGCTCAT
TTTATGAAGTCTGGTTTTACATTTATTTTCAAGAGGGAAGCTTAATTTCA
ATCAAAGAAGAACTTTGTACCAACAGCGATAAAAAACGGTTCAACGAAGA
GGGCGATCtcgcttataaaaaaaccattTACTTAAAAATAAGATAATTGG
AAAAAGGTTGTACAATCTTCACAACTTgtcaacagaaaaaaaaaattata
tcgtCACATCACACACattaaataaagaaattgtTAATTTTAACAAATTG
CTAAGACACTCGTATCTCGTTACATCGATCAAGAGGGAAATTGATATTTT
GATTGAGGGACCAACGTTTTTTAAACTgtaataaaaacattaaaagttat
ggaaGACGTGACAACATCATCAGCTTATGCACCGCTAACTTCATCTGGAg
ctaacaaaatgtttttttctgatatcCTAAATGGCGATTTCTCAGTACAA
AACATATTTAGTATAGCATTTGGTAAGtttctgaaaataattttccattC
ATATCAAGCACacagaaaattttacttttctcGGGGTTTcagcttttatt
ttttctttcgcATGATTCAAATggccaaaattgaaaaatgaaaaattact
ttctttttattgataTAAAATGCAATTCCGtttaaatattttatatatta
ttttttcttatttttttacagATTCAAGTTCCGACTTCGATGCGCTACAT
TCACCATGTTCAACAGTCACCTCAACCACAAGTGAAAGTGATCTCGACAT
TATACCGTCACCGATATACCGACATCCACCACCTTTAATCACCGACGTCG
GATGTTCCTCAAACTCTATATGCTCTTCAAACTCTATATGCAAACAAGAA
CAATATTATTTACCGACTCCGTCACCACCGATGCCGTCGCAATCCGATTA
CGACGTCGTCGTCCCGATGCCGTTTATCAAGAAACAAGAAACGACAGAAT
CTCGATTCAGTTGTAATATTTGCGGCAAGTACTTCAAGCGAATGTCCTCT
TTATCTACTCACCGCCTAATCCACACGAACATTAAACCTTACCAATGTAC
CAAATGCGATAAATCATTTCTAAGAAAATCAGACTTGAAAAAACACGATA
TGATGCACAGCGGACAAAAACCACATCAATGTGAAATTTGCGGTAAACTA
TTCAGCCAATCTTCAAATATGTTAACCCATTTAAGACGGCACTCTGGAGT
CAAACCTTTCGCTTGTAAAATTTGCGGACGTGCTTTTTACCGTAAAGTTG
ATGTTAGGAGACATACTTTACGTCACAAGGAACAGGGACTTGTTCATTAG
AATTGATTTATGATCAAATTTTATATACAATAATCCTACTAACCAAATTA
ATTAAACTTTTGGTTCTTATTTCTCATGTTCGATATATGATGCTCTTTTT
AAGATAAAGgtgcttaaatttttgagtctttgaaaaattttgagaaactc
CAGTTCTTTTTACGTTGGTTAAATTTTCTATAANTTTTAAGATTAAGgtg
cttaaatttttgagtctttgaaaaattttgagaaactcCAGTTCTTTTCA
AGTTGGTTAAATTTTCTATATCGATGTTGAAACTTTTGTAACAAAAGTAT
TATAAAATATTATCCAGCcattttaaaaaggttttgaaatatttttttct
tgaatattttaaattgtACATAGGAAAAACATAAGCGTtgtaaaaaaagt
gaaagaatttTTCCCCTCCAAAACAATTTgtacatatattatatatattt
gaagaaaatatgtTAAAGTGAAAGAAAGGGTCTGGATCCCTTTTCCAata
gatttatattttttgaagaaaagttgttatttttttcatattaaCGATTA
TTTCTTTTGCAAGTCAAATAGAAATATACTAATAACCAAGagtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066105-exon-scaffold_450-1491911889:194987..195335 | TCONS_00066105-exon-scaffold_450-1491911889:194987..195335 | Clytia hemisphaerica | exon |
| TCONS_00066105-exon-scaffold_450-1510915933:194987..195335 | TCONS_00066105-exon-scaffold_450-1510915933:194987..195335 | Clytia hemisphaerica | exon |
| TCONS_00066105-exon-scaffold_450-1575043694:194987..195335 | TCONS_00066105-exon-scaffold_450-1575043694:194987..195335 | Clytia hemisphaerica | exon |
| TCONS_00066105-exon-scaffold_450-1491911889:196358..197581 | TCONS_00066105-exon-scaffold_450-1491911889:196358..197581 | Clytia hemisphaerica | exon |
| TCONS_00066105-exon-scaffold_450-1510915933:196358..197581 | TCONS_00066105-exon-scaffold_450-1510915933:196358..197581 | Clytia hemisphaerica | exon |
| TCONS_00066105-exon-scaffold_450-1575043694:196358..197581 | TCONS_00066105-exon-scaffold_450-1575043694:196358..197581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:194987..197581 + |
Blast
BLAST of TCONS_00066105 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 3.439e-40 Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 607 KKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRHKEQGL 969
K + E F C ICGK FKR S+LSTH LIH++ +PY C C K F +KSD+KKH +H+G+KPH+C++CGK FSQSSN++TH R+H+G KPF C +CG+ F RKVD+RRH R + GL
Sbjct: 303 KAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRH--RETQHGL 421 HSP 2 Score: 94.7449 bits (234), Expect = 9.443e-21 Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 604 IKKQETTESRFSCNICGKYFKRMSSLSTHRLIHTNIKPYQCTKCDKSFLRKSDLKKHDMMHSGQKPHQCEICGKLFSQSSNMLTHLRRHSGVKPFACKICGRAFYRKVDVRRHTLRH 954
+++ + F+C +CGK F SL H+ +H+ + + C C KSF R S L H ++HS +P+ C+ CGK F Q S+M H H+G KP C++CG+AF + ++ H+ +H
Sbjct: 274 VRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 390
The following BLAST results are available for this feature:
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