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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066104 ID=TCONS_00066104|Name=TCONS_00066104|organism=Clytia hemisphaerica|type=transcript|length=1654bp
CTTTCTGAATATGTGATTATCTTTAATTAATTGATTTCTATTTGATTATC
TTTTGATTGGTAATGGCTTTAAAAACAAGAATATACCAGTATTTGATTTT
ATATACTTTGCTGCAGATATATTTAGGTTCGTCCTCTCCGTCAATCGTTG
AACCCAACCAGCATGTCATCAAAGACATAAATGATTCTCAGAAGCTAGCA
CCTGGTCAATATTCAATGAGCAATGCAGTGAACGCAACAACAAAAACGTC
TGCAGAATCATCAACACCAAAGACTGTTTCCAATAAATATTTGGATTCAT
CAACAAATGCAGCATTGAAATCGCCAGATTCACAAAAAGCTCCTTCATTG
ACATCAAACATAACATTAGATTCATCAGATATTCAAGCTAATGTTATCGA
TGATCCTCAATCGATTCTGGAGCGCATCCAACAGAAAACAGCTTCATTAC
AAGAAACCAGAGATGTAGAGGATACTAAGTTTATTGATAAGCCAAGTATT
GGAGTCTCGTTTTTTATCGCTGGAGCTAATAGCAAATCATCAAATGTTCA
TCAAAAACCAACACAAAGACATTTTAGCAATGCTACAGACCCTAAATTTC
GAGTCGCAAACTCGACTACAAGGTATTTGAATCAGAACCCTGGATTTTCT
ACTGATGACGACCTTCCAAAAAAGCATGGCTTATTTCTTGACTTGAATAA
ATTGAAACGCAAGATTAATAAAGAGAGTCAAAGCTCTAGAACTAGATGGA
AATCAATGCTTAAGAAATTGGTACGCGATATTGACGCATATAAAAGGACT
TTGCGAAAGAATCTTTTATCTGATAAAAATAATGTGAAAAATACAGAACT
ACTTAAGGGAAAAGCTGCGTTAAAAGAAACTAGCCTTGAGAGTAAGGGCG
GTAAAAAAGACTTTATAGTTGAGGTAGAGGATGACGACGACCAGGGCGGG
GAGGACGGAGCTGGTGATTATGTTGAAGAGATAACCAACGACGACGCAGA
GGGCGTTACTGGAAACCGCAGGAATTTAAAGGACTTACTTGACGACGATC
TTACAAACCCcgatgaagaggaggctttccGCCCTCGCGGAAGGCGCTTA
TCAATTTTAACATTATTCGAACAATTTTTAAGACAAAAACGTCAGGCCAG
AAGACACCAAAGATCGAAACAGGGATATGAAGAACTCTTAACGAATCTCT
ATTCAAACACTATTGGAGACGGTGATTCTTTACAGGATGACATGTCAATT
AATAGAAATATAGTCAGCCAACCATTTGATCTTGACCAAGGATTTATAAG
TGGTAATAGACGTCGTCTaggacaaaaattatttctggcATCTTTAAAAG
ACAGACAAACGGATGCCGATATTCACAGTTACTACAATACTGCAATAGGA
AGGAGAGTTCCAGAAGTGTTTACAGACACTGAGGAACCATCGGTTATCCC
tcagaattttataagaacaaatacCTATTTACCTGCACGAATGATGGTAC
CTGTACCTAATGAGCAGGTCTTTGTGattcaagaaaatcaaatttaaatt
taaacgTTAAGTTTACTATCAgaatatattttgatattttgtatgTATAA
tgttataatgttcttaacgaGAATTGAACGAATCTTTTTACACCAGTGAG
CTTT Run BLAST on NCBI protein sequence of TCONS_00066104-protein >TCONS_00066104-protein ID=TCONS_00066104-protein|Name=TCONS_00066104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MALKTRIYQYLILYTLLQIYLGSSSPSIVEPNQHVIKDINDSQKLAPGQY
SMSNAVNATTKTSAESSTPKTVSNKYLDSSTNAALKSPDSQKAPSLTSNI
TLDSSDIQANVIDDPQSILERIQQKTASLQETRDVEDTKFIDKPSIGVSF
FIAGANSKSSNVHQKPTQRHFSNATDPKFRVANSTTRYLNQNPGFSTDDD
LPKKHGLFLDLNKLKRKINKESQSSRTRWKSMLKKLVRDIDAYKRTLRKN
LLSDKNNVKNTELLKGKAALKETSLESKGGKKDFIVEVEDDDDQGGEDGA
GDYVEEITNDDAEGVTGNRRNLKDLLDDDLTNPDEEEAFRPRGRRLSILT
LFEQFLRQKRQARRHQRSKQGYEELLTNLYSNTIGDGDSLQDDMSINRNI
VSQPFDLDQGFISGNRRRLGQKLFLASLKDRQTDADIHSYYNTAIGRRVP
EVFTDTEEPSVIPQNFIRTNTYLPARMMVPVPNEQVFVIQENQI Run BLAST on NCBI transcript from alignment at scaffold_450:166672..168883+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066104 ID=TCONS_00066104|Name=TCONS_00066104|organism=Clytia hemisphaerica|type=transcript|length=2212bp|location=Sequence derived from alignment at scaffold_450:166672..168883+ (Clytia hemisphaerica)
CTTTCTGAATATGTGATTATCTTTAATTAATTGATTTCTATTTGATTATC
TTTTGATTGGTAATGGCTTTAAAAACAAGAATATACCAGTATTTGATTTT
ATATACTTTGCTGCAGATATATTTAGGTAAGACTTTCGTTTAACTTTTCG
TAGAGCATTTTTCTTCTAGGATTAAACGATTGAACATCTTGCAAATTACT
CTAAAATTTGGTTTGAGAAATTCGCGGATGTAGTAGTATGCGTAAAACAT
TTTGAACTTGCCACGACTGAATTTATTGGGCCATTCTATTAAATTTCTAT
AcagggggggtggacgaaccttatcaagccaaaaaaacatttcttggaAA
TGCGTAGATATcccctggaaaatggaaaaaatttacaaaaatcccgtgga
aaaatttattttcataccttaaagtgacggtggaaatttcgaaatatttt
tttacccccccccaaaaaaacaaCACTcgtttagaccccctggaaattct
gctCAAGTcatcccctggaaatgttcgtctgTATAAAcataaaatggaat
agcccattattCTTACAAAACATTTGGAACTTGCCACGACTGAATTTATT
ATAGAACATTTATATTACTGTATATAACATGCATTACCAACAATCTAACC
TCGTTCATTTATTTACCAACTCCACAAAATTCAGGTTCGTCCTCTCCGTC
AATCGTTGAACCCAACCAGCATGTCATCAAAGACATAAATGATTCTCAGA
AGCTAGCACCTGGTCAATATTCAATGAGCAATGCAGTGAACGCAACAACA
AAAACGTCTGCAGAATCATCAACACCAAAGACTGTTTCCAATAAATATTT
GGATTCATCAACAAATGCAGCATTGAAATCGCCAGATTCACAAAAAGCTC
CTTCATTGACATCAAACATAACATTAGATTCATCAGATATTCAAGCTAAT
GTTATCGATGATCCTCAATCGATTCTGGAGCGCATCCAACAGAAAACAGC
TTCATTACAAGAAACCAGAGATGTAGAGGATACTAAGTTTATTGATAAGC
CAAGTATTGGAGTCTCGTTTTTTATCGCTGGAGCTAATAGCAAATCATCA
AATGTTCATCAAAAACCAACACAAAGACATTTTAGCAATGCTACAGACCC
TAAATTTCGAGTCGCAAACTCGACTACAAGGTATTTGAATCAGAACCCTG
GATTTTCTACTGATGACGACCTTCCAAAAAAGCATGGCTTATTTCTTGAC
TTGAATAAATTGAAACGCAAGATTAATAAAGAGAGTCAAAGCTCTAGAAC
TAGATGGAAATCAATGCTTAAGAAATTGGTACGCGATATTGACGCATATA
AAAGGACTTTGCGAAAGAATCTTTTATCTGATAAAAATAATGTGAAAAAT
ACAGAACTACTTAAGGGAAAAGCTGCGTTAAAAGAAACTAGCCTTGAGAG
TAAGGGCGGTAAAAAAGACTTTATAGTTGAGGTAGAGGATGACGACGACC
AGGGCGGGGAGGACGGAGCTGGTGATTATGTTGAAGAGATAACCAACGAC
GACGCAGAGGGCGTTACTGGAAACCGCAGGAATTTAAAGGACTTACTTGA
CGACGATCTTACAAACCCcgatgaagaggaggctttccGCCCTCGCGGAA
GGCGCTTATCAATTTTAACATTATTCGAACAATTTTTAAGACAAAAACGT
CAGGCCAGAAGACACCAAAGATCGAAACAGGGATATGAAGAACTCTTAAC
GAATCTCTATTCAAACACTATTGGAGACGGTGATTCTTTACAGGATGACA
TGTCAATTAATAGAAATATAGTCAGCCAACCATTTGATCTTGACCAAGGA
TTTATAAGTGGTAATAGACGTCGTCTaggacaaaaattatttctggcATC
TTTAAAAGACAGACAAACGGATGCCGATATTCACAGTTACTACAATACTG
CAATAGGAAGGAGAGTTCCAGAAGTGTTTACAGACACTGAGGAACCATCG
GTTATCCCtcagaattttataagaacaaatacCTATTTACCTGCACGAAT
GATGGTACCTGTACCTAATGAGCAGGTCTTTGTGattcaagaaaatcaaa
tttaaatttaaacgTTAAGTTTACTATCAgaatatattttgatattttgt
atgTATAAtgttataatgttcttaacgaGAATTGAACGAATCTTTTTACA
CCAGTGAGCTTT Coding sequence (CDS) from alignment at scaffold_450:166672..168883+ >TCONS_00066104 ID=TCONS_00066104|Name=TCONS_00066104|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_450:166672..168883+ (Clytia hemisphaerica)
ATGGCTTTAAAAACAAGAATATACCAGTATTTGATTTTATATACTTTGCT
GCAGATATATTTAGGTTCGTCCTCTCCGTCAATCGTTGAACCCAACCAGC
ATGTCATCAAAGACATAAATGATTCTCAGAAGCTAGCACCTGGTCAATAT
TCAATGAGCAATGCAGTGAACGCAACAACAAAAACGTCTGCAGAATCATC
AACACCAAAGACTGTTTCCAATAAATATTTGGATTCATCAACAAATGCAG
CATTGAAATCGCCAGATTCACAAAAAGCTCCTTCATTGACATCAAACATA
ACATTAGATTCATCAGATATTCAAGCTAATGTTATCGATGATCCTCAATC
GATTCTGGAGCGCATCCAACAGAAAACAGCTTCATTACAAGAAACCAGAG
ATGTAGAGGATACTAAGTTTATTGATAAGCCAAGTATTGGAGTCTCGTTT
TTTATCGCTGGAGCTAATAGCAAATCATCAAATGTTCATCAAAAACCAAC
ACAAAGACATTTTAGCAATGCTACAGACCCTAAATTTCGAGTCGCAAACT
CGACTACAAGGTATTTGAATCAGAACCCTGGATTTTCTACTGATGACGAC
CTTCCAAAAAAGCATGGCTTATTTCTTGACTTGAATAAATTGAAACGCAA
GATTAATAAAGAGAGTCAAAGCTCTAGAACTAGATGGAAATCAATGCTTA
AGAAATTGGTACGCGATATTGACGCATATAAAAGGACTTTGCGAAAGAAT
CTTTTATCTGATAAAAATAATGTGAAAAATACAGAACTACTTAAGGGAAA
AGCTGCGTTAAAAGAAACTAGCCTTGAGAGTAAGGGCGGTAAAAAAGACT
TTATAGTTGAGGTAGAGGATGACGACGACCAGGGCGGGGAGGACGGAGCT
GGTGATTATGTTGAAGAGATAACCAACGACGACGCAGAGGGCGTTACTGG
AAACCGCAGGAATTTAAAGGACTTACTTGACGACGATCTTACAAACCCcg
atgaagaggaggctttccGCCCTCGCGGAAGGCGCTTATCAATTTTAACA
TTATTCGAACAATTTTTAAGACAAAAACGTCAGGCCAGAAGACACCAAAG
ATCGAAACAGGGATATGAAGAACTCTTAACGAATCTCTATTCAAACACTA
TTGGAGACGGTGATTCTTTACAGGATGACATGTCAATTAATAGAAATATA
GTCAGCCAACCATTTGATCTTGACCAAGGATTTATAAGTGGTAATAGACG
TCGTCTaggacaaaaattatttctggcATCTTTAAAAGACAGACAAACGG
ATGCCGATATTCACAGTTACTACAATACTGCAATAGGAAGGAGAGTTCCA
GAAGTGTTTACAGACACTGAGGAACCATCGGTTATCCCtcagaattttat
aagaacaaatacCTATTTACCTGCACGAATGATGGTACCTGTACCTAATG
AGCAGGTCTTTGTGattcaagaaaatcaaatttaaATGGCTTTAAAAACA
AGAATATACCAGTATTTGATTTTATATACTTTGCTGCAGATATATTTAGG
TTCGTCCTCTCCGTCAATCGTTGAACCCAACCAGCATGTCATCAAAGACA
TAAATGATTCTCAGAAGCTAGCACCTGGTCAATATTCAATGAGCAATGCA
GTGAACGCAACAACAAAAACGTCTGCAGAATCATCAACACCAAAGACTGT
TTCCAATAAATATTTGGATTCATCAACAAATGCAGCATTGAAATCGCCAG
ATTCACAAAAAGCTCCTTCATTGACATCAAACATAACATTAGATTCATCA
GATATTCAAGCTAATGTTATCGATGATCCTCAATCGATTCTGGAGCGCAT
CCAACAGAAAACAGCTTCATTACAAGAAACCAGAGATGTAGAGGATACTA
AGTTTATTGATAAGCCAAGTATTGGAGTCTCGTTTTTTATCGCTGGAGCT
AATAGCAAATCATCAAATGTTCATCAAAAACCAACACAAAGACATTTTAG
CAATGCTACAGACCCTAAATTTCGAGTCGCAAACTCGACTACAAGGTATT
TGAATCAGAACCCTGGATTTTCTACTGATGACGACCTTCCAAAAAAGCAT
GGCTTATTTCTTGACTTGAATAAATTGAAACGCAAGATTAATAAAGAGAG
TCAAAGCTCTAGAACTAGATGGAAATCAATGCTTAAGAAATTGGTACGCG
ATATTGACGCATATAAAAGGACTTTGCGAAAGAATCTTTTATCTGATAAA
AATAATGTGAAAAATACAGAACTACTTAAGGGAAAAGCTGCGTTAAAAGA
AACTAGCCTTGAGAGTAAGGGCGGTAAAAAAGACTTTATAGTTGAGGTAG
AGGATGACGACGACCAGGGCGGGGAGGACGGAGCTGGTGATTATGTTGAA
GAGATAACCAACGACGACGCAGAGGGCGTTACTGGAAACCGCAGGAATTT
AAAGGACTTACTTGACGACGATCTTACAAACCCcgatgaagaggaggctt
tccGCCCTCGCGGAAGGCGCTTATCAATTTTAACATTATTCGAACAATTT
TTAAGACAAAAACGTCAGGCCAGAAGACACCAAAGATCGAAACAGGGATA
TGAAGAACTCTTAACGAATCTCTATTCAAACACTATTGGAGACGGTGATT
CTTTACAGGATGACATGTCAATTAATAGAAATATAGTCAGCCAACCATTT
GATCTTGACCAAGGATTTATAAGTGGTAATAGACGTCGTCTaggacaaaa
attatttctggcATCTTTAAAAGACAGACAAACGGATGCCGATATTCACA
GTTACTACAATACTGCAATAGGAAGGAGAGTTCCAGAAGTGTTTACAGAC
ACTGAGGAACCATCGGTTATCCCtcagaattttataagaacaaatacCTA
TTTACCTGCACGAATGATGGTACCTGTACCTAATGAGCAGGTCTTTGTGa
ttcaagaaaatcaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066104-exon-scaffold_450-1491911889:166672..166797 | TCONS_00066104-exon-scaffold_450-1491911889:166672..166797 | Clytia hemisphaerica | exon |
| TCONS_00066104-exon-scaffold_450-1510915933:166672..166797 | TCONS_00066104-exon-scaffold_450-1510915933:166672..166797 | Clytia hemisphaerica | exon |
| TCONS_00066104-exon-scaffold_450-1575043694:166672..166797 | TCONS_00066104-exon-scaffold_450-1575043694:166672..166797 | Clytia hemisphaerica | exon |
| TCONS_00066104-exon-scaffold_450-1491911889:167356..168883 | TCONS_00066104-exon-scaffold_450-1491911889:167356..168883 | Clytia hemisphaerica | exon |
| TCONS_00066104-exon-scaffold_450-1510915933:167356..168883 | TCONS_00066104-exon-scaffold_450-1510915933:167356..168883 | Clytia hemisphaerica | exon |
| TCONS_00066104-exon-scaffold_450-1575043694:167356..168883 | TCONS_00066104-exon-scaffold_450-1575043694:167356..168883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:166672..168883 + |
Blast
The following BLAST results are available for this feature:
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