TCONS_00066096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066096
Unique NameTCONS_00066096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066096 ID=TCONS_00066096|Name=TCONS_00066096|organism=Clytia hemisphaerica|type=transcript|length=2544bp
cgggtttgtgtacagactagTTGGTACCGAATTAAATAATACCGGACAGC
CAAAATGACGGACATCAACATACCCGGACTGGTCAGTATTATTGTGTTTT
ATCTTTTGATCCTCCTGATCGGTGTTTTTGCTGCATGGAAGAAGAACAAA
GCTACTGCGCAAGCACAAACAACTGAAGAAGAAACCAACGAAGTGATTTT
AGCGGGGAGGAACATTGGAATGTTTGTAGGATGTTTTACCATGACAGCGA
CATGGGTTGGCGGTGGTTACATCAACGGAACAGCAGAGTCAGTTTACAAT
GATGGTCTGGTTTGGGCTCAAGCACCATGGGGTTACGCCACCAGTTTGTC
ACTAGGTGGTTTTTTCTTTGCCAAGAAAATGCGTGAAGCCAATTACATTA
CCATGTTGGATCCACTCCAAGATAGATACGGTAAAATCATGGGTGCATTT
CTCTACATCCCTGCATTCCTTGGTGAAACGTTCTGGTCAGCATCTATCCT
ATCAGCGTTGGGTGCCACATTACGGGTCATCTTAGGACTGGAGATGAATC
TGTCAGTCATCGTCTCGGCATGCATTGCGGTTGGTTACACTTTCTTCGGT
GGATTATACTCAGTTGCTTACACCGACGTTGTGCAGCTTGGTTGCATTGC
TGTCGGATTGTGGCTTTGTGTACCTTTCTCTTTGTCCAATGATGTAACAA
CCAGTCTGAGTGTCACCAAAACTGAATGGATCGGTCATTTGGAGGGATAC
CGTGTAGGACAGTGGATTGATTATGCCATGTTATTGATTTGCGGTGGCCT
ACCATGGCAAGTATATTTTCAACGTGTATTGTCTTCAAAGTCAGCTGGCC
GTGCTCAAACTCTCTCCTTCGTCGCTTCCTTTGGTTGCATTGCTATGGCC
ATTCCAGCTGTTTTGATCGGAGCTGTTGCCAAATCTGCAGATTGGAGTCA
AATTCAAGGAGCAATTGATGCTGGTTTGATCAGTAATGCAACCGGTAAAT
ACATCATTACCGATACACGATTGACATTACCCATGGTTCTCCAATACCTC
ACTCCAACATGGGTTTCCTTCATTGGACTTGGTGCTATCTCTGCTGCCGT
CATGTCAAGTGCTGACTCCTCAGTTCTGTCCGCTAGCTCCATGTTTGGAC
ATAATATATATAAATTGATCTTCAGACAAAATGCAACAGCCAATGAGATC
ATCTGGGTCATCCGTGTTGGTATCTTCGTTGTTGGTGCCTTGGCAACGGT
CGTCGGTTTAACTGTTGAAAGTATTTACGCGTTATTCCATTTATGTTCTG
ATCTcgtgttttgtattttattcccGCAATTAGTGGGCGCCGTCTACATC
CCGACCGTCAATACGTATGGTTCAATTGCCGCCTACATTGTAGGGTTATT
CTTAAGATGTACGGGCGGAGAAGAACTCATCAACTTTCCGCCCTTGATCA
AGTATCCTTTCTATAAGAATAATCATCAAAATTTCCCGTTCCGTACTCTA
TCAATGATCTGTTCGTTCATCACATTGGTACTTGTTTCAAAGCTTTTCAA
CTATTTGTTTGATAATGATATTTTGGATGTTGAGAAATATGACACATTGG
GTGTTATTGAGCGACGCAAGAAATTGGCTGATAAGTTGATGCGACAAGAG
AAGAATGGTATTCGACCACAAGAAGATATTCCGATGAAAGAGAATTATCG
GAAATATGAAGATTCTGCTACTCACTGTTAGCTTCTTCAAAAATCCGTTT
ATtttcacacccctgtgtcacagacctactgggaccccagccctgaTGGA
AAATTAAGCACAAATTtcgtcccggtgggaaaatacccttgaatttcagc
ttACTTGGAaatcgactttgatttcatccccattcgaaattcatgttaaa
gaaattgcacttcaaaaccatctccactgggttttttaaccttggaacaa
tagaatttctatccccattaggatttcaataggaatttttatccccactg
aggaaaaagttccaccatggctgtgagacaggggtgtattttcggtttta
atttttgaaaactgtatatatttttatctAACAAAAATATGTATACAAGC
AATGCATATCGTATTTTAATGGTGATATGTGTAAACGATGAACTTGTTAA
ATATGATACCACGATgcaatttcaaattcaagtaAGTAACAGTCAAACCA
GATTTTATGGAAATAAAAAGATTACTAAACAATAAAACGACAAAAAGGTT
ATATCACTACAGTACAAGGTGAATATAAGCAGTCCAGTAAAGAGATGCTT
CACAAAAAACAACATTTAGATATTGTAAGACTCAAACAATActtgaaaca
atgaaaaaggTATTTCTTTGAAAAGTGGGTGTGGTGAAATGGCTAAATGG
ATCCAAccaaaagaacatttttattatttgtaaattttagattatatttt
atttttagcaacgatatttttataattcttttttaGATAAACAGCAAAAA
CTGTGTGTGTAGAAATTTCCTTGAAAGTTTGTTACAAACTGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_450:47995..54817+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066096 ID=TCONS_00066096|Name=TCONS_00066096|organism=Clytia hemisphaerica|type=transcript|length=6823bp|location=Sequence derived from alignment at scaffold_450:47995..54817+ (Clytia hemisphaerica)
cgggtttgtgtacagactagTTGGTAAGTGATCACGGAAAAAGAAGGAAC
GGTGAAATATATCTTTTTATGTTAATTAACTTATTTGCTTATAACTAGGA
GACTAGAATTTTATATGTTCAATTATTTGGGGAAGGAATTAAATAGTAAA
TGAACAggctataataaaacaaatctaCTTTAACATACTCGGTACTTCAC
TGTAAATTCACAGGAATACATGTAATTTTGCAAACTCGATGACTAAGAAA
ACAAACAAGTATTTAGTTTCAAATCTAATCTCTTATCTTCTTTTCCGAAG
GTACCGAATTAAATAATACCGGACAGCCAAAATGACGGACATCAACATAC
CCGGACTGGTCAGTATTATTGTGTTTTATCTTTTGATCCTCCTGATCGGT
GTTTTTGCTGCATGGAAGAAGAACAAAGCTACTGCGCAAGCACAAACAAC
TGAAGAAGAAACCAACGAAGTGATTTTAGCGGGGAGGAACATTGGAATGT
TTGTAGGATGTTTTACCATGACAGGTATGAGAATAGttctttattaaaat
tttcttaaaatgttcttgtttCACCATATTGTGAGTATTATTTGTGTATT
TTCCTAAGATATTGGGTAGTCCAGCAAGCCTTTAAATTCTTGACCATCGA
ATCCTTGTCTCCTTATATACCGGGTGTGTTAAAAAAAGCACCCTAGTTTT
TGACGTAGATATTCCTAGAGTAATTAGACCGGTTGTCGGACGGTTTGGTA
TACTGgccaatttctcaaaaactataaacctttaaataaaaattattata
cCATTATGTGGCTTAGTTTGGTGTTTTTCAAATATGTGGGAACCGATTTT
AGGAAAAGGAGCCTGTTCAAATGATTATATATCATAGAGTCGATATTTCT
CTCCACTAGTTGGCGGACGATTTTCAAtttgaccttacaaaaacgttaaa
ctttaaatttttcgcTCATTTCGtgtgaaagtggagaccggcctttagct
GTTTAGTTTTCGTCAAAAAAAGCGTTTCAAGGCCAGacaaaaatgtgtat
tttcaAGTTTGACCTGGTTTGACAGGTCTTCGCTTAAATGCACTATTTTC
ACAGACGATAGAATAAGATTAAAAAAGGAgcgaaaacatttttctttaaa
gtttgtattttcatttttttctgggtTTAAAGTCGCACGTTGGCCAAGTA
ACCCCGTCCTCCAACCGGCCCACCTACTCTATAGAACAAAAACATGcgaa
agtttgttcttatatagaagAAAACGTGTACTATTGAGTAAGTACCTCAC
TAAAATACAAACGTTACTGCACAAAATCTTTAGCTGTGATAAATTTGATT
TCGTACAGAGGTGTAGAAGCAAATACTTTCACCCTTTTACTTTTTTGTGG
GGATTTTTCTTGCACGGATTTTTCTTGCAGAATTTCAcgaatttcggaaa
aaaaactttaaaagggTGTAAGTTTTCCTTTTTGCAATATATTGAAATCA
AATCTTGTTTCAAAAACTTAGGTATTATTTTAATTCAGCTGATTCCAACA
TCAACAAATCAGAGTTGTAAAAATGGCAACTACTTAGATTAACACAATGT
TAAATTATATTTTCTGATTGTCAAAAATTTCTGTATTTGTTTTCTATGAG
AATAAAAACCAATATTCTTATGCTGTATCAAGTTCCAAAGCCTTCACATT
TTCTTGTATTACACATTGTAATGTCAACAATTTAAGGTCTTACATTTTCA
TACGATATCTCATGTCGTTGTGAAGATTAGGTATAAAGTGTCATGACTTA
TGCTtctttttgtccaaatttttttgccctCCTGCTGTTGTCTTATTGGA
ATAGAATAAGGCTTGTTTTACACTTTAAAAAActatttctattttaaatt
tttaagacATCTTCCTACTCCGATGTCCTAGGGAAAATTTAGNttatttc
tattttgaatttttaagacATCTTCCTACTCCGATGTCATGGGGAAAATT
TAGTCAAAAATAAAGGCTTGTTTACACCTGCAAACACTTTATCTATGTCC
TAAATTGAATCTACCTTTCTCCTGATGGTTTTGGAAGTTATATGGTTGGT
TTTGCACTGCAACTTTAAATGTCTATCAGTTTGGTCTCCACGTGTTTTGT
GATCGAGTAATACCGGTGCAGTGTCAATTATCAAACGAAAGTCAAGAGGC
TTGAAAACTCTCTTAACACGATAGCTTTAGAtatattatcttttcaatgc
aCTGGTGTGCTATTAGAATAACCGGCAGCTTTACCACATTTACGAGTACT
TTCAAACTCTCCTCTCAACATTTTTCTGGGTTGAATCTCACTGACAAAAT
AAACACTTCAAATAAGCGATTCTCTTtaaattaaaaactttaaaaacttt
ttcgaaTTATAACCTTAAAAAAGCTTTCCCTCATTAATATCACCCCATGG
CTGGCGttatcaaaagaaaacattttaaattaGAATCAAGAGACAagctt
ttggtatttttttaagagaaacattcttaaatacttttttaacaatattt
tggTCCTATTCACAAATTTTCCATGCTTTCCTGACGTCTATTTCTCATNG
ACAATATTTTGGTCCTATTTACAAATTTTCCATGCTTTCCTGACGTCTAT
TTCTCATCCATTTTAGCGACATGGGTTGGCGGTGGTTACATCAACGGAAC
AGCAGAGTCAGTTTACAATGATGGTCTGGTTTGGGCTCAAGCACCATGGG
GTTACGCCACCAGTTTGTCACTAGGTAAACAAATTTCCCACTAAACCTCC
AATGGCTTTATAATTTATATCCGATTTTTACatctatccgcagacacgtg
tttcgtccttcccaggactcatcagtgcggctcgggtaagcgagcataga
ctgctgttgtcaccagagtgctcaaaacactGAGTGTTGAGCTTCGCATA
ATTGCTTGCGATGAACGGGGAAGCAAAGCTTGCTCAAAAGAGTCTATAGA
GTACTCAAAGAACTAAAGTTTCGATTTTTAGAATTCTTCTGGGTGTACAC
TTTTAAAAAACTCTGAATTATTTATTGTAAAGAAGTAAGCCTTTGATACA
CCATCACGAAATATTGTGTTATTACCAGACAGATAGTTCTTAATAGAAAA
TTCTCATTTAGTAATATGTTTTGTCTATCTTCAAGGAAATAATTTTGACG
AAATTAGAACCCGCGAATTACACATTCGGTAATATTTCATGAACAATTGA
AAAATCCCttaaggaaaatgaaagaaatgagCCCAAAATTGGGTAAGtaa
aactgcgaaaattagtttcctgtAAGGTATAAATGATGTGCTGTGCCAGA
AAAACTCTTCATTGGGCTTGGGTGATTTTTCCAGGGACCAGGGGTATTAA
GTGATCTCAAATTCATCACATCATTTCAACCATTCAAAGGCTCTTGACTT
GAATTTTACAGAACTTAAAGCTTTTCTTCTACACTCATTTCTTGTCTTTA
GGTGGTTTTTTCTTTGCCAAGAAAATGCGTGAAGCCAATTACATTACCAT
GTTGGACCCNATCTTTAGGTGGCTTTTTCTTTGCCAAGAAAATGCGTGAA
GCCAATTACATTACCATGTTGGATCCACTCCAAGATAGATACGGTAAAAT
CATGGGTGCATTTCTCTACATCCCTGCATTCCTTGGTGAAACGTTCTGGT
CAGCATCTATCCTATCAGCGTTGGGTGCCACATTACGGGTCATCTTAGGA
CTGGAGATGAATCTGTCAGTCATCGTCTCGGCATGCATTGCGGTTGGTTA
CACTTTCTTCGGTGGATTATACTCAGTTGCTTACACCGACGTTGTGCAGC
TTGGTTGCATTGCTGTCGGATTGTGGCTTTGTGTACCTTTCTCTTTGTCC
AATGATGTAACAACCAGTCTGAGTGTCACCAAAACTGAATGGATCGGTCA
TTTGGAGGGATACCGTGTAGGACAGTGGATTGATTATGCCATGTTATTGG
TAAGTTTAGAAACTCTTATTTGGCTACAGCAGTCCGTACATCCAATTTCA
GGTTTGACATCGAGGTCCGGACATTTTTCTTCAGTCAGTGGCAAGTTTGc
ttgatttgaagaaaaaaatatctaaTAGATCCAGTACAGGAAGTAAAATC
TAAGGTCGAAAAATCCATATTCGAGGTCTACGTATTAAAATCAAGGGTGT
TTTAAAAGTGTATGCATTTTAAGAATGTGGTGATAGTGCGAGGGTTATGG
TTAGCTTTCAACCCTTTAAAAATTGGAATTCTGTTTGATAGTTTGACTTA
CTCGGGTCATTTGCAAAAttggaattttaaattttttcacgaGGATTACT
ATTCGTGAAGATgtccaaaattcgcgaaaatgatccatgcgaaatttaat
ccaagGTATTCAGATAGTTTACAATTTGTATTTCTTTATGTAGATTTGCG
GTGGCCTACCATGGCAAGTATATTTTCAACGTGTATTGTCTTCAAAGTCA
GCTGGCCGTGCTCAAACTCTCTCCTTCGTCGCTTCCTTTGGTTGCATTGC
TATGGCCATTCCAGCTGTTTTGATCGGAGCTGTTGCCAAATCTGCAGGTT
GGTAAAATCACTGATGCATGATAAAGATGTATCCAGAGGGAGAAGGGGGC
GTTTTATCGACATCTGAATTATTTTTGTACTAACaggctaacagacctca
ctaatGCGTGTGTATTAACAGCTTTTGTGATGCCttctgatagcgctaga
tagtattctctggcgtcaatcagtaacgtaaataaagcctgggatacacg
gggacgaggttgagaataaaataccttttcatttttcttaatcaTACCAC
CCTTAGATTGGAGTCAAATTCAAGGAGCAATTGATGCTGGTTTGATCAGT
AATGCAACCGGTAAATACATCATTACCGATACACGATTGACATTACCCAT
GGTTCTCCAATACCTCACTCCAACATGGGTTTCCTTCATTGGACTTGGTG
CTATCTCTGCTGCCGTCATGTCAAGTGCTGACTCCTCAGTTCTGTCCGCT
AGCTCCATGTTTGGACATAATATATATAAATTGATCTTCAGACAAAATGT
AAGTAAACATAACTGAGAAGTGCTGACTCCTCAGTTTTGTTCGCTAGCTC
CATGTTtgattcaaaaaaagtttgcCTGCGAATATCGTGTAAATAACTCG
AATTCCCTACTTTTATTTAGCCTGAATCGAAAACCTTTATAAATTAGCAG
GTAGTATGTAAAATCTTTAAGGAGCATGAATTCGTTAATGGATGTCAGAA
ACCTATGCTTGTACAGTACGTTCAAGTAACGTCCAAAGACTTTAATTCGT
CATATTGAATTTTTTGCCTTCTAACACAAACCTATGAAGATCCATATTGA
AACTTAGCCTCGGGAatgcaaaaagtaaaaataatataTGAATTTTGTTT
CTATATTTCAGGCAACAGCCAATGAGATCATCTGGGTCATCCGTGTTGGT
ATCTTCGTTGTTGGTGCCTTGGCAACGGTCGTCGGTTTAACTGTTGAAAG
TATTTACGCGTTATTCCATTTATGTTCTGATCTcgtgttttgtattttat
tcccGCAATTAGTGGGCGCCGTCTACATCCCGACCGTCAATACGTATGGT
TCAATTGCCGCCTACATTGTAGGGTTATTCTTAAGATGTACGGGCGGAGA
AGAACTCATCAACTTTCCGCCCTTGATCAAGTATCCTTTCTATAAGAATA
ATCATCAAAATTTCCCGTTCCGTACTCTATCAATGATCTGTTCGTTCATC
ACATTGGTACTTGTTTCAAAGCTTTTCAACTATTTGTTTGATAATGATAT
TTTGGATGTTGAGAAATATGACACATTGGGTGTTATTGAGCGACGCAAGA
AATTGGCTGATAAGTTGATGCGACAAGAGAAGAATGGTATTCGACCACAA
GAAGATATTCCGATGAAAGAGAATTATCGGAAATATGAAGATTCTGCTAC
TCACTGTTAGCTTCTTCAAAAATCCGTTTATtttcacacccctgtgtcac
agacctactgggaccccagccctgaTGGAAAATTAAGCACAAATTtcgtc
ccggtgggaaaatacccttgaatttcagcttACTTGGAaatcgactttga
tttcatccccattcgaaattcatgttaaagaaattgcacttcaaaaccat
ctccactgggttttttaaccttggaacaatagaatttctatccccattag
gatttcaataggaatttttatccccactgaggaaaaagttccaccatggc
tgtgagacaggggtgtattttcggttttaatttttgaaaactgtatatat
ttttatctAACAAAAATATGTATACAAGCAATGCATATCGTATTTTAATG
GTGATATGTGTAAACGATGAACTTGTTAAATATGATACCACGATgcaatt
tcaaattcaagtaAGTAACAGTCAAACCAGATTTTATGGAAATAAAAAGA
TTACTAAACAATAAAACGACAAAAAGGTTATATCACTACAGTACAAGGTG
AATATAAGCAGTCCAGTAAAGAGATGCTTCACAAAAAACAACATTTAGAT
ATTGTAAGACTCAAACAATActtgaaacaatgaaaaaggTATTTCTTTGA
AAAGTGGGTGTGGTGAAATGGCTAAATGGATCCAAccaaaagaacatttt
tattatttgtaaattttagattatattttatttttagcaacgatattttt
ataattcttttttaGATAAACAGCAAAAACTGTGTGTGTAGAAATTTCCT
TGAAAGTTTGTTACAAACTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041379XLOC_041379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066096-exon-scaffold_450-1491911889:47995..48017TCONS_00066096-exon-scaffold_450-1491911889:47995..48017Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:47995..48017TCONS_00066096-exon-scaffold_450-1510915933:47995..48017Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:47995..48017TCONS_00066096-exon-scaffold_450-1575043694:47995..48017Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:48295..48518TCONS_00066096-exon-scaffold_450-1491911889:48295..48518Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:48295..48518TCONS_00066096-exon-scaffold_450-1510915933:48295..48518Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:48295..48518TCONS_00066096-exon-scaffold_450-1575043694:48295..48518Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:50661..50768TCONS_00066096-exon-scaffold_450-1491911889:50661..50768Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:50661..50768TCONS_00066096-exon-scaffold_450-1510915933:50661..50768Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:50661..50768TCONS_00066096-exon-scaffold_450-1575043694:50661..50768Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:51496..51536TCONS_00066096-exon-scaffold_450-1491911889:51496..51536Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:51496..51536TCONS_00066096-exon-scaffold_450-1510915933:51496..51536Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:51496..51536TCONS_00066096-exon-scaffold_450-1575043694:51496..51536Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:51604..51993TCONS_00066096-exon-scaffold_450-1491911889:51604..51993Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:51604..51993TCONS_00066096-exon-scaffold_450-1510915933:51604..51993Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:51604..51993TCONS_00066096-exon-scaffold_450-1575043694:51604..51993Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:52438..52591TCONS_00066096-exon-scaffold_450-1491911889:52438..52591Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:52438..52591TCONS_00066096-exon-scaffold_450-1510915933:52438..52591Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:52438..52591TCONS_00066096-exon-scaffold_450-1575043694:52438..52591Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:52851..53092TCONS_00066096-exon-scaffold_450-1491911889:52851..53092Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:52851..53092TCONS_00066096-exon-scaffold_450-1510915933:52851..53092Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:52851..53092TCONS_00066096-exon-scaffold_450-1575043694:52851..53092Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1491911889:53456..54817TCONS_00066096-exon-scaffold_450-1491911889:53456..54817Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1510915933:53456..54817TCONS_00066096-exon-scaffold_450-1510915933:53456..54817Clytia hemisphaericaexon
TCONS_00066096-exon-scaffold_450-1575043694:53456..54817TCONS_00066096-exon-scaffold_450-1575043694:53456..54817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:47995..54817 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.976721	0	1.38539	2.73553	0.157969	0.323345	0.364784	0.665084	0.353464	0	0.00517912	0.134827	38.7681	14.4312	21.3653	12.0465	53.8875	20.4256	41.9843	51.493	29.093	38.2385	29.4164	27.6436	9.46821	7.29067	21.4266	6.64208	60.5573	36.5631
Blast
[Close]
BLAST of TCONS_00066096 vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 502.286 bits (1292), Expect = 2.231e-167
Identity = 282/570 (49.47%), Postives = 390/570 (68.42%), Query Frame = 1 
Query:   67 NIPGLVSIIVFYLLILLIGVFAAWXXXXXXXXXXXXXXXXXXVILAGRNIGMFVGCFTMTATWVGGGYINGTAESVY--NDGLVWAQAPWGYATSLSLGGFFFAKKMREANYITMLDPLQDRYGKIMGAFLYIPAFLGETFWSASILSALGATLRVILGLEMNLSVIVSACIAVGYTFFGGLYSVAYTDVVQLGCIAVGLWLCVPFSLSNDVTTSLSVT------KTEWIGHLEGYRVGQWIDYAMLLICGGLPWQVYFQRVLSSKSAGRAQTLSFVASFGCIAMAIPAVLIGAVAKSADWSQIQGAIDAGLISNATGKYIITDTRLTLPMVLQYLTPTWVSFIGLGXXXXXXXXXXXXXXXXXXXMFGHNIYKLIFRQNATANEIIWVIRVGIFVVGALATVVGLTVESIYALFHLCSDLVFCILFPQLVGAVYIPTVNTYGSIAAYIVGLFLRCTGGEELINFPPLIKYP-FYKNN----HQNFPFRTLSMICSFITLVLVSKLFNYLFDNDIL--DVEKYDTLGVIERRKKLADKLMRQEKN-------GIRPQEDIPMKENYRKYE 1710
            ++ GL++IIVFYLLILL+G++AAW+   + +  + +E     +I+ GR+IG+ VG FTMTATWVGGGYINGTAE+VY    GL WAQAP GY+ SL LGG FFAK MR   Y+TMLDP Q  YGK MG  L+IPA +GE FW+A+I SALGAT+ VI+ ++M++SVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW+ VPF+LS+     +  T      +  W+G ++   V  W+D  +LL+ GG+PWQ YFQRVLSS SA  AQ LSF+A+FGC+ MAIPA+LIGA+  S DW+Q       GL    T +    +  + LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L FRQNA+  EI+WV+R+ +FV GA AT + L  +++Y L++L SDLV+ ++FPQL+  +++   NTYG++A Y+ GLFLR TGGE  +   PLI YP +Y ++    +Q FPF+TL+M+ SF+T + +S L  YLF++  L   ++ +D +      + +   ++ + +N        ++P++ + +   +   E
Sbjct:    4 HVEGLIAIIVFYLLILLVGIWAAWRTKNSGSAEERSEA----IIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPDDNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDELALVKPRQSMTLSSTFTNKE 561
The following BLAST results are available for this feature:
BLAST of TCONS_00066096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A72.231e-16749.47High affinity choline transporter 1 OS=Homo sapien... [more]
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