TCONS_00066068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066068
Unique NameTCONS_00066068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066068 ID=TCONS_00066068|Name=TCONS_00066068|organism=Clytia hemisphaerica|type=transcript|length=707bp
TGTTCGACCAATGTAGAGTTCCTGTTGAAAATAGAATTGGCCATGAAGGA
GAAggCTTTAACATAGCAATGAACGCGCTGAATGGTGGTAGAATAAGCAT
TTCTTCTTGTTCACTTGGTGCGGCCCATCAATCCATCCAACTTTCAATTG
ATTATgctaaagaaagaaaacaatttgGAAATTCCTTAGCTGATTTTCAG
AACACACAATTTAAACTAGCGGAAATGGCGACAGATTTAGTTGCATCCCG
TCTGATGGTGCGAACGGCAGCCGAAGCCATAGACTCCAAAAGTAAAAATG
CTGCTACACTAGCTGCTATGGCAAAGTTACAAGCTACTGATAAATGCTTT
AACATTTGCAACTCAGCTTTACAACTACACGGTGGATATGGATATTTGAA
AGATTACGCAGTTCAACAATTCATGCGTGATACAAGAGTTCATCAGATTC
TAGAAGGTACCAACGAAGTAATGCGGATGATAATCGCACGACACCTGTTG
GGTTGaatcaagaaaaacagttttttagaaaaatgaaaatgatttttgta
CTTTTGATGAAGTAATTTAATATTTATAAACACTAGTGCTTTTCAGCTAT
CCAATattttatttagaatttttaaatcaatatgTCAATATAAATCTTTC
CTTTTGAGAGTGTTTCATTTTATTCATTCCCAAGTTATGATTCTGTGGAA
ATGTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_45:233634..241101+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066068 ID=TCONS_00066068|Name=TCONS_00066068|organism=Clytia hemisphaerica|type=transcript|length=7468bp|location=Sequence derived from alignment at scaffold_45:233634..241101+ (Clytia hemisphaerica)
TGTTCGACCAATGTAGAGTTCCTGTTGAAAATAGAATTGGCCATGAAGGA
GAAGTATGAAACTCTAATTTTCAAAGTCTGGCAAATTTTTACACTTTCAG
TATATCCTTTAACAGCGTATTCAGAACGTTCACCCCTTTAATAAACAGAT
ACCATATTCAGCCATTTCGCAAGACAGATCTTTTAGCATAAAAATGCGTT
TAAACTCATCAAGCTGGTGGTCTGTACCCGATGTCATATTAAGTGATCTG
ACAAGCCTAAAGGggttttcaaatcaattttccTTTGCTCGTCGTTCCTT
TTCAGAAAATATCAGGAAGATAAACTTTAGCTcctaaagattttcatttt
caatatatcagttttttacagattttcttcaaaagaaacatcaatttttg
aattcGATACATTTGCCATGTCAAGTTGAGTAAAACGAGTCAAATTTTTA
TATGAATAAGATTCTCTATTTccatttatcatttttcattttagggCTTT
AACATAGCAATGAACGCGCTGAATGGTGGTAGAATAAGCATTTGTAAGAA
AAAGAACTATTTTTATTATCTAGAAATAAGCATGTTTTGTAAGTGTAAAA
ATTGTTTAGGAGGGCTAGaattttggacctacctggaggtcctatgaatc
aAACCATTACCGTTCGTTCGTTCCTTTGTTCGTCTGTTACctgcttttct
cgagattttatcattagtttttttccgatattttgcacaaagatgcgtat
tagcaatacCCCAAATGAAATAATTCTTtcgaaaattccggaaatcgccg
tttttgccgatttttttccaatatttctttatttttcacacAAAAGCATT
ATTGATAACAACGCCCAcaatcaagcatgattcaatgattcatgattcaa
ttgtcaataaaactgatcgTTCTTTTTTCACGATCTTTTCCATTATCGCT
TTAAACTACATGCGATTTTCAATAACTCGAAACTCCTCAAGATTCTTATT
AAGCTATTCTGCCTCTCTATAACTCGACTTCCAGTAACTCAAACAATTAC
TGATTATCCCCTCGACTATATTACACTTCCCTACTTTTATCATCAGCGTT
CCGGCTTGTTATACACCTACACCTACGATTTTAGCATCACTGAatcaaat
ctatttttagttttatttttggtatttttgtcatCAAAAATTCTCGGCTT
ACCCTGATACCCGACAACGGACAGTGCAGTGGCCTGAAAAGGACCGATTG
GAAGGCTATCTTTTATTCTTGGTGTACTTGTTTAATAGTTCTTCgttttt
tctttaacttttcatTAAGTAGCTCACTAATTCTTTGTTTCAGCTTCTTG
TTCACTTGGTGCGGCCCATCAATCCATCCAACTTTCAATTGATTATgcta
aagaaagaaaacaatttgGAAATTCCTTAGCTGATTTTCAGGTAAATTTG
TTAAAAGTTTTACTTTCATTTGTCCTAAAGTGGAAAATCTCTTGCCTCTT
TTTCTAAAATAGTtctggaaaagatttttttcttttaggtcgaagcactt
gttatacaatTTCGGGAAGTATAATTAAAGAGCTCGGACTTTGTTGTTGT
ACTTTCGTTTCATGGGTGCCAATTTCTTCGGACCATTGCATATTGTAGCG
CGGGAGAGGTTGATCGGGCCTCTCCTGGTACGATACgcgaatatttattt
ttatgctCCAGGCGTTTGAGATCTGACCCGCCGCTAGAAGACGGGGAGGA
ATGGAATGTACAGTGGAATTCAGAGTGACATTGGAGCAAAGTAGACATTA
GTTTTTCTTCAATACATGTTTCACATNTGACAgtagagcaaagtagacat
taGTTTTTCTTCAATACATGTTTCACATAAATAGTTCCATTAAGATAAAT
AACATTCAGCTTACGATAAATTAATACTTCTTTAAATACATAAGTCTGCG
TCGAGACGTTGTCGATATCTTGAGTTAGCGACTTGGTTTCTAGTGATCAC
CTTTCGACATACGATTCGGGCATTTTCTACAAAGGCATCCTCTGGCCTTC
CGTGGTCCATCCACAGGCATCCGCTACACGGGCATCTTCTACACAGGTAT
GCGACCATGGTTATCGCATCACCAAGTGGTGGGAAATTGCGATCGAGCGC
GGAAGTAGGCTTTGGTGGACCTGCTCCCTAGGACGGGGTCCGCAGAAGTC
TATGCTCCGCGGAGCGCTAGTTGGGAATCCCCCTAGTTTTCGATCTCGTT
GAGATATACTGATCTCATCCATAATTCATTTTTCCTTCACATTCAACTAC
GTATTTTTCTATATATAAATCCCGCATGACAATATTTTACAAACCAGAAT
TAAAATGTTCGAGAATAACCCAACATTGAAATATTTCGGTAATTATTAAT
GTTATTAACTTTAAATTTTGCACAAACATTCAAAACACATGTGCAAAATA
CACGTACAAAATACACATTCAAACTACATCTACAAATACACATTAAAATT
TCCAGATCGTTATCTTGGATTGGTATTACTTAACaaaccaataatttttt
tataataagcagatataaggtaaaagttggttattgagatttattaaccc
gatgTGATGAATATTCAAGGAGGCGAACCcagggttaataaatccaataa
ccaacatgaaacctattgaatatacgTTTTATTCTATACCTAAaggcaaa
aacaaaagaaaaacttgaaacattttttacaaaataaaaagtgCTCACAA
AATCGAATGttcgaaatttttctctttgtcaactttttaattactttaag
tcataaaaaatgtaattgacaatagaactattttaaagtttcttttctaG
CAAGAGTAAAAACATGCCTAAATCCATGacatcttcaaaaaaaattgaat
aaaaaaattgccaTGTGATAATAGCCATGTGATATCGTTAATTATCAAAC
GActgttttttatttcatcttttattttttgcCTACAagtataccgggtg
acccacgaaaaagttcggacctttctcggcgtcttgaggccgaacaaatg
tcccaaagtgctcggaattttggtatttaaaaagttgatatcctaactta
aaatttgagctatcactttttaaatttgaccaactagttctctacttatg
accttttaaactcaaaattcacttttcggaaagtgtaaaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNttaaaacaagactagtttttatcaaaattggcactttcaag
gaattttctcaaaaactgtatatcaaaaacgtctaaaaatacctaatttg
atacccctttttcgcctgttttttacactttccgaaaagtgaattttgag
tttaaaagctcataactagggaacttgtgcgtcaaatttaaaaagtaatg
gctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNctactttctaaataataaaactccaagcactttgggacatttgttcgg
cctcaagacgccgagaaacgtccgaactttttcgtgggtcacccggtaga
ataatattttttgtctATAAAATGGTCCATAGACCTCTAACAGAAGAACA
GATTGCTCATTCTTTGAAAAAGCAAAGCATTGCTTAAGCCTTTATAGGGT
GCGCGTTACCCCCAAGAATTTGAATTAACGAGATTTTCATCATCGCCTAC
ATAACAGCCACTGTAGCTGGAATATTTATTTTATGCTTTTACTATAATGG
CATATCACTCATTTAATATCTGGTACTGAATTTTGGTATTTGATTAGTAA
AATGAGTAAGAATTTATTGATTTTGGTAAATCAGAATGAcaattttgcca
attttacGATAAAAATCCCTGGAAAAATAAGATTTCAACTGACGgatata
tattttgattttcatagttcgAAAATGAACGGAGAAACCTTTTTTCCTAA
AGTTTCTTGCTCTTTCGAGCACTTcaaaatttgccatactcaccaTATTT
GCCAAATcttcaatttcaatgtcaaaaggtcATCacagttttgtggcaaa
acCTTACACCGCTACGCCACCATTTTGATTTCCGTTTTATGATGCTTcgt
cagcagttttctgtcggcgtttCTAGAGTACGAGGTGTTTAAACACGCAT
GCGATTTTTTTTTaccaatcaaattgccgatcggtagcattggaaggtct
tctatttttcaaaatctttgccaaatgtggcaaaattggagcgaaaagaa
cacaggtctcgtgggaacagtgttttgtatggacGTAAGctccaaaaatg
ccaagaatgccagattcaacacatcttttttatttggcatttatggtgct
taaattttgccacatttgccgaatttttctcaatcgaatgtaaaataatt
ggcaatcagggcaaaattggcatattttgaagtcaatcgaatcgGCTgtt
agttttgaattttttttcaaacgacATTCCTAATGTATGACTTCGAATAC
AGTATATTGGATTCCATTGACAAAATTGATGTCACTTTAATCTTTGCTGT
CAAACAAAGCTAGGGTGTGCTTGTTGACATTTGGACACTAGTTCTGATCG
AGAGGTGATAACTTCGCCAACTTTGTTTGCAATTCCAAGCTTTTTGTTCA
GGCACAGCATTTCATAGAGGATCGCTGGAACCCGCCAGTTCTTTGGACGA
TTTTCCACGAAAATCTATTTGTCTCTCTCTACTTTCTCTACTTGTCCAAA
ATATGGCAGGATTTTCCACACTGAACTGATTAACATCTCTACATCAAAAT
TTGCATAGCACTCCAAAAAGAAAGCTTCTTAATTTTCTGCtactaaaaag
aagaaatattcTTCCTCGAAAATAATTACCCTTAAAGAATACATAGCAAT
TTAACAATACATAGAATACATAGCCATTTTCTGCTACTAAAGAAGAAGTA
TTCTtccttgaaaataattttccttaaagaATACATGGCGCAAGAAAGAC
GAACAAACTAATGTACGAAAAATCCTTAACCTACTTTACACTAATGCAGA
CCAACTAactaagaaaaagaaattaaactGAATGAAGTGATTTCCAAAGA
ACAACGGTATTATAGCAATTTGCGATGTAATTTAACCACACCATTTTGTA
GAGCATAACCCTAACAATAGAAACTTGCATGTACTGATAATAACTTTGAC
GACTTGTCTAAAATCAAAAGAACCAAAAATGTCAATGGAAAGAGAATGAT
GTATATTTTTATATCTTACAGAACACACAATTTAAACTAGCGGAAATGGC
GACAGATTTAGTTGCATCCCGTCTGATGGTGCGAACGGCAGCCGAAGCCA
TAGACTCCAAAAGTAAAAATGCTGCTACACTAGCTGCTATGGCAAAGTTA
CAAGCTACTGATAAATGCTTTAACGTAAGTGATGCCTTTTGAAATTCTAC
TTCTTCCATCGAATACTATGAATGACATGAATGATAAGCTTCCTTTTTTG
TATTGTTTACTAACAGATTTGCAACTCAGCTTTACAACTACACGGTGGAT
ATGGATATTTGAAAGATTACGCAGTTCAACAATTCATGCGTGATACAAGA
GTTCATCAGATTCTAGAAGGTACTTccgtttaaaaaaaagaatggatGAA
ATTCTTatcttttctttcattttcgttGATTACTTGACTTGGAGGTACAT
AGGTTTACACTCTATGGAATTTGCCTACTTTGTTCTACCTCTAAAGAATG
CATTGTGCATTTGTTAACTTagagaaagtcaatttttaatGTGATAAcag
tagattttttttaattttttaagctAGAGTTATTTCAGCAAGCTTCCCct
tcaataaagaaaatatcaaagatTCCACAATCTTTATTACAGCGTGTTGT
TCAGATTGATCCTCTCACTAATTTCGTCTTTATCGCGCCTAGAAGTTACC
GTGTTAGGTTTTTGAATGTATCTATCTGGTCACCATTTCTTCAAATAGGG
AAAGAAAAATGAATGATATTGAGATGACGCGTACAAATATTTATTCATTG
TTTTGCACTGATGCGCCTTTAGCCTTTTAGCTCGAAGAAAATATTGGAAC
AGGCTTGAATTCTTTTCATCTTCTTCTCCGCCTCTGCTTCTGTTCTTAAT
AACCTAACATGTAGAATTAGGGGCCTTAGCATGAGGTAGATCTATCGTGC
GCAGGGTTGTGAGTTCGACCCCATCTTTATCATACGAAAATTTTACTTGA
TACCCCatttgatgctcagcaattaaagatCTGTGTCAAAATAAAGTAAG
TGgggaaatccagggaaagggtTGGTTCCCTCCCTTACTTTTCTGTAGAT
AGCTACAGAAAAGGGAGCCTGATCGCAAActtatttactttttacttatt
tatttagttACTTTAACATGTAGCAgaggttttgctttgtttttgatttt
tcgaatCCAAAATTAACTCCGACGAATTGTAGAATTTTGACCGGCGAAAT
CTTAGCAAACCAAGTGTATGGATTAGCGTgaatatgtacttgaggcggcA
AACCGGATTTTTGAACCGGGCGAATTGTAATCTTTTTGTGCCTTGGAAGC
CTCTAATTAAGACCACTGCAAGTAGAATAAAGTTCTACACCTCTTTATAT
CTTTTCTTTCCAACCAGGTACCAACGAAGTAATGCGGATGATAATCGCAC
GACACCTGTTGGGTTGaatcaagaaaaacagttttttagaaaaatgaaaa
tgatttttgtaCTTTTGATGAAGTAATTTAATATTTATAAACACTAGTGC
TTTTCAGCTATCCAATattttatttagaatttttaaatcaatatgTCAAT
ATAAATCTTTCCTTTTGAGAGTGTTTCATTTTATTCATTCCCAAGTTATG
ATTCTGTGGAAATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041368XLOC_041368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066068-exon-scaffold_45-1491911889:233634..233686TCONS_00066068-exon-scaffold_45-1491911889:233634..233686Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:233634..233686TCONS_00066068-exon-scaffold_45-1510915933:233634..233686Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:233634..233686TCONS_00066068-exon-scaffold_45-1575043694:233634..233686Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1491911889:234128..234176TCONS_00066068-exon-scaffold_45-1491911889:234128..234176Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:234128..234176TCONS_00066068-exon-scaffold_45-1510915933:234128..234176Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:234128..234176TCONS_00066068-exon-scaffold_45-1575043694:234128..234176Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1491911889:234977..235074TCONS_00066068-exon-scaffold_45-1491911889:234977..235074Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:234977..235074TCONS_00066068-exon-scaffold_45-1510915933:234977..235074Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:234977..235074TCONS_00066068-exon-scaffold_45-1575043694:234977..235074Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1491911889:239455..239607TCONS_00066068-exon-scaffold_45-1491911889:239455..239607Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:239455..239607TCONS_00066068-exon-scaffold_45-1510915933:239455..239607Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:239455..239607TCONS_00066068-exon-scaffold_45-1575043694:239455..239607Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1491911889:239700..239802TCONS_00066068-exon-scaffold_45-1491911889:239700..239802Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:239700..239802TCONS_00066068-exon-scaffold_45-1510915933:239700..239802Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:239700..239802TCONS_00066068-exon-scaffold_45-1575043694:239700..239802Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1491911889:240851..241101TCONS_00066068-exon-scaffold_45-1491911889:240851..241101Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1510915933:240851..241101TCONS_00066068-exon-scaffold_45-1510915933:240851..241101Clytia hemisphaericaexon
TCONS_00066068-exon-scaffold_45-1575043694:240851..241101TCONS_00066068-exon-scaffold_45-1575043694:240851..241101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:233634..241101 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0817155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.450237	0	2.78226e-06
Blast
[Close]
BLAST of TCONS_00066068 vs. Swiss-Prot (Human)
Match: ACAD8 (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.607e-65
Identity = 110/166 (66.27%), Postives = 133/166 (80.12%), Query Frame = 3 
Query:    3 FDQCRVPVENRIGHEGEGFNIAMNALNGGRISISSCSLGAAHQSIQLSIDYAKERKQFGNSLADFQNTQFKLAEMATDLVASRLMVRTAAEAIDSKSKNXXXXXXXXXXXXXDKCFNICNSALQLHGGYGYLKDYAVQQFMRDTRVHQILEGTNEVMRMIIARHLL 500
            F+ C VPV NRIG EG+GF IA+  LNGGRI+I+SCSLGAAH S+ L+ D+   RKQFG  LA  Q  QF LA+MAT LVA+RLMVR AA A+  + K+A  L +MAKL ATD+CF ICN ALQ+HGGYGYLKDYAVQQ++RD+RVHQILEG+NEVMR++I+R LL
Sbjct:  248 FEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLL 413
The following BLAST results are available for this feature:
BLAST of TCONS_00066068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACAD83.607e-6566.27Isobutyryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
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