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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066066 ID=TCONS_00066066|Name=TCONS_00066066|organism=Clytia hemisphaerica|type=transcript|length=1508bpRun BLAST on NCBI protein sequence of TCONS_00066066-protein >TCONS_00066066-protein ID=TCONS_00066066-protein|Name=TCONS_00066066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp MVSRSILSRILISSYQRCLSKRIILQSQRGMAGMIDAGEGLDEDRQSIQERun BLAST on NCBI transcript from alignment at scaffold_45:111414..241101+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066066 ID=TCONS_00066066|Name=TCONS_00066066|organism=Clytia hemisphaerica|type=transcript|length=129688bp|location=Sequence derived from alignment at scaffold_45:111414..241101+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_45:111414..241101+ >TCONS_00066066 ID=TCONS_00066066|Name=TCONS_00066066|organism=Clytia hemisphaerica|type=CDS|length=18675bp|location=Sequence derived from alignment at scaffold_45:111414..241101+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066066 vs. Swiss-Prot (Human)
Match: ACAD8 (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1) HSP 1 Score: 508.064 bits (1307), Expect = 7.111e-177 Identity = 247/393 (62.85%), Postives = 313/393 (79.64%), Query Frame = 3
Query: 126 RIILQS-QRGMAGMIDAGEGLDEDRQSIQELALSFAAKEMAPNMLKWDEQEHFPLDTLKSAAELGFGGIRVSEEYGGSNLSCLDASIIYEALSTGCTSTTAFLTIHNMVQGLIETYGSKEIKDNFLPQLVTCQKIASYCLTEPNSGSDAASLGTVAKLDGNEYVLSGSKMFISGGGESDLYAVMARTGGKGPKGISCILVEKGTPGLEFGKKERKVGWNSQPTRAVMFDQCRVPVENRIGHEGEGFNIAMNALNGGRISISSCSLGAAHQSIQLSIDYAKERKQFGNSLADFQNTQFKLAEMATDLVASRLMVRTAAEAIDSKSKNXXXXXXXXXXXXXDKCFNICNSALQLHGGYGYLKDYAVQQFMRDTRVHQILEGTNEVMRMIIARHLL 1301
R+++Q+ R + ID GL+E+++ Q++A FAA+EMAPNM +WD++E FP+D ++ AA+LGFGG+ + + GGS LS LD S+I+EAL+TGCTSTTA+++IHNM +I+++G++E + F P L T +K ASYCLTEP SGSDAASL T AK G+ Y+L+GSK FISG GESD+Y VM RTGG GPKGISCI+VEKGTPGL FGKKE+KVGWNSQPTRAV+F+ C VPV NRIG EG+GF IA+ LNGGRI+I+SCSLGAAH S+ L+ D+ RKQFG LA Q QF LA+MAT LVA+RLMVR AA A+ + K+A L +MAKL ATD+CF ICN ALQ+HGGYGYLKDYAVQQ++RD+RVHQILEG+NEVMR++I+R LL
Sbjct: 21 RVLVQTGHRSLTSCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLL 413 The following BLAST results are available for this feature:
BLAST of TCONS_00066066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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