TCONS_00066061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066061
Unique NameTCONS_00066061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066061 ID=TCONS_00066061|Name=TCONS_00066061|organism=Clytia hemisphaerica|type=transcript|length=1714bp
CAGTACTTCTCTACCAAAATAATACATTTTTAGTCGATGTGATAAAGTCG
AAGCAAACTGGAGAAATCACTTCAGGTTTTGTGTTACTTTTTAGAAGCTG
CACCAGTTCAATATTTCGTTCGTGAGAGGCCGTCGTCAGTTCGTTCATCC
GGCTCCTTTGGCAGTGCTTCAAACATCAGTTCACGAGGTCTTGATGATGC
CTCGAAGTTTCAAAATGCGTTCGACCATCGGAAGCAAAGTGATGGGATTT
CCATACCCAACAGGAGTGGTAGCTCACCCATGATAAACAGTATCGCTTAT
TCGCCAAACTTAGTATCCGATTCAGCGCGAACACCGCCCAATTCTTTTAA
CGCTTCTTTCACTTCATGTACACCGCCCTCTTCATCACCTTCCTTGAAAC
ATGCCATCGAAAGAAAACGACCAAGCTCGTCTGACTTCTCACGGTACAAG
CGAACTGTCGCGGAAGGTCCATCCGCCGCTGCCGCCACCTTTATACCTTT
TCCAAGTGAACAGCAACGGCCGCGCTCGAATACAGGTCCAAGTGAAGAAG
TGTTGGCACAAACGGCACGAACCATTGCTGATATCGGTGATGATATTGAA
CAAGAATACGGAAACAAAATGACGAAATTAACAACGGATTTGGTTGGCTT
TCTTTCGGAGAATACGTCGATGTCTTACGAAGTGTTTGCAGCGCACGTCA
ACGAGTTGGTTGGAGAGGACCGCAATTGGACCAACCTCGTGTTCGTCATG
CATCTTGGGAAGCGAGTGGTTCGCACAACTTCTTACGCAGGCGAATATTT
CGGAAGATTCCTCGGAAGTGCTTTTGGTGAAGAAATCGCTCGTTCGGGAA
GCACCGATCGATATGTTCGCGAGcattcgaaaaagaaatcctCTGCAGGG
GAAGAAGAAGGGTCAGCTGTTTGACGGCTATCGTGTTTTTAGAATGTTCA
AAGCGGATTTACAATGGTGGAGATGACACTTGGCATTGACGCTGTCCGGT
ATAAAATCCtcgttttgaaaatttattggaATCATcacccaaaaatattt
ttatgcccCACATATAtgccttgaaacttttttgttaaTGGAGAGAAAGA
GTTGACTGGATTCAGGCAATTTGTACAATTTTTACTATGAGAGAATGAAA
ATATAGATTTTTAGTTGACTTGAATTCAAGCGGATTTNTTTTAACGCTTC
TTTCACTTCATGTACACCGCCCTCTTCCTCACCTTCCTTGAAACATGCCA
TCGAAAGAAAACGACCAAGCTCGTCTGACTTCTCACGGTACAAGCGAACT
GTCGCGGAAGGTCCATCCGCCGCTGCCGCCACCTTTATACCTTTTCCAAG
TGAACAGCAACGGCCGCGCTCGAATACAGGTCCAAGTGAAGAAGTGTTGG
CACAAACGGCACGAACCATTGCTGATATCGGTGATGATATTGAACAAGAA
TACGGAAACAAAATGACGAAATTAACAACGGATTTGGTTGGCTTTCTTTC
GGAGAATACGTCGATGTCTTACGAAGTGTTTGCAGCGCACGTCAACGAGT
TGGTTGGAGAGGACCGCAATTGGACCAACCTCGTGTTCGTCATGCATCTT
GGGAAGCGAGTGGTTCGCACAACTTCTTACGCAGGCGAATATTTCGGAAG
ATTCCTCGGAAGTGCTTTTGGTGAAGAAATCGCTCGTTCGGGAAGCACCG
TAAGTAGTTGTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_45:50472..53259+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066061 ID=TCONS_00066061|Name=TCONS_00066061|organism=Clytia hemisphaerica|type=transcript|length=2788bp|location=Sequence derived from alignment at scaffold_45:50472..53259+ (Clytia hemisphaerica)
CAGTACTTCTCTACCAAAATAATACATTTTTAGTCGATGTGATAAAGTCG
AAGCAAACTGGAGAAATCACTTCAGGTTTTGTGTTACTTTTTAGAAGCTG
CACCAGGTGAGTTTTGCTGGCAAATGAGAGAGGACTTTGTTGGCAGCGGT
TTTTCATCAATTGTATATTGTCTCCTTTACTTTACTTTGATATTACAATA
TTACCATTCAGACCAatcatgatttttaaaacagAGTCAGACACGAAAAA
CTCTTGCATGAActatgaaaaaattctttttattttttgtgtcACCAAGA
ATGACGGTGATCAACTTTGATAAGCATTTTAAAAGCGCCAATTATTGTCA
ATGAATggtaaacttttaattttttataagatgctaaaatgtttttaagt
aGCTTTTTCTCCGTGATAATAATATCCTTTAATTTCCTTTTCGTTTCAGT
TCAATATTTCGTTCGTGAGAGGCCGTCGTCAGTTCGTTCATCCGGCTCCT
TTGGCAGTGCTTCAAACATCAGTTCACGAGGTCTTGATGATGCCTCGAAG
TTTCAAAATGCGTTCGACCATCGGAAGCAAAGTGATGGGATTTCCATACC
CAACAGGAGTGGTAGCTCACCCATGATAAACAGTATCGCTTATTCGCCAA
ACTTAGTATCCGATTCAGCGCGAACACCGCCCAATTCTTTTAACGCTTCT
TTCACTTCATGTACACCGCCCTCTTCATCACCTTCCTTGAAACATGCCAT
CGAAAGAAAACGACCAAGCTCGTCTGACTTCTCACGGTACAAGCGAACTG
TCGCGGAAGGTCCATCCGCCGCTGCCGCCACCTTTATACCTTTTCCAAGT
GAACAGCAACGGCCGCGCTCGAATACAGGTCCAAGTGAAGAAGTGTTGGC
ACAAACGGCACGAACCATTGCTGATATCGGTGATGATATTGAACAAGAAT
ACGGAAACAAAATGACGGTTAGTTTGACCACTTGTATGCACTCCGCCTTA
TTTTCTTCACGTGCTTTATACGCTATTAGCCAGTGGTTTGAATATGGATC
AGTGTCGATGCCCTTTTTCCTTCTTACTCCTTGTTTGAAAACCCCTTTTT
TCACTTACAGAAATTAACAACGGATTTGGTTGGCTTTCTTTCGGAGAATA
CGTCGATGTCTTACGAAGTGTTTGCAGCGCACGTCAACGAGTTGGTTGGA
GAGGACCGCAATTGGACCAACCTCGTGTTCGTCATGCATCTTGGGAAGCG
AGTGGTTCGCACAACTTCTTACGCAGGCGAATATTTCGGAAGATTCCTCG
GAAGTGCTTTTGGTGAAGAAATCGCTCGTTCGGGAAGCACCGTAAGTAGT
TGTTATCTTTCCATTACTCACCCTTAACTTCTTTTATAAcgagaaaaaag
aataaataaatttgaaataaggTATGGTATTTTGATTGTTTGCAGTCTAA
TCGTTAAGCatttaatagacgatatcggcttaacgaaattctccccgaat
gattacccatgatgcattgcgcaaaaaattcagtaagttaatattgtccg
tgaatttttttgcgcaatgcatcatgggtaatcattcggggagaatttcg
ttaagccgatatcgtctattaaatGCTTAACGATTATTGAAATCAAACAG
CATAAGCTGGCcgttttgctgtgaaagaggaCTGATTTTCAAAGATCATA
AataaaaatcagcttttttagAATCCATTGGAGTATCAAACTGtaatgaa
ttgaaaaatcttttatatGGATAATTTTTGTAATAGGATCGATATGTTCG
CGAGcattcgaaaaagaaatcctCTGCAGGGGAAGAAGAAGGGTCAGCTG
TTTGACGGCTATCGTGTTTTTAGAATGTTCAAAGCGGATTTACAATGGTG
GAGATGACACTTGGCATTGACGCTGTCCGGTATAAAATCCtcgttttgaa
aatttattggaATCATcacccaaaaatatttttatgcccCACATATAtgc
cttgaaacttttttgttaaTGGAGAGAAAGAGTTGACTGGATTCAGGCAA
TTTGTACAATTTTTACTATGAGAGAATGAAAATATAGATTTTTAGTTGAC
TTGAATTCAAGCGGATTTNTTTTAACGCTTCTTTCACTTCATGTACACCG
CCCTCTTCCTCACCTTCCTTGAAACATGCCATCGAAAGAAAACGACCAAG
CTCGTCTGACTTCTCACGGTACAAGCGAACTGTCGCGGAAGGTCCATCCG
CCGCTGCCGCCACCTTTATACCTTTTCCAAGTGAACAGCAACGGCCGCGC
TCGAATACAGGTCCAAGTGAAGAAGTGTTGGCACAAACGGCACGAACCAT
TGCTGATATCGGTGATGATATTGAACAAGAATACGGAAACAAAATGACGG
TTAGTTTGACCACTTGTATGCACTCCGCCTTATTTTCTTCACGTGCTTTA
TACGCTATTAGCCAGTGGTTTGAATATGGATCAGTGTCGATGCCCTTTTT
CCTTCTTACTCCTTGTTTGAAAACCCCTTTTTTCACTTACAGAAATTAAC
AACGGATTTGGTTGGCTTTCTTTCGGAGAATACGTCGATGTCTTACGAAG
TGTTTGCAGCGCACGTCAACGAGTTGGTTGGAGAGGACCGCAATTGGACC
AACCTCGTGTTCGTCATGCATCTTGGGAAGCGAGTGGTTCGCACAACTTC
TTACGCAGGCGAATATTTCGGAAGATTCCTCGGAAGTGCTTTTGGTGAAG
AAATCGCTCGTTCGGGAAGCACCGTAAGTAGTTGTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041366XLOC_041366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066061-exon-scaffold_45-1491911889:50472..50577TCONS_00066061-exon-scaffold_45-1491911889:50472..50577Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1510915933:50472..50577TCONS_00066061-exon-scaffold_45-1510915933:50472..50577Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1575043694:50472..50577TCONS_00066061-exon-scaffold_45-1575043694:50472..50577Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1491911889:50921..51438TCONS_00066061-exon-scaffold_45-1491911889:50921..51438Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1510915933:50921..51438TCONS_00066061-exon-scaffold_45-1510915933:50921..51438Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1575043694:50921..51438TCONS_00066061-exon-scaffold_45-1575043694:50921..51438Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1491911889:51582..51812TCONS_00066061-exon-scaffold_45-1491911889:51582..51812Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1510915933:51582..51812TCONS_00066061-exon-scaffold_45-1510915933:51582..51812Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1575043694:51582..51812TCONS_00066061-exon-scaffold_45-1575043694:51582..51812Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1491911889:52258..52870TCONS_00066061-exon-scaffold_45-1491911889:52258..52870Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1510915933:52258..52870TCONS_00066061-exon-scaffold_45-1510915933:52258..52870Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1575043694:52258..52870TCONS_00066061-exon-scaffold_45-1575043694:52258..52870Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1491911889:53014..53259TCONS_00066061-exon-scaffold_45-1491911889:53014..53259Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1510915933:53014..53259TCONS_00066061-exon-scaffold_45-1510915933:53014..53259Clytia hemisphaericaexon
TCONS_00066061-exon-scaffold_45-1575043694:53014..53259TCONS_00066061-exon-scaffold_45-1575043694:53014..53259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:50472..53259 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.715117	0.559289	0	0	0	0	0	0.00170678	0.000936578	0.0387079	0.134996	1.64116e-06	0	9.35071e-08	6.14528	7.21838	0.882128	2.50564	0	1.13099e-05	0	0	2.12054e-07	0	0.610711	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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