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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066059 ID=TCONS_00066059|Name=TCONS_00066059|organism=Clytia hemisphaerica|type=transcript|length=891bp
CATTATAGTAAATAAAGTTTGAAATTGTGTTCAGCAAGACACACTGTATA
CAAAATCCAGACTAACAATGCAATCCAGTGGCATCCTTCAAAGAATCTAC
AccgttaaaatttaaaatacttaaaataCTTATCCAACAAACTAAGTAGG
AAATGGACATGCTGTGACGGATGGGAAGATTTTCATTTCAGCGCCAACCA
GTCGGACATAACACATCAATATCTCAAATTCATAGACCTACATATTTTTT
ACTAGTTCAGTGTCAATTTTATGCTCAGGACCTCGTGAAAAAATGATACC
TTTagagtagaaactttcgcgaggctgcaaaatcgcgaaattacgTGAAG
CTAACTTTCGCAAATTTTACTTTTGGAACGAATTCAGCGGATataacttt
cgcgatttttagaatgttattttattttgaaaaagcgagaaaaatgcaca
aaaactgaaaactgagtatgaaatatcaagaaaaggcagaaactttcgcg
aaaaaggccaaaaatcgcgaaaatcacgaaagtttctgccatcgaagttt
ctgcccttaaagtagacATTACCCATGAAATATGCCCATGTGACGAAGGA
TTATGTCCGCTTAGGGTATCTTAGAATTCTTTATCATAATAATTCTCTCT
GATGTTGTCTCAGTCCATCATTGTATGTTGTACTCAAATAATTGAGTGTC
AAATACCGGTTCTTGCTCCCATCATTCCCTTAGCATCAATGAAATTTTTC
ATCATTGTTTATTCGAGGCTTTTCTGGCCAGTTTTTTCCCAATGGTATGA
ATGTGCttcataaaaacttttttctgaagtatttttctttgttatGATCA
TCGCAGCactcttatttttcaaaattgtggaaacttcattc Run BLAST on NCBI transcript from alignment at scaffold_45:47973..49102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066059 ID=TCONS_00066059|Name=TCONS_00066059|organism=Clytia hemisphaerica|type=transcript|length=1130bp|location=Sequence derived from alignment at scaffold_45:47973..49102+ (Clytia hemisphaerica)
CATTATAGTAAATAAAGTTTGAAATTGTGTTCAGCAAGGTAATTTCCTCT
TTTTTCATCCTGTGAGATCCCTTAGATAGCCAGAGATTTTAGTAGTATAT
TGAACCTTGCATTTTGAAACTTGCATAAACAGCCTTTTTCAAGGGTATCC
TTTTCACTAATGGGATATGACACTTTGGTCCTTGATTTTGATGGGATATT
TGTCCCGGTTTTTGGTACTGAGCGCTTGTTAATGCGCCATGTGCTTAATG
TAATATaaatttatctgttttttttagACACACTGTATACAAAATCCAGA
CTAACAATGCAATCCAGTGGCATCCTTCAAAGAATCTACAccgttaaaat
ttaaaatacttaaaataCTTATCCAACAAACTAAGTAGGAAATGGACATG
CTGTGACGGATGGGAAGATTTTCATTTCAGCGCCAACCAGTCGGACATAA
CACATCAATATCTCAAATTCATAGACCTACATATTTTTTACTAGTTCAGT
GTCAATTTTATGCTCAGGACCTCGTGAAAAAATGATACCTTTagagtaga
aactttcgcgaggctgcaaaatcgcgaaattacgTGAAGCTAACTTTCGC
AAATTTTACTTTTGGAACGAATTCAGCGGATataactttcgcgattttta
gaatgttattttattttgaaaaagcgagaaaaatgcacaaaaactgaaaa
ctgagtatgaaatatcaagaaaaggcagaaactttcgcgaaaaaggccaa
aaatcgcgaaaatcacgaaagtttctgccatcgaagtttctgcccttaaa
gtagacATTACCCATGAAATATGCCCATGTGACGAAGGATTATGTCCGCT
TAGGGTATCTTAGAATTCTTTATCATAATAATTCTCTCTGATGTTGTCTC
AGTCCATCATTGTATGTTGTACTCAAATAATTGAGTGTCAAATACCGGTT
CTTGCTCCCATCATTCCCTTAGCATCAATGAAATTTTTCATCATTGTTTA
TTCGAGGCTTTTCTGGCCAGTTTTTTCCCAATGGTATGAATGTGCttcat
aaaaacttttttctgaagtatttttctttgttatGATCATCGCAGCactc
ttatttttcaaaattgtggaaacttcattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066059-exon-scaffold_45-1491911889:47973..48010 | TCONS_00066059-exon-scaffold_45-1491911889:47973..48010 | Clytia hemisphaerica | exon |
| TCONS_00066059-exon-scaffold_45-1510915933:47973..48010 | TCONS_00066059-exon-scaffold_45-1510915933:47973..48010 | Clytia hemisphaerica | exon |
| TCONS_00066059-exon-scaffold_45-1575043694:47973..48010 | TCONS_00066059-exon-scaffold_45-1575043694:47973..48010 | Clytia hemisphaerica | exon |
| TCONS_00066059-exon-scaffold_45-1491911889:48250..49102 | TCONS_00066059-exon-scaffold_45-1491911889:48250..49102 | Clytia hemisphaerica | exon |
| TCONS_00066059-exon-scaffold_45-1510915933:48250..49102 | TCONS_00066059-exon-scaffold_45-1510915933:48250..49102 | Clytia hemisphaerica | exon |
| TCONS_00066059-exon-scaffold_45-1575043694:48250..49102 | TCONS_00066059-exon-scaffold_45-1575043694:48250..49102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:47973..49102 + |
Blast
The following BLAST results are available for this feature:
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