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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066058 ID=TCONS_00066058|Name=TCONS_00066058|organism=Clytia hemisphaerica|type=transcript|length=1087bp
TCCAGGCATAGCTCATCTTGAACCCTaatgttttttcaaattcagttttG
AATTTATGATAATGATTAAATAGTTTTTATTCTATGACTCGAACAGAGTC
TTCTAGATGGCACTAAAATAAATTTGTTGGATTTGTTAACAAACGATTGT
TTTTCAAGACCAAAGTTTTTTAGAACTTATTTCAAAAATGTGTTTGCGTT
ACGACCACATTTTGAACATTTATCTTCTTGGAAGACACACTGTATACAAA
ATCCAGACTAACAATGCAATCCAGTGGCATCCTTCAAAGAATCTACAccg
ttaaaatttaaaatacttaaaataCTTATCCAACAAACTAAGTAGGAAAT
GGACATGCTGTGACGGATGGGAAGATTTTCATTTCAGCGCCAACCAGTCG
GACATAACACATCAATATCTCAAATTCATAGACCTACATATTTTTTACTA
GTTCAGTGTCAATTTTATGCTCAGGACCTCGTGAAAAAATGATACCTTTa
gagtagaaactttcgcgaggctgcaaaatcgcgaaattacgTGAAGCTAA
CTTTCGCAAATTTTACTTTTGGAACGAATTCAGCGGATataactttcgcg
atttttagaatgttattttattttgaaaaagcgagaaaaatgcacaaaaa
ctgaaaactgagtatgaaatatcaagaaaaggcagaaactttcgcgaaaa
aggccaaaaatcgcgaaaatcacgaaagtttctgccatcgaagtttctgc
ccttaaagtagacATTACCCATGAAATATGCCCATGTGACGAAGGATTAT
GTCCGCTTAGGGTATCTTAGAATTCTTTATCATAATAATTCTCTCTGATG
TTGTCTCAGTCCATCATTGTATGTTGTACTCAAATAATTGAGTGTCAAAT
ACCGGTTCTTGCTCCCATCATTCCCTTAGCATCAATGAAATTTTTCATCA
TTGTTTATTCGAGGCTTTTCTGGCCAGTTTTTTCCCAATGGTATGAATGT
GCttcataaaaacttttttctgaagtatttttctttgttatGATCATCGC
AGCactcttatttttcaaaattgtggaaacttcattc Run BLAST on NCBI transcript from alignment at scaffold_45:47665..49102+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066058 ID=TCONS_00066058|Name=TCONS_00066058|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at scaffold_45:47665..49102+ (Clytia hemisphaerica)
TCCAGGCATAGCTCATCTTGAACCCTaatgttttttcaaattcagttttG
AATTTATGATAATGATTAAATAGTTTTTATTCTATGACTCGAACAGAGTC
TTCTAGATGGCACTAAAATAAATTTGTTGGATTTGTTAACAAACGATTGT
TTTTCAAGACCAAAGTTTTTTAGAACTTATTTCAAAAATGTGTTTGCGTT
ACGACCACATTTTGAACATTTATCTTCTTGGAAGGTGAGAAGCTTCTTTG
TCATCATGGAGTTTCCACCCTAATGAATTCGGAAACATAACATAAATTCG
ATGCAAATCATTATAGTAAATAAAGTTTGAAATTGTGTTCAGCAAGGTAA
TTTCCTCTTTTTTCATCCTGTGAGATCCCTTAGATAGCCAGAGATTTTAG
TAGTATATTGAACCTTGCATTTTGAAACTTGCATAAACAGCCTTTTTCAA
GGGTATCCTTTTCACTAATGGGATATGACACTTTGGTCCTTGATTTTGAT
GGGATATTTGTCCCGGTTTTTGGTACTGAGCGCTTGTTAATGCGCCATGT
GCTTAATGTAATATaaatttatctgttttttttagACACACTGTATACAA
AATCCAGACTAACAATGCAATCCAGTGGCATCCTTCAAAGAATCTACAcc
gttaaaatttaaaatacttaaaataCTTATCCAACAAACTAAGTAGGAAA
TGGACATGCTGTGACGGATGGGAAGATTTTCATTTCAGCGCCAACCAGTC
GGACATAACACATCAATATCTCAAATTCATAGACCTACATATTTTTTACT
AGTTCAGTGTCAATTTTATGCTCAGGACCTCGTGAAAAAATGATACCTTT
agagtagaaactttcgcgaggctgcaaaatcgcgaaattacgTGAAGCTA
ACTTTCGCAAATTTTACTTTTGGAACGAATTCAGCGGATataactttcgc
gatttttagaatgttattttattttgaaaaagcgagaaaaatgcacaaaa
actgaaaactgagtatgaaatatcaagaaaaggcagaaactttcgcgaaa
aaggccaaaaatcgcgaaaatcacgaaagtttctgccatcgaagtttctg
cccttaaagtagacATTACCCATGAAATATGCCCATGTGACGAAGGATTA
TGTCCGCTTAGGGTATCTTAGAATTCTTTATCATAATAATTCTCTCTGAT
GTTGTCTCAGTCCATCATTGTATGTTGTACTCAAATAATTGAGTGTCAAA
TACCGGTTCTTGCTCCCATCATTCCCTTAGCATCAATGAAATTTTTCATC
ATTGTTTATTCGAGGCTTTTCTGGCCAGTTTTTTCCCAATGGTATGAATG
TGCttcataaaaacttttttctgaagtatttttctttgttatGATCATCG
CAGCactcttatttttcaaaattgtggaaacttcattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066058-exon-scaffold_45-1491911889:47665..47898 | TCONS_00066058-exon-scaffold_45-1491911889:47665..47898 | Clytia hemisphaerica | exon |
| TCONS_00066058-exon-scaffold_45-1510915933:47665..47898 | TCONS_00066058-exon-scaffold_45-1510915933:47665..47898 | Clytia hemisphaerica | exon |
| TCONS_00066058-exon-scaffold_45-1575043694:47665..47898 | TCONS_00066058-exon-scaffold_45-1575043694:47665..47898 | Clytia hemisphaerica | exon |
| TCONS_00066058-exon-scaffold_45-1491911889:48250..49102 | TCONS_00066058-exon-scaffold_45-1491911889:48250..49102 | Clytia hemisphaerica | exon |
| TCONS_00066058-exon-scaffold_45-1510915933:48250..49102 | TCONS_00066058-exon-scaffold_45-1510915933:48250..49102 | Clytia hemisphaerica | exon |
| TCONS_00066058-exon-scaffold_45-1575043694:48250..49102 | TCONS_00066058-exon-scaffold_45-1575043694:48250..49102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_45 | supercontig | scaffold_45:47665..49102 + |
Blast
The following BLAST results are available for this feature:
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