TCONS_00066043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066043
Unique NameTCONS_00066043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066043 ID=TCONS_00066043|Name=TCONS_00066043|organism=Clytia hemisphaerica|type=transcript|length=3076bp
CTCAAATAACTCTGCCTTTTGATTGATAACTTAGATAGTATCGGAGAGAG
AAAAAACATATATCTTGTACTAAAATGAAACTACTCTCTAAAGTAAGTTA
GAGACTTATGAGATGGATAGACAGAAACGGCAAAGAAATGATATTGATGA
GTTTCCTTACAGAAGACCAAAACTGGACGACGATCAGGAGACATCCTGGG
ATGCTCAGTTGGTGACGTCAGAATCCAAATCACCTGAAATGAATGAAAGA
AATCAATCGGAACAAAATCTACAGTTTGGAGATATATTTTCAGCATGGCA
ACAGCAAAAATCTGAAAACAATGGCTCCAGCGTAAAAGAAGTTGATAGCG
ATAAAGCACCATACATCGTATTGGTTGGCAATGTAGGAAGTGGGAAATCA
ACCATCGTTGAAAAACTAGCAGGTGTTGATGGTCGAAGCTCTTCATCAGC
ATCCAGTGCAACCAGATCTGCTGAATATTTCTTGACTCCTGATCAAAGTC
TTCTCATTGCTGACACTCCAGGAACCAATCCTCGAAAGGATAAACTGGAA
CATAATAATGAGATTGCAGCTGCATTGAGTTATCGAGAGGTTTCCAAATT
CATAGTAGTTGTGAAAGCAAGTCTACGTATGGACCAGACACTGGATGATA
TAAAGCAGTATTATGATCGATTTAATGCTCTCCCTGAAGATCTTGTCGGT
GTTTTGGTGACTCATATGGATCTCCACAAAGAATGGGATGAGGAAGAAAT
ATTGGAAGCTATTGACGAGGACTTCGAAATTACAGACGTCGTTTTCTCAG
ATCGCCAAAAAAAGGGTTTCGACCTTTGCAAAGATGTTTTAAGAACATGC
AGAAAAACTTTTGTAATAGATATGCAGAGTGACCTGTTTTCAAGACTTTT
CAGGTTTAAGGATAGTAAtcgaaaaattctaaaagtcaCAAATGACTTCG
TTAAACGATTTAAATCactcaaaaaaagttttgaggGTCAGAGAAAGAAC
TTCGATGAAGCAGATCGGTGTCATCTTGATTGCGAGTTCTGGGCACTGTT
CAAAACACATCTTACCGAAACAGCAAAACAGGACATGGTAAAtgaattga
atttcaattttgagaGGGAGACGAAAGATATGGAGGAAGGCTATCTGATG
AACATGGTCAATCAAACTAACGCCGCAATGAATGACATACAAATTCGAAT
CGCTCGAAATCAAGATCCCTATGCATCCACCAAAAATTGCCCTCATTGCG
GTAGGATTTGTGAAAATCCAAAAGCTCAAACATGTGGTAAACCAAAGCGT
ATTGAGCTGTCAACAAATTCTCCATGTACAATGGCACATTTTACATTTAA
AATCATTGACTACAGAAAAGTCGAAatacagaaaaaaagttttggtgGTC
AATTTCAGGATAACAAGACAGGATGTGGTCAAAAAATCAGCTGGAATGAA
ATGATGAAAGTTaatcatcaaaaaatcacaCAGATACAAAATCAGGGTCC
AGTAAAACAACCTGAATCTAATCAGCGTCCAGTGGAACAACCTAAATCTG
ACCATCACGCAGATACAAAAAGCAGACAAAAGACCAAGCCCAAAAATCAA
CAGCCATTAAGTACAAGTGACACACAACGCATCAATCATGGTAGATCTCT
ACCAAAGAAGAATCCTACAAAGCATACTCATACAGAACCACCCAGATATG
TACACCAAAAAGAAGAGGCTCCGAATCAATCTTCACAACCCAACAAAGGT
GGAAGACAGAGATCAAACAACGACTTTAACCAAAACAATAAGTCGGCGAA
GTACCACCCATATGACTATTCAGAAGAGGCTCCGAATCAATCTTCACAAC
CCAACAAAGGTGGAAGACAGAGATCAAACAAcgactttaaccaaaataat
AAGTCGGCGAAGTACCACCCATATGACTATTCAGAAGAGGCTCCGAATCA
ATCTTCACAACCCAACAAAGGTGGAAGACAGAAACCAAACAACGACTCAA
ACCAAAACAATAAGTCGGCGAAATACCACCCATATGACTATCCAGAAGAG
ACTCTGAACCAATTTACACAACCCAACAAAGGTGAAAGACAGAAACCAAA
CAACGACTCAAACCAAAACAATAAATCGAAGAAGTACCCACCAAAGGACA
AACCAGAAGATGATGGCACAGTACCCTATCCTACACATACGCCTCCAAAA
GGAGGTTACCAATACCAACGAGTAAGAGAAGATAAACCGTCACATCCTGA
AAAGTTAAAGAATCCAGCTAAGGGGGGACATAAAGAGAGAAATCGAGGAA
AAACCTCACATTCAGCCTCAATGCAGAAATCTACCGATCCAAATCAACCA
GGAGAGATAACCCAAGCTATATCAAGTGCAGATTACAAAAGTGAGCCAGA
CACCACCTTACTGCTCAAAGAGCCGAATGAAAGGAGTATACGCCACCttt
tgaaaagacatttttacaaaagtttcaaaagcattAGATATTGCATTCCC
ACGTTTTTTGTTACTGTTAAAATCCTACAAAGAATTAACGAGCACGTATT
CAAGACATGCTTTGGAGATAAGAACAGAGAGTATAAGAAGCACGATCACC
TCATCCCAAAACAGCCAAAAGAACAAAACATCGAATATGTTTAAATATGT
AAAATTAATGAATTATCATAATTATAGCGATTTAAGTTAAAGGTCacatt
ggatttttttatacTCTTGAGTAAAGTGATTGAGTGAGTCCCAGGGGTGA
GGGGGTGCTGGGTTTACAGGGTaatagtttttcaatttttctttcaaccc
ttacagggactgccCAGGTTTCAAAAAGACATCTTTAAGGGCGGCACTCG
CAcgtacccttcacttgcctaagtacccctccccccccaGTGAGTGAGTG
AGCGAGCAAATTAAAGTACGTGATTAGGCTGTAAAAAACAACACCGTAAT
TGTAAGTTTATCAATTATGTAAGATTATCTTTATTTcagtttttatttaa
atattgaAACCTTAATGCAGAATGTTCCGAGATAAAAACTCTTTCCAAAA
ggtatttttattaatttcgttttttt
Run BLAST on NCBI

transcript from alignment at scaffold_449:35669..39251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066043 ID=TCONS_00066043|Name=TCONS_00066043|organism=Clytia hemisphaerica|type=transcript|length=3583bp|location=Sequence derived from alignment at scaffold_449:35669..39251- (Clytia hemisphaerica)
CTCAAATAACTCTGCCTTTTGATTGATAACTTAGATAGTATCGGAGAGAG
AAAAAACATATATCTTGTACTAAAATGAAACTACTCTCTAAAGTAAGTTA
GAGACTTATGAGATGGATAGACAGAAACGGCAAAGAAATGATATTGATGA
GTTTCCTTACAGAAGACCAAAACTGGACGACGATCAGGAGACATCCTGGG
ATGCTCAGTTGGTGACGTCAGAATCCAAATCACCTGAAATGAATGAAAGA
AATCAATCGGAACAAAATCTACAGTTTGGAGATATATTTTCAGCATGGCA
ACAGCAAAAATCTGGTAAGAAATCTGTTGTACTTCTAAAATGATTTGTTT
GAAACTCATTTGATGACGAGATCTCTGCTGTTTTTTTCTTATCCAAATCC
TTAAAGAATTCAGTTGCCGATAAACATATCTACGCGTAATTTTCGGCTTT
CATTTTATATGAAAAGATCCGGTATCCAATACCAAGGGATAAAATAAAAT
CTTATCAATATCATTGATTTTGTTTCTCTAGAAAACAATGGCTCCAGCGT
AAAAGAAGTTGATAGCGATAAAGCACCATACATCGTATTGGTTGGCAATG
TAGGAAGTGGGAAATCAACCATCGTTGAAAAACTAGCAGGTGTTGATGGT
CGAAGCTCTTCATCAGCATCCAGTGCAACCAGATCTGCTGAATATTTCTT
GACTCCTGATCAAAGTCTTCTCATTGCTGACACTCCAGGAACCAATCCTC
GAAAGGATAAACTGGAACATAATAATGAGATTGCAGCTGCATTGAGTTAT
CGAGAGGTTTCCAAATTCATAGTAGTTGTGAAAGCAAGTCTACGTATGGA
CCAGACACTGGATGATATAAAGCAGTATTATGATCGATTTAATGCTCTCC
CTGAAGATCTTGTCGGTGTTTTGGTGACTCATATGGATCTCCACAAAGAA
TGGGATGAGGAAGAAATATTGGAAGCTATTGACGAGGACTTCGAAATTAC
AGACGTCGTTTTCTCAGATCGCCAAAAAAAGGGTTTCGACCTTTGCAAAG
ATGTTTTAAGAACATGCAGAAAAACTTTTGTAATAGATATGCAGAGTGAC
CTGTTTTCAAGACTTTTCAGGTTTAAGGATAGTAATCGAAAAATTCTAAA
AGTCACAAATGACTTCGTTAAACGATTTAAATCACTCAAAAAAAGTTTTG
AGGGTCAGAGAAAGAACTTCGATGAAGCAGATCGGTGTCATCTTGATTGC
GAGTTCTGGGCACTGTTCAAAACACATCTTACCGAAACAGCAAAACAGGA
CATGGTAAATGAATTGAATTTCAATTTTGAGAGGGAGACGAAAGATATGG
AGGAAGGCTATCTGATGAACATGGTCAATCAAACTAACGCCGCAATGAAT
GACATACAAATTCGAATCGCTCGAAATCAAGATCCCTATGCATCCACCAA
AAATTGCCCTCATTGCGGTAGGATTTGTGAAAATCCAAAAGCTCAAACAT
GTGGTAAACCAAAGCGTATTGAGCTGTCAACAAATTCTCCATGTACAATG
GCACATTTTACATTTAAAATCATTGACTACAGAAAAGTCGAAATACAGAA
AAAAAGTTTTGGTGGTCAATTTCAGGATAACAAGACAGGATGTGGTCAAA
AAATCAGCTGGAATGAAATGATGAAAGTTAATCATCAAAAAATCACACAG
ATACAAAATCAGGGTCCAGTAAAACAACCTGAATCTAATCAGCGTCCAGT
GGAACAACCTAAATCTGACCATCACGCAGATACAAAAAGCAGACAAAAGA
CCAAGCCCAAAAATCAACAGCCATTAAGTACAAGTGACACACAACGCATC
AATCATGGTAGATCTCTACCAAAGAAGAATCCTACAAAGCATACTCATAC
AGAACCACCCAGATATGTACACCAAAAAGAAGAGGCTCCGAATCAATCTT
CACAACCCAACAAAGGTGGAAGACAGAGATCAAACAACGACTTTAACCAA
AACAATAAGTCGGCGAAGTACCACCCATATGACTATTCAGAAGAGGCTCC
GAATCAATCTTCACAACCCAACAAAGGTGGAAGACAGAGATCAAACAACG
ACTTTAACCAAAATAATAAGTCGGCGAAGTACCACCCATATGACTATTCA
GAAGAGGCTCCGAATCAATCTTCACAACCCAACAAAGGTGGAAGACAGAA
ACCAAACAACGACTCAAACCAAAACAATAAGTCGGCGAAATACCACCCAT
ATGACTATCCAGAAGAGACTCTGAACCAATTTACACAACCCAACAAAGGT
GAAAGACAGAAACCAAACAACGACTCAAACCAAAACAATAAGTCGGCGAA
ATACCACCCATATGACTATCCAGAAGAGACTCTGAACCAATTTACACAAC
CCAGCAAAGGTGAAAGAGGTATTTCAAACAACGACTCAAACCAAAACAAT
AAGTCGAGGAAATATCCACCAAAGGACTATCCACAAGAGACTCTGAATCA
ATCTTCACAACCCAGCAAAGGTGAAAGAGGCAGATCAAACAACGACTCAA
ACCAAAACAATAGATCGAAGAAGTACCCACCAAAGGACAAACCAGAAGAT
GATGGCACAGTACCCTATCCTACACATACGCCTCCAAAAGGAGGTTACCA
ATACCAACGAGTAAGAGAAGATAAACCGTCACATANCCTACACATACGCC
TCCAAAAGGAGGTTACCAATACCAACGAGTAAGAGAAGACAAACCGTCAC
ATCCTGAAAAGTTAAAGAATCCAGCTAAGGGGGGACATAAAGAGAGAAAT
CGAGGAAAAACCTCACATTCAGCCTCAATGCAGAAATCTACCGATCCAAA
TCAACCAGGAGAGATAACCCAAGCTATATCAAGTGCAGATTACAAAAGTG
AGCCAGACACCACCTTACTGCTCAAAGAGCCGAATGAAAGGAGTATACGC
CACCTTTTGAAAAGACATTTTTACAAAAGTTTCAAAAGCATTAGATATTG
CATTCCCACGTTTTTTGTTACTGTTAAAATCCTACAAAGAATTAACGAGC
ACGTATTCAAGACATGCTTTGGAGATAAGAACAGAGAGTATAAGAAGCAC
GATCACCTCATCCCAAAACAGCCAAAAGAACAAAACATCGAATATGTTTA
AATATGTAAAATTAATGAATTATCATAATTATAGCGATTTAAGTTAAAGG
TCACATTGGATTTTTTTATACTCTTGAGTAAAGTGATTGAGTGAGTCCCA
GGGGTGAGGGGGTGCTGGGTTTACAGGGTAATAGTTTTTCAATTTTTCTT
TCAACCCTTACAGGGACTGCCCAGGTTTCAAAAAGACATCTTTAAGGGCG
GCACTCGCACGTACCCTTCACTTGCCTAAGTACCCCTCCCCCCCCAGTGA
GTGAGTGAGCGAGCAAATTAAAGTACGTGATTAGGCTGTAAAAAACAACA
CCGTAATTGTAAGTTTATCAATTATGTAAGATTATCTTTATTTCAGTTTT
TATTTAAATATTGAAACCTTAATGCAGAATGTTCCGAGATAAAAACTCTT
TCCAAAAGGTATTTTTATTAATTTCGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041360XLOC_041360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066043-exon-scaffold_449-1575043694:38938..39251TCONS_00066043-exon-scaffold_449-1575043694:38938..39251Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1575043694:36911..38720TCONS_00066043-exon-scaffold_449-1575043694:36911..38720Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1575043694:36570..36688TCONS_00066043-exon-scaffold_449-1575043694:36570..36688Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1575043694:35669..36501TCONS_00066043-exon-scaffold_449-1575043694:35669..36501Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1510915933:38938..39251TCONS_00066043-exon-scaffold_449-1510915933:38938..39251Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1510915933:36911..38720TCONS_00066043-exon-scaffold_449-1510915933:36911..38720Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1510915933:36570..36688TCONS_00066043-exon-scaffold_449-1510915933:36570..36688Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1510915933:35669..36501TCONS_00066043-exon-scaffold_449-1510915933:35669..36501Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1491911889:38938..39251TCONS_00066043-exon-scaffold_449-1491911889:38938..39251Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1491911889:36911..38720TCONS_00066043-exon-scaffold_449-1491911889:36911..38720Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1491911889:36570..36688TCONS_00066043-exon-scaffold_449-1491911889:36570..36688Clytia hemisphaericaexon
TCONS_00066043-exon-scaffold_449-1491911889:35669..36501TCONS_00066043-exon-scaffold_449-1491911889:35669..36501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_449supercontigscaffold_449:35669..39251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.10903	0	0	0	0	0	0	0	0	0	0	0.149931	0	0.254519	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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