TCONS_00066034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066034
Unique NameTCONS_00066034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066034 ID=TCONS_00066034|Name=TCONS_00066034|organism=Clytia hemisphaerica|type=transcript|length=1145bp
TTGAATTTTATggcaaaaattcacttttttgttgTGAAATTCTTTTAAAG
GAAATAAAAGGTATTAAAAAACCTTGGATGAAGTGACATCACAATTTAGC
TTGCGAGATTCTTGAAATTATGAAGTCATCACAGtgtcaaaaaaagattc
aaaagtaAAAACCAAGTTTCTACTGTGACtgacctactttcagcaaagat
ggcggattattttgcttcacctgtCTTGCCTTGGGAAAGatagagtagct
ctatctagtctTTTATATAAGATACCTGTGGTAGGTACCAGGTGTCATAG
GACACTTTACTGCAAGATGACTGAAAGCATGTCAGGTCATTAagattttt
aacatttaacataTATTTTCATTATCTTTTAGTCAAGTAATTGATAAGAA
TGGCTGCTGGCCTTAGCGCTTATCGTGACCAACATTTCAAAGGTACTCGT
AATGAACTTGAAAGGAAGCTTGAAGGGAGCAATACATTATATGTTGgtaa
tttgtcatttttcactACCGAAGAACAAATTTATGAATTATTTTCGAAAT
CAGGTGATGTTAAAAAGATTGTAATGGGCCTTGATCGTGTTAGGAAAACC
CCATGTGGATTTTGTTTTGTGGAATATTACTTCCGCAGTGGGGCTGAAGA
TTCGGTCCGATATGTTAATGGAACTAGACTGGATGGTCGCATCGTGAGAA
CCGATTGGGATGCAGGCTTTGAGGAAGGGCGCCAATATGGTAGAGGTCGC
AGTGGAGGTCAAGTAAGAGATGAATATAGAACAGACTTTGATGATGAACG
AGGTGGCTTTGGTAGATTATACCAAGAACGAAACAAAGGAAATAATGATA
TgatgattgattgattaaaaaaggtgtaaaaataATGATAGTATCATTGG
TTTTCTAAATGGATTTTTCTGCTATTTACGAATGTGATGATTACCTTATT
TGGGTGTTAGTTGGATATTTCATTCTCTTTTTGTATTTCGAAAATACATC
TTAGATATTtgattataacatttttttactttgtaggcttcttgtattta
tttttttagtgttttattaagagtaaaattttaataaatcgagAGTCATG
AGAGAGTTTTTTTGTAGTATCCTTTAGAAATCTTTCAGGATCACC
Run BLAST on NCBI

transcript from alignment at scaffold_449:21452..22596+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066034 ID=TCONS_00066034|Name=TCONS_00066034|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at scaffold_449:21452..22596+ (Clytia hemisphaerica)
TTGAATTTTATggcaaaaattcacttttttgttgTGAAATTCTTTTAAAG
GAAATAAAAGGTATTAAAAAACCTTGGATGAAGTGACATCACAATTTAGC
TTGCGAGATTCTTGAAATTATGAAGTCATCACAGtgtcaaaaaaagattc
aaaagtaAAAACCAAGTTTCTACTGTGACtgacctactttcagcaaagat
ggcggattattttgcttcacctgtCTTGCCTTGGGAAAGatagagtagct
ctatctagtctTTTATATAAGATACCTGTGGTAGGTACCAGGTGTCATAG
GACACTTTACTGCAAGATGACTGAAAGCATGTCAGGTCATTAagattttt
aacatttaacataTATTTTCATTATCTTTTAGTCAAGTAATTGATAAGAA
TGGCTGCTGGCCTTAGCGCTTATCGTGACCAACATTTCAAAGGTACTCGT
AATGAACTTGAAAGGAAGCTTGAAGGGAGCAATACATTATATGTTGgtaa
tttgtcatttttcactACCGAAGAACAAATTTATGAATTATTTTCGAAAT
CAGGTGATGTTAAAAAGATTGTAATGGGCCTTGATCGTGTTAGGAAAACC
CCATGTGGATTTTGTTTTGTGGAATATTACTTCCGCAGTGGGGCTGAAGA
TTCGGTCCGATATGTTAATGGAACTAGACTGGATGGTCGCATCGTGAGAA
CCGATTGGGATGCAGGCTTTGAGGAAGGGCGCCAATATGGTAGAGGTCGC
AGTGGAGGTCAAGTAAGAGATGAATATAGAACAGACTTTGATGATGAACG
AGGTGGCTTTGGTAGATTATACCAAGAACGAAACAAAGGAAATAATGATA
TgatgattgattgattaaaaaaggtgtaaaaataATGATAGTATCATTGG
TTTTCTAAATGGATTTTTCTGCTATTTACGAATGTGATGATTACCTTATT
TGGGTGTTAGTTGGATATTTCATTCTCTTTTTGTATTTCGAAAATACATC
TTAGATATTtgattataacatttttttactttgtaggcttcttgtattta
tttttttagtgttttattaagagtaaaattttaataaatcgagAGTCATG
AGAGAGTTTTTTTGTAGTATCCTTTAGAAATCTTTCAGGATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041354XLOC_041354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066034-exon-scaffold_449-1491911889:21452..22596TCONS_00066034-exon-scaffold_449-1491911889:21452..22596Clytia hemisphaericaexon
TCONS_00066034-exon-scaffold_449-1510915933:21452..22596TCONS_00066034-exon-scaffold_449-1510915933:21452..22596Clytia hemisphaericaexon
TCONS_00066034-exon-scaffold_449-1575043694:21452..22596TCONS_00066034-exon-scaffold_449-1575043694:21452..22596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_449supercontigscaffold_449:21452..22596 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.90513	2.30896	3.78068	7.87532	23.9219	27.6879	13.0129	17.583	3.5924	4.87402	2.9548	4.62068	2.83309	2.9422	4.6216	4.13401	7.41189	4.73157	0.998302	0.464289	4.57204	4.06607	8.33161	5.96315	8.17834	9.49866	5.07659	3.97016	4.16349	5.15604
Blast
[Close]
BLAST of TCONS_00066034 vs. Swiss-Prot (Human)
Match: NCBP2 (Nuclear cap-binding protein subunit 2 OS=Homo sapiens GN=NCBP2 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.034e-57
Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 1 
Query:  412 LSAYRDQHFKGTRNELERKLEGSNTLYVGNLSFFTTEEQIYELFSKSGDVKKIVMGLDRVRKTPCGFCFVEYYFRSGAEDSVRYVNGTRLDGRIVRTDWDAGFEEXXXXXXXXXXXXXXDEYRTDFDDERGGFGRLYQER 831
            LS YRDQHF+G   E E+ L+ S TLYVGNLSF+TTEEQIYELFSKSGD+KKI+MGLD+++KT CGFCFVEYY R+ AE+++RY+NGTRLD RI+RTDWDAGF+EGRQYGRGRSGGQVRDEYR D+D  RGG+G+L Q +
Sbjct:   17 LSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
The following BLAST results are available for this feature:
BLAST of TCONS_00066034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCBP24.034e-5773.57Nuclear cap-binding protein subunit 2 OS=Homo sapi... [more]
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