TCONS_00066031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066031
Unique NameTCONS_00066031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066031 ID=TCONS_00066031|Name=TCONS_00066031|organism=Clytia hemisphaerica|type=transcript|length=410bp
CCTTGTTTACCTTCCGAAAACAACTAAAATCCTTCAGACCCTTCTGTGGT
CCGGCTTGGGCAGAATAAAAATCAGAATGGCGCCCAATACTTCCAGGCCA
CTTATCAGCATCATCCAGTTTATCAAAATGCTCTAAGTGTCCTCCAGGCT
GTAGGCAAGAAGAAATGCGACATACAATTTGAATGTTTAGTTTGCCTCTT
CGTAAAATATATACATCTAGTAAAATATGTGTATGATATATAGCTAACAT
AAATGTATGATATATAGCTAAAATAAATGTATGATATATAGCTAAAATAA
ATGTATTATATAGCTTCAAATATATGTTTATGATATAGCTTCAAATATAT
GTTTATCATATATAGTTAAAAGAAGATTTTACAATTCgttttcatcttta
tttgcATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_448:853110..853519

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066031 ID=TCONS_00066031|Name=TCONS_00066031|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at scaffold_448:853110..853519 (Clytia hemisphaerica)
AAAATgcaaataaagatgaaaacGAATTGTAAAATCTTCTTTTAACTATA
TATGATAAACATATATTTGAAGCTATATCATAAACATATATTTGAAGCTA
TATAATACATTTATTTTAGCTATATATCATACATTTATTTTAGCTATATA
TCATACATTTATGTTAGCTATATATCATACACATATTTTACTAGATGTAT
ATATTTTACGAAGAGGCAAACTAAACATTCAAATTGTATGTCGCATTTCT
TCTTGCCTACAGCCTGGAGGACACTTAGAGCATTTTGATAAACTGGATGA
TGCTGATAAGTGGCCTGGAAGTATTGGGCGCCATTCTGATTTTTATTCTG
CCCAAGCCGGACCACAGAAGGGTCTGAAGGATTTTAGTTGTTTTCGGAAG
GTAAACAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041353XLOC_041353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066031-exon-scaffold_448-1491911889:853110..853519TCONS_00066031-exon-scaffold_448-1491911889:853110..853519Clytia hemisphaericaexon
TCONS_00066031-exon-scaffold_448-1510915933:853110..853519TCONS_00066031-exon-scaffold_448-1510915933:853110..853519Clytia hemisphaericaexon
TCONS_00066031-exon-scaffold_448-1575043694:853110..853519TCONS_00066031-exon-scaffold_448-1575043694:853110..853519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:853110..853519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.882531	0.172121	0.599548	0.586564	1.6662	1.31665	1.36156	1.69957	0.743692	1.28966	3.04002	1.05797	0.704332	0	0.200452	0.752905	0	0.407432	0	0.589024	1.19459	0.998881	0.809514	0.735966	0.189507	1.01478	0	0.258296	0.587724	0.199599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top