TCONS_00066025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066025
Unique NameTCONS_00066025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066025 ID=TCONS_00066025|Name=TCONS_00066025|organism=Clytia hemisphaerica|type=transcript|length=773bp
ccccccttcttcatttttcggAAAGTGTCATCCCCCCTTCAGAAAGGGGG
GAACACACTATGAAACCAATCACCATTACTAGTCCAATCCCCTATCCTCA
CTGACATCTCCATTCCTCGCTATTTTTCAATGTTCCTCTTCTTTTTCTCA
GCATTTCCCAGAAactttattactttattttatCATTCCTCACTCATTCC
TCGAGTACGTTGCTCAGGAATGGAGAtacttcttcttcattttaatATTG
TTCCTCATCTATTTTTCAAACGCTCCAGAGGAAAGGATATTCATGGCGAT
ATTTAAAAACATTCCTCATTGCTCCTCAGGAATAGGCATTTTCAGAGCTG
TTATATTTCCATGGAAAAGATATTTGATAAATAAGGGCTTTTTACAACct
gtgtttttcaaaaatccaggtacAAAACATGGAAAGATGGACAGAGTTCA
TTAGTTCctttaaaaaacataaaaataaagatGATAACAAAAGTAACAGA
ATATATACTTTATCTCTGTTTATCTTGACtttcattttcgaaaacttCAC
AAAAGAGGTTCCTCGAAGTGGATTCGTACTAAACAATTATTCCCAAGGAA
GTAGTGACAAATGCTGTACATGAATGTCCACTCCttaggaacgttcgagg
aatacAGGAAGAAAGATACAGTGAAGAAGAAATAtttccattcctgagga
acgtttgAGGAACAAGTAAACACATAAAAATGACGTTATAAAATGTCCAT
TCTTCAGGAATGTTTGAGGAATA
Run BLAST on NCBI

transcript from alignment at scaffold_448:714175..714947

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066025 ID=TCONS_00066025|Name=TCONS_00066025|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at scaffold_448:714175..714947 (Clytia hemisphaerica)
TATTCCTCAAACATTCCTGAAGAATGGACATTTTATAACGTCATTTTTAT
GTGTTTACTTGTTCCTcaaacgttcctcaggaatggaaaTATTTCTTCTT
CACTGTATCTTTCTTCCTgtattcctcgaacgttcctaaGGAGTGGACAT
TCATGTACAGCATTTGTCACTACTTCCTTGGGAATAATTGTTTAGTACGA
ATCCACTTCGAGGAACCTCTTTTGTGaagttttcgaaaatgaaaGTCAAG
ATAAACAGAGATAAAGTATATATTCTGTTACTTTTGTTATCatctttatt
tttatgttttttaaagGAACTAATGAACTCTGTCCATCTTTCCATGTTTT
gtacctggatttttgaaaaacacagGTTGTAAAAAGCCCTTATTTATCAA
ATATCTTTTCCATGGAAATATAACAGCTCTGAAAATGCCTATTCCTGAGG
AGCAATGAGGAATGTTTTTAAATATCGCCATGAATATCCTTTCCTCTGGA
GCGTTTGAAAAATAGATGAGGAACAATattaaaatgaagaagaagtaTCT
CCATTCCTGAGCAACGTACTCGAGGAATGAGTGAGGAATGataaaataaa
gtaataaagtTTCTGGGAAATGCTGAGAAAAAGAAGAGGAACATTGAAAA
ATAGCGAGGAATGGAGATGTCAGTGAGGATAGGGGATTGGACTAGTAATG
GTGATTGGTTTCATAGTGTGTTCCCCCCTTTCTGAAGGGGGGATGACACT
TTccgaaaaatgaagaagggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041347XLOC_041347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066025-exon-scaffold_448-1491911889:714175..714947TCONS_00066025-exon-scaffold_448-1491911889:714175..714947Clytia hemisphaericaexon
TCONS_00066025-exon-scaffold_448-1510915933:714175..714947TCONS_00066025-exon-scaffold_448-1510915933:714175..714947Clytia hemisphaericaexon
TCONS_00066025-exon-scaffold_448-1575043694:714175..714947TCONS_00066025-exon-scaffold_448-1575043694:714175..714947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:714175..714947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0629038	0.122682	0.142446	0.209041	0.169659	0	0	0.0757121	0	0.196976	0.06373	0.0837872	0.376518	0.434464	0	0.0383318	0	0	0.401209	0.139945	0.121638	0.0889961	0.144249	0.0655714	0.270148	0.301376	0.431268	0.276156	0.768001	0.56907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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