TCONS_00066020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066020
Unique NameTCONS_00066020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066020 ID=TCONS_00066020|Name=TCONS_00066020|organism=Clytia hemisphaerica|type=transcript|length=650bp
AAATAATGTCTCATTTTTTCATGTTTCctttaaattgtaaaatgtacaaa
agattttttttttggttcagtaAATTATAAAGGAATTATTAGATAATAAG
GGTAACAAAAAAATTCCTAAGTTAAGccaatttcaataaaaaacgaCAGC
AGCGAAGTTCAACAGAAAACTAATCATATAAAGTCACCTGTATTTAGCCT
GACAGGTAACATTTTTATcctcttgaaaaagaaaaagtaaaaaatacagc
AGGTCTTTGGcaaattaatttttatgaataagctcttttttaaaaaagtg
tgtagATAAAGATTTTTAGACTCGaagcaataaaaacaaaatacaaacaa
aCGTCACatataaaatttctaaaaagggaaaaaaatgaatcctgaaaaaa
gtttcaaccCAATAATAAAAGCTTATACGAAGACAAGTACGCAGGCAACA
TAATAGTATGGCCTTGTCACTGAGCTCAATATGAGGCAAAGCAGCAAAAA
TAgcaccctaatggtagcactactcaacagcggtgtaaatgcatcgataG
CGCTAGGTCTACATTTCTTTGTGTGGGTACCACTTAAAAACAAATGCCGA
TCAAAAATAGCGGATACAGCTTAATCcaggtttataaaggtcagtgggct
Run BLAST on NCBI

transcript from alignment at scaffold_448:544633..545282

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066020 ID=TCONS_00066020|Name=TCONS_00066020|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_448:544633..545282 (Clytia hemisphaerica)
agcccactgacctttataaacctgGATTAAGCTGTATCCGCTATTTTTGA
TCGGCATTTGTTTTTAAGTGGTACCCACACAAAGAAATGTAGACCTAGCG
CtatcgatgcatttacaccgctgttgagtagtgctaccattagggtgcTA
TTTTTGCTGCTTTGCCTCATATTGAGCTCAGTGACAAGGCCATACTATTA
TGTTGCCTGCGTACTTGTCTTCGTATAAGCTTTTATTATTGggttgaaac
ttttttcaggattcatttttttccctttttagaaattttatatGTGACGt
ttgtttgtattttgtttttattgcttCGAGTCTAAAAATCTTTATctaca
cacttttttaaaaaagagcttattcataaaaattaatttgCCAAAGACCT
gctgtattttttactttttctttttcaagaggATAAAAATGTTACCTGTC
AGGCTAAATACAGGTGACTTTATATGATTAGTTTTCTGTTGAACTTCGCT
GCTGtcgttttttattgaaattggCTTAACTTAGGAATTTTTTTGTTACC
CTTATTATCTAATAATTCCTTTATAATTtactgaaccaaaaaaaaaatct
tttgtacattttacaatttaaagGAAACATGAAAAAATGAGACATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041343XLOC_041343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066020-exon-scaffold_448-1491911889:544633..545282TCONS_00066020-exon-scaffold_448-1491911889:544633..545282Clytia hemisphaericaexon
TCONS_00066020-exon-scaffold_448-1510915933:544633..545282TCONS_00066020-exon-scaffold_448-1510915933:544633..545282Clytia hemisphaericaexon
TCONS_00066020-exon-scaffold_448-1575043694:544633..545282TCONS_00066020-exon-scaffold_448-1575043694:544633..545282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:544633..545282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.83811	3.68714	10.2929	14.4367	30.7024	24.3472	25.7538	32.7282	17.2192	19.3975	14.5079	13.0195	10.7007	11.1684	11.1919	12.6479	14.2526	19.0653	6.75596	6.53269	20.0678	18.6662	15.4042	14.8432	6.13255	13.1047	15.8847	15.4222	11.5186	9.82518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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