TCONS_00066010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066010
Unique NameTCONS_00066010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066010 ID=TCONS_00066010|Name=TCONS_00066010|organism=Clytia hemisphaerica|type=transcript|length=866bp
GTTCAGTCCTTCTATAAATctgtcaaaacaaaaatatttaacttttgtGA
GTTTAAGAGTACAGTTCGACGTTAAAAGGTCAAACCTTATAAGACAAGAA
GTAATTTGACGTATCACTGTGTACTGTTTGTAGTTTCAGAATTAGAAACA
GCGTATATTGAATATTTGCACAGGGATATATAGTTACGTAAAACCTTACA
ATATGGTCGTCAAAAGAGCGCTTGTTTTGATCGCTGATGGTTCTGAAGAA
ATAGAAGCTGTGACGTCAATCGATGTTTTACGACGAGCTGATATTGACGT
TACCGTTGCTGGACTTTCTGATTCCGTCAAATGCAGTCGTGACGTCGTTA
TAAGTCCAGATTGTCCTatccaaaatgttaaaaaccttttttacgATGCT
GTTATTCTTCCTGGTGGTCTTAAAGGTGCTGAGGTTATGTGCAGGTCTGA
CGATGTCAAGCAGATCTTGAACATGCACCATAAAGCAGGGAACATTATAG
GCGCAATATGTGCCGCGCCGTTAGTTCTTCAAGCACATAATATCGCTAAA
GGAAAACGTGTTACGTCGTACCCGTCCGTTCAACGTAAACTTGATATTGA
TTACGCGTATTCGACGAAACGGGTCGTTCGTGACGGGAATATAATCACGA
GCCGTGGCCCTGGAACGTCGTTCGAATTCGCCTTGGAAATTGTTGAAGCC
TTAAAAGGAGCAGCTTGCGTACACCAATTAAAAAGTGACATGCTATTagt
ataaaacaaatttttgtaagCAATTTTATACAAAACTTTATCAATTTTCG
CATGATTTAATTtgcttattttgatatttttcagattAAGATTGAATACA
AAATCGTTATTGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00066010-protein

>TCONS_00066010-protein ID=TCONS_00066010-protein|Name=TCONS_00066010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MVVKRALVLIADGSEEIEAVTSIDVLRRADIDVTVAGLSDSVKCSRDVVI
SPDCPIQNVKNLFYDAVILPGGLKGAEVMCRSDDVKQILNMHHKAGNIIG
AICAAPLVLQAHNIAKGKRVTSYPSVQRKLDIDYAYSTKRVVRDGNIITS
RGPGTSFEFALEIVEALKGAACVHQLKSDMLLV
Run BLAST on NCBI

transcript from alignment at scaffold_448:137168..138033

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066010 ID=TCONS_00066010|Name=TCONS_00066010|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at scaffold_448:137168..138033 (Clytia hemisphaerica)
TTGACAATAACGATTTTGTATTCAATCTTaatctgaaaaatatcaaaata
agcaAATTAAATCATGCGAAAATTGATAAAGTTTTGTATAAAATTGctta
caaaaatttgttttatactAATAGCATGTCACTTTTTAATTGGTGTACGC
AAGCTGCTCCTTTTAAGGCTTCAACAATTTCCAAGGCGAATTCGAACGAC
GTTCCAGGGCCACGGCTCGTGATTATATTCCCGTCACGAACGACCCGTTT
CGTCGAATACGCGTAATCAATATCAAGTTTACGTTGAACGGACGGGTACG
ACGTAACACGTTTTCCTTTAGCGATATTATGTGCTTGAAGAACTAACGGC
GCGGCACATATTGCGCCTATAATGTTCCCTGCTTTATGGTGCATGTTCAA
GATCTGCTTGACATCGTCAGACCTGCACATAACCTCAGCACCTTTAAGAC
CACCAGGAAGAATAACAGCATcgtaaaaaaggtttttaacattttggatA
GGACAATCTGGACTTATAACGACGTCACGACTGCATTTGACGGAATCAGA
AAGTCCAGCAACGGTAACGTCAATATCAGCTCGTCGTAAAACATCGATTG
ACGTCACAGCTTCTATTTCTTCAGAACCATCAGCGATCAAAACAAGCGCT
CTTTTGACGACCATATTGTAAGGTTTTACGTAACTATATATCCCTGTGCA
AATATTCAATATACGCTGTTTCTAATTCTGAAACTACAAACAGTACACAG
TGATACGTCAAATTACTTCTTGTCTTATAAGGTTTGACCTTTTAACGTCG
AACTGTACTCTTAAACTCacaaaagttaaatatttttgttttgacagATT
TATAGAAGGACTGAAC

Coding sequence (CDS) from alignment at scaffold_448:137168..138033

>TCONS_00066010 ID=TCONS_00066010|Name=TCONS_00066010|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_448:137168..138033 (Clytia hemisphaerica)
ttatactAATAGCATGTCACTTTTTAATTGGTGTACGCAAGCTGCTCCTT
TTAAGGCTTCAACAATTTCCAAGGCGAATTCGAACGACGTTCCAGGGCCA
CGGCTCGTGATTATATTCCCGTCACGAACGACCCGTTTCGTCGAATACGC
GTAATCAATATCAAGTTTACGTTGAACGGACGGGTACGACGTAACACGTT
TTCCTTTAGCGATATTATGTGCTTGAAGAACTAACGGCGCGGCACATATT
GCGCCTATAATGTTCCCTGCTTTATGGTGCATGTTCAAGATCTGCTTGAC
ATCGTCAGACCTGCACATAACCTCAGCACCTTTAAGACCACCAGGAAGAA
TAACAGCATcgtaaaaaaggtttttaacattttggatAGGACAATCTGGA
CTTATAACGACGTCACGACTGCATTTGACGGAATCAGAAAGTCCAGCAAC
GGTAACGTCAATATCAGCTCGTCGTAAAACATCGATTGACGTCACAGCTT
CTATTTCTTCAGAACCATCAGCGATCAAAACAAGCGCTCTTTTGACGACC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041333XLOC_041333Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066010-proteinTCONS_00066010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066010-exon-scaffold_448-1491911889:137168..138033TCONS_00066010-exon-scaffold_448-1491911889:137168..138033Clytia hemisphaericaexon
TCONS_00066010-exon-scaffold_448-1510915933:137168..138033TCONS_00066010-exon-scaffold_448-1510915933:137168..138033Clytia hemisphaericaexon
TCONS_00066010-exon-scaffold_448-1575043694:137168..138033TCONS_00066010-exon-scaffold_448-1575043694:137168..138033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:137168..138033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.218464	0	0.208275	0.12999	0.455044	0.563646	0.0547088	0.323671	1.22106	0.522151	0	0.0329058	177.716	164.328	1.14806	0.360407	12.8436	10.6958	11.64	13.7347	12.581	14.2293	0.148088	0.0790219	0	0.183194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029062Class_I_gatase-like
IPR006287DJ1
IPR002818DJ-1/PfpI
Blast
[Close]
BLAST of TCONS_00066010 vs. Swiss-Prot (Human)
Match: PARK7 (Protein/nucleic acid deglycase DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.457e-52
Identity = 95/187 (50.80%), Postives = 122/187 (65.24%), Query Frame = 2 
Query:  203 MVVKRALVLIADGSEEIEAVTSIDVLRRADIDVTVAGLS--DSVKCSRDVVISPDCPIQNVKNLF-YDAVILPGGLKGAEVMCRSDDVKQILNMHHKAGNIIGAICAAPLVLQAHNIAKGKRVTSYPSVQRKL--DIDYAYSTKRVVRDGNIITSRGPGTSFEFALEIVEALKGAACVHQLKSDMLL 748
            M  KRALV++A G+EE+E V  +DV+RRA I VTVAGL+  D V+CSRDVVI PD  +++ K    YD V+LPGG  GA+ +  S  VK+IL        +I AICA P  L AH I  G +VT++P  + K+     Y YS  RV +DG I+TSRGPGTSFEFAL IVEAL G     Q+K+ ++L
Sbjct:    1 MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
The following BLAST results are available for this feature:
BLAST of TCONS_00066010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PARK71.457e-5250.80Protein/nucleic acid deglycase DJ-1 OS=Homo sapien... [more]
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