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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065998 ID=TCONS_00065998|Name=TCONS_00065998|organism=Clytia hemisphaerica|type=transcript|length=3195bpRun BLAST on NCBI transcript from alignment at scaffold_448:678636..695801- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065998 ID=TCONS_00065998|Name=TCONS_00065998|organism=Clytia hemisphaerica|type=transcript|length=17166bp|location=Sequence derived from alignment at scaffold_448:678636..695801- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065998 vs. Swiss-Prot (Human)
Match: HEAT1 (HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3) HSP 1 Score: 248.054 bits (632), Expect = 4.190e-67 Identity = 245/960 (25.52%), Postives = 465/960 (48.44%), Query Frame = 1
Query: 316 LVTSLFATLESCL-LVPGS----EFVKQLCLNVLTNLTQQ---DKLK-----LNFHCFKMEFLLDCLRSTEDPQTQENCLQLISATAVLFPTHILHSVMHVFSFMGGTLLKIDNEHTFNVIKKTIHTILPPILQVKEKSSRKRLSDSSIQEVVLDAIQAFVASCPHCPEHRREFILQELLKAIGIEDNLGNTMXXXXXXXXXXXXXXXXXXXXXXXXXXXMKEVEGKNMYSRMTLDFCIHFFSLYDIPTQLSTVNKMIRYLSTLSIQKANT-------RKKGRLGAVDALFDTHNEGEKKSRLFIYTVISFIDHVLKSLSADQQLHVIVASQN---FTRTFLALTEAFIHYADLLENSIKDFENNTMSRAFVKKLLAKTCHVMEMSFKLLPFITYMELLAGLMQKTQILLKTKAFXXXXXXXXXXXXXXXXXXXXXXXXXPIIHNDVTSLQKKRKVDPNM-----LQLQLFAMKLIVIRVSGNHPELFVSWLPITSALCAGANTNDM-VSINAMXXXXXXXXXXXXXXXXXXXDIVQPMLQKLSHSIENISSSKDTLLMVTCIMSLQKIFISVPKFMSPYINPIFTKISHIEXXXXXXXXXXXXXXGVVEKFKTNLGEKVAPRILFPIVKEMVSMATNDSSNTNTLVTCLDIYRISLDQMTSSEINDVFKTDIVSLFQVLLQQSSNYEGEMSENMLE----TETIKTFCKLAL--RMTEKSLRHIYTQLFNWATKDNELVSRKMLVFYRLSVSMATTLQGLFLLFVHELLEKSADVL----------SFLSKVTAPKDMTLSRELLICVMDCFTSIFTYDTHGFMNRERFQMVAKPIVQQIETSLFEEDISSYKTFYGEHYQQCVVKLASAVNDPVCWKTLNIELLNRTKSDDVQVRLAVLNVIDKIYDSLGESYMVLIPETIPYXXXXXXXXXXXXXXKCRFVIKKIEQITGESIQKYF 3060
LV +LF L CL +P E+ KQL L+ L N+ Q+ D K L+ F +E ++ C+R +E PQT + L L+ A +FP +LH++M +F+FMG ++++D+ ++F VI KT+ ++P ++Q S + +++E+V+ I FV + PH PEHRR IL +L+ +G E L ++LL + + + + K+ +F + + Q+ ++ +++YL L +K T K + +F+ K+ R F + +SF+ +L S++ L +V S L E + Y + S++ + ++ F + LL+K +++ LLP T++ ++ GL+ ++ KA +LL L++ + + L P D+ ++ +++K + Q L+ +KL+ +P+ FV L L A + V +A+L E+ L+ +P L ++ +L + ++ E +SS + +++ + +LQK+ ++P F+SPY+ I +++ H+E + + + + K L +APR+L P +K+ + + N + + I + + M E+ ++ + + F ++ ++ + SEN LE TE C +A+ +++E + R ++ +LF+WA K + ++L FY L+ +A L+GLF LF L++ AD L +F P+ L LL +++C IF +DT F+++ER + + P+V Q+E L E+ ++ +H C+ + + A+ D WK LN ++L +T+ +VR A L + + + L E+Y+VL+PE+IP+L+E++EDE EVE +C+ I+++E + GE +Q YF
Sbjct: 1226 LVPTLFNLLSRCLEPLPQEQGNMEYTKQLILSCLLNICQKLSPDGGKIPKDILDEEKFNVELIVQCIRLSEMPQTHHHALLLLGTVAGIFPDKVLHNIMSIFTFMGANVMRLDDTYSFQVINKTVKMVIPALIQSDSGDSIE--VSRNVEEIVVKIISVFVDALPHVPEHRRLPILVQLVDTLGAEKFLWILLILLFEQYVTKTVLAAAYGE--------------KDAILEADTEFWFSVCCEFSVQHQIQSLMNILQYLLKLPEEKEETIPKAVSFNKSESQEEMLQVFNVETHTSKQLRHFKFLSVSFMSQLL---SSNNFLKKVVESGGPEILKGLEERLLETVLGYISAVAQSMER-NADKLTVKFWRALLSKAYDLLDKVNALLPTETFIPVIRGLVGNPLPSVRRKALDLLNNKLQQNISWKKTIVTRFLKLVP----DLLAIVQRKKKEGEEEQAINRQTALYTLKLLCKNFGAENPDPFVPVLNTAVKLIAPERKEEKNVLGSALLCIAEVTSTLEALAIPQLPSLMPSLLTTMKNTSELVSSE---VYLLSALAALQKVVETLPHFISPYLEGILSQVIHLEKITSEMGSASQANIRLT-SLKKTLATTLAPRVLLPAIKKTYKQI--EKNWKNHMGPFMSILQEHIGVMKKEELTS-HQSQLTAFFL----EALDFRAQHSENDLEEVGKTENCIIDCLVAMVVKLSEVTFRPLFFKLFDWA-KTEDAPKDRLLTFYNLADCIAEKLKGLFTLFAGHLVKPFADTLNQVNISKTDEAFFDSENDPEKCCL---LLQFILNCLYKIFLFDTQHFISKERAEALMMPLVDQLENRLGGEE--KFQERVTKHLIPCIAQFSVAMADDSLWKPLNYQILLKTRDSSPKVRFAALITVLALAEKLKENYIVLLPESIPFLAELMEDECEEVEHQCQKTIQQLETVLGEPLQSYF 2144 The following BLAST results are available for this feature:
BLAST of TCONS_00065998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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