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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065990 ID=TCONS_00065990|Name=TCONS_00065990|organism=Clytia hemisphaerica|type=transcript|length=2155bp ataaaaaaaaagaaaagaagaatttttgaTAAGAATCTGTTCTTCTTCTT GAAACACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTA TGATCGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCA AATACCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAG GAACCAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTC GCTTTTCTGGCAATACTTAGAAATTGTACTTCAATACGGATTCGTCACTA TGTTTGTCGCTGCTTTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAAC ATGGTGGAAATTCGTCTCGATGCTTCAAACTTCATTCACAATTTCCGCCG ACCCGTAGCAGAGCGAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTG CTACCTTAACCACCTTCTCAACAATCGTCAATGGATTTGTATTGGCTTTC ACATCAGAATTGATTCCTAAACTCGTCTACAGATATTACGCCTCAACCAC TGGTAGCTTAGAAGGATTCACTGAATGGAGTTTATCCAAATTCCCGATTG CCGAAATCGGGGCAAATGGACGACCCGATAATCCTCAATTAAATATTCCC GATTTCAATGCCACAGCTAATAAATACTGTCTTTACCCTGGTTACCATGA ATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACATCTG CTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACA TGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAACTTTGGAACTCAG AATCAAACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAG AAAGAACCGGTAAACGAAAACCACGCCCTGATGATGACCGcaatgacgtc acactttcAGGGGAAATCACTAACCGTGGACACGCAGACTCGTCACTGTC ACCTGATCATACTCATACAACATACATCTAAATACCATACCCTCAAACCA CATTCTAACTTTTTCCATACAAATATATGTAGAGTAGAAGCCAGAAAACC TTGGATATGTTTATAAGTCTCAAACCATGCATGTTTCTCTAACAATTCCA TTATTTTCTCACATTTTCTGCATGCTGCAAAATTGTTAGGACTGCATTTT GTTAGGTCTTGcacttgatatttttctttgctgAAGCACAGTGAAGAAAA CCAAAAGTTTGAACTCTTTATTTACgcacaattttatacacaatcacaaa ttcatgatattaatgatacctcggttttagccagtagtggctaAAATTTA AACTAGTCTAAAAATTggataaaatttgccactactggcaaaaacctggg tctttccgtagaaaacattacgtcatgaatatcatgaataaggagTCATT CAGCATTACTCAGACGTTAGTTCTAGATAAGTTCTAACTCTCTTTTTCAC TCACTTTTTCTCTATGCACCACTCTCTGCATTTTTCTTGCAAAGTATTTT TATAGGTATCTTTAATATTCTTAGGAAATGATCTTTAATTTATTCACTTT TTGTAGTATCGTACAcgtaatgttatttttttcgtttatttttatacttt ttcgtTCGTAGAtaatcttcaaaaatatttttttacactACTAACCACCA AAAAATACACTTATTATTCAGCTTAATGATTACTGgcaattttcttttgt attttttgtgtttCTTTAAAATGACACTTTTATAGTCTTGGGAATTAATG TTACATACttaatttatattttcttgggtgtattttcagttttttagcac ttcctttttgtttctttttgctGGCATACAGCCACGTTGTCCAAACGTTT GAACggtttatattttcatttgtttaccCTCTGTTATTCCCAAATAGCAT TAATTTATcttaaaacattatttttttatttcaatttttttgggtaAAAC TATAACTAAGtactaaatttctttttttttcaattattttttaatatggc aacttttggtttttctcttgtaaaaattatattggaaaaatatattttaa gaaaCTTGTATATGATATTTGTGTACTCTGTGTCTTCAATTATAGTTGAT CTACG Run BLAST on NCBI transcript from alignment at scaffold_448:641950..647987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065990 ID=TCONS_00065990|Name=TCONS_00065990|organism=Clytia hemisphaerica|type=transcript|length=6038bp|location=Sequence derived from alignment at scaffold_448:641950..647987- (Clytia hemisphaerica) ATAAAAAAAAAGAAAAGAAGAATTTTTGATAAGAATCTGTTCTTCTTCTT
GAAACACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTA
TGATCGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCA
AATACCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAG
GAACCAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTC
GCTTTTCTGGCAATACTTAGAAATTGGTAAGTATGCTATAAGACTGTTTT
TTGTGTTCGATGTTAAAGAGCTGATTATGTCCAGCTCAGAAACAAATATG
ATCACGCAACGATAACCGCACTGGAGTGATGCGAGATCGTCGAATCATGA
ATGTCTAAAATTTAAAATCTCTTTTTTGAGGTAATACTTTCGTTAATAAA
TTTTCAAGGTTGTTTTACAATCTTCACTTGATTGTACGAAATTCTTCATT
TTCATTTTCTCTCAGTACTTCAATACGGATTCGTCACTATGTTTGTCGCT
GCTTTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAACATGGTGGAAAT
TCGTCTCGATGCTTCAAACTTCATTCACAATTTCCGCCGACCCGTAGCAG
AGCGAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACC
ACCGTAAGTAGTCCTTTTAGTGTTCTGAATTAGTAAGTAAGTAAGTAATG
AATTTATTTGTCTTAATAAGCGAGACGAGCGACCACACTCATAGACATAA
AACTAAACTAAGGAGGTGGCCGCACGCTACTGTTACAAGAAAAAATAGTT
TCTAAGATCTTACTAGGATACATTGAAAATAATTTTTTTATATATTTCGA
TTGCATTAGTTGGTATTCTGTACTGCAACTTTCCATTATGAAAGCAATTG
CGGTAATCTGTAAAGGCAATCTTTTATGCAATCCTGATGTTAACGGCCAG
AATCGTAAGCTGGTTGGTTGCATCCACTAACGGATTCGTGCTCCTTATAG
CTATACTACTTATACTTAAAGGAAGAAATTTTTGCGGGAATTTAATTTGG
CGGATAGCCGAAAAAGTTTTTTCAGGAAATTTAATTTAGCGGTTTACTTG
GCGGGAATTTAATTTGGCAGATGAAGGACATTTTTGTCCAAAAAACGCCA
TTAAAAAAGGAAATACCTGTTTTAAAGCCTAAAGTAGCACACATTTTGGG
GAATAAATAGGGCAATTTAAATTTGGCGGGACTTAAATTGGCGGATTTTG
ACCAAATCCGCCAAATTTAAGTTCGCGCCAAAATTTCTTCTTATAAGGTA
TCTGCGGTTTTGTAGAGGTCTGAGATTCGGACTACAATAATCACGGAACT
TTTTTGAGCAAAACTTTCTGAGCAAAACTTTTTAAGCAAAACTTTTTAAG
CAAAACTTTTTAAGCAAAATTTTTAAGCAAAACTTTTTAAGCAAAACTTT
AAAAAACCTCAATATTTACCGTCTGCGGAGCCACCTGTGCCCCATGCGTT
GGTCTCGTGTTTGAGATAATAATAAGCTGTCTGACATCTCGCGATGCGTG
TGATCTTTCCTATAAATTTCTACTTTATTTGCTACACGGAAATCTAAAAT
CCGAATAATACGTTGATGGACTTTGAAGTTTTTGAGTTGTTCAGCTTTTC
AATTGTATGACTTCGATTGCCTTCCTCTCTTAGCCTTAGCCTTTGTTAAT
TCAGTTGGAATTTATACCAATAATATCTGATTCATCTTTCAGTTCTCAAC
AATCGTCAATGGATTTGTATTGGCTTTCACATCAGAATTGATTCCTAAAC
TCGTCTACAGATATTACGCCTCAACCACTGGTAGCTTAGAAGGATTCACT
GAATGGAGTTTATCCAAATTCCCGATTGCCGAAATCGGGGCAAATGGACG
ACCCGATAATCCTCAATTAAATATTCCCGATTTCAATGCCACAGCTAATA
AATACTGTCTGTAAGTATTATTTTATGAAAGTCGTTTTTGAATTGAACTC
TTTTTATTTCTCTTTCAATAAGTAAATATAGAGCTATTTATGGTTACACG
CTTTTTATTCATAAGAACATTAAAAAGATTCTTAACTTTTTTACTTCCGT
TGAGTCGAGCCTCAAACATTCTTATTTTAACCATTTTGTGAGTATTTTAA
GTGCGATTTTCTACGAAATCAAATATCTTAAGTCTGCAAAGCCTTAAAAT
GTTCTTAACTTATAATTTATTCCGGCCATCGAAGTTTATGTTTATTTAAG
CCCATTATAAATTAACACCTTTCTCTTTTCCCACAGTTACCCTGGTTACC
ATGAATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACA
TCTGCTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAAT
CACATGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAAGTAAGTATT
TGCACCTTTATTGAAACATTTCTAATCTTAAAATGATCCATTGAAGGTTT
GTTTTTATTATAATATTCTATTCCATCAATCGAAAATTTCCTTTGTTCTT
ATAAATAGCTATTGTATTCTAACAAAGGTTTCAGACAAAAGTTCCCTGAG
TCTAAAATGCTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAACG
ATATATCTGACATTAAATAAAAGTTNTTGACATTAAATAAAAGTTAGGAA
TTTACCGATAATTTCATGGCAAAAGCTCTATTATTTCAGGAGCTGTCGCC
ATTAATCTGACCTAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAAT
GTTGCATTAATGTAAAATGAGGGAAGATGATACCTTTTTCGTTGACTTGC
GTTATTGTGAAGCGAATATACACGAGCGAAGCATGTTTTCTATAGTGTGT
TTGTACCCTTAAATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTA
CTGAGAAAGTCTGTTCAATTCGTCAGATTTCACAAAACGTTTAAAATGAT
GTTTTTTCATTCAAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAA
TCAAACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGNA
TTTTATGAAAGTCGTTTTTGAATTGAACTCTTTTTATTTCTCTTTCAATA
AGTAAATATAGAGCTATTTATGGTTACACGCTTTTTATTCATAAGAACAT
TAAAAAGATTCTTAACTTTTTTACTTCCGTTGAGTCGAGCCTCAAACATT
CTTATTTTAACCATTTTGTGAGTATTTTAAGTGCGATTTTCTACGAAATC
AAATATCTTAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTATAATTTAT
TCCGGCCATCGAAGTTTATGTTTATTTAAGCCCATTATAAATTAACACCT
TTCTCTTTTCCCACAGTTACCCTGGTTACCATGAATCAAAGGCACCTTAC
AAACGTGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTTAT
CTTGGCCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTATC
TGGTACCTGACGTTCCCAAAAGTAAGTATTTGCACCTTTATTGAAACATT
TCTAATCTTAAAATGATCCATTGAAGGTTTGTTTTTATTATAATATTCTA
TTCCATCAATCGAAAATTTCCTTTGTTCTTATAAATAGCTATTGTATTCT
AACAAAGGTTTCAGACAAAAGTTCCCTGAGTCTAAAATGCTTATTTTATC
CTAAATATTCAATAAATTACGGTTTAAACGATATATCTGACATTAAATAA
AAGTTAGAAATTTACCGAAAATTTAATGGCAAAAGCTCTATTTCAGGAGC
TGTCGCCATTAATCTGACCTCCGAACAGAAATAGCTAGGGGGGCCTAGCA
CGAATAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAATGCTGCATT
AATGTGAAACGAGGGAAGATGATACCTTTTTCGTTGACTTGCGTTATTGT
GAAGCGAATATACACGAGCGAAGCATGTTTTCTATGGTGTGTTTGTACCC
TTAAATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTACTGAAAAA
GTCTGCTCAATTCGTCAGATTTCACAAAACGTTTAAAATGATGTTTTCTC
ATTCAAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAATCAAACGT
GAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGAAAGAACCGG
TAAACGAAAACCACGCCCTGATGATGACCGCAATGACGTCACACTTTCAG
GGGAAATCACTAACCGTGGACACGCAGACTCGTCACTGTAAGCTACGTAC
AATCCACGTTTTTATTTTAGTGAGGTCGACCATACAGCTGGTCACTTTTG
ATTGGCGTCTATAGAAACAATAGAACGATGCAATCTATTCAGATCTTGGT
ACAAAACTGCAATGAAAACTCGGCATCAAAACTCTTATTAAAAATGATAA
AAATGATACAAAAATTCATAAAAAAAGTATTTTTAGGTGAAACAAAACAT
AGGGAAAAGACAATGCTACTTAATTTGAAGGCGGACTACATTTATTATTT
CTATTTGGGAACTAGCGTAATTTTTTTGAGTTTTTCATAGAGCCAAATGT
TGCTTTGTTTATTCTTTTTTCTTTGTTTGTCTTTGCATTTCTTGCTAGCT
TAAAGTTTCTTTGTTATCCCAGTTTTAGCCTAGTCTGCTAATTCTAAACC
TAAAATTGAGCTTTCTGATTGGATGAGAGTTGGTAGATAACGAACGTGAT
TGGCTAATACATTTCTTATTTCGTTTCCAGGTCACCTGATCATACTCATA
CAACATACATCTAAATACCATACCCTCAAACCACATTCTAACTTTTTCCA
TACAAATATATGTAGAGTAGAAGCCAGAAAACCTTGGATATGTTTATAAG
TCTCAAACCATGCATGTTTCTCTAACAATTCCATTATTTTCTCACATTTT
CTGCATGCTGCAAAATTGTTAGGACTGCATTTTGTTAGGTCTTGCACTTG
ATATTTTTCTTTGCTGAAGCACAGTGAAGAAAACCAAAAGTTTGAACTCT
TTATTTACGCACAATTTTATACACAATCACAAATTCATGATATTAATGAT
ACCTCGGTTTTAGCCAGTAGTGGCTAAAATTTAAACTAGTCTAAAAATTG
GATAAAATTTGCCACTACTGGCAAAAACCTGGGTCTTTCCGTAGAAAACA
TTACGTCATGAATATCATGAATAAGGAGTCATTCAGCATTACTCAGACGT
TAGTTCTAGATAAGTTCTAACTCTCTTTTTCACTCACTTTTTCTCTATGC
ACCACTCTCTGCATTTTTCTTGCAAAGTATTTTTATAGGTATCTTTAATA
TTCTTAGGAAATGATCTTTAATTTATTCACTTTTTGTAGTATCGTACACG
TAATGTTATTTTTTTCGTTTATTTTTATACTTTTTCGTTCGTAGATAATC
TTCAAAAATATTTTTTTACACTACTAACCACCAAAAAATACACTTATTAT
TCAGCTTAATGATTACTGGCAATTTTCTTTTGTATTTTTTGTGTTTCTTT
AAAATGACACTTTTATAGTCTTGGGAATTAATGTTACATACTTAATTTAT
ATTTTCTTGGGTGTATTTTCAGTTTTTTAGCACTTCCTTTTTGTTTCTTT
TTGCTGGCATACAGCCACGTTGTCCAAACGTTTGAACGGTTTATATTTTC
ATTTGTTTACCCTCTGTTATTCCCAAATAGCATTAATTTATCTTAAAACA
TTATTTTTTTATTTCAATTTTTTTGGGTAAAACTATAACTAAGTACTAAA
TTTCTTTTTTTTTCAATTATTTTTTAATATGGCAACTTTTGGTTTTTCTC
TTGTAAAAATTATATTGGAAAAATATATTTTAAGAAACTTGTATATGATA
TTTGTGTACTCTGTGTCTTCAATTATAGTTGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065990-exon-scaffold_448-1575043694:647712..647987 | TCONS_00065990-exon-scaffold_448-1575043694:647712..647987 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1575043694:647285..647472 | TCONS_00065990-exon-scaffold_448-1575043694:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1575043694:645978..646195 | TCONS_00065990-exon-scaffold_448-1575043694:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1575043694:645497..645651 | TCONS_00065990-exon-scaffold_448-1575043694:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1575043694:643601..643760 | TCONS_00065990-exon-scaffold_448-1575043694:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1575043694:641950..643107 | TCONS_00065990-exon-scaffold_448-1575043694:641950..643107 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:647712..647987 | TCONS_00065990-exon-scaffold_448-1510915933:647712..647987 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:647285..647472 | TCONS_00065990-exon-scaffold_448-1510915933:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:645978..646195 | TCONS_00065990-exon-scaffold_448-1510915933:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:645497..645651 | TCONS_00065990-exon-scaffold_448-1510915933:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:643601..643760 | TCONS_00065990-exon-scaffold_448-1510915933:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1510915933:641950..643107 | TCONS_00065990-exon-scaffold_448-1510915933:641950..643107 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:647712..647987 | TCONS_00065990-exon-scaffold_448-1491911889:647712..647987 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:647285..647472 | TCONS_00065990-exon-scaffold_448-1491911889:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:645978..646195 | TCONS_00065990-exon-scaffold_448-1491911889:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:645497..645651 | TCONS_00065990-exon-scaffold_448-1491911889:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:643601..643760 | TCONS_00065990-exon-scaffold_448-1491911889:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065990-exon-scaffold_448-1491911889:641950..643107 | TCONS_00065990-exon-scaffold_448-1491911889:641950..643107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_448 | supercontig | scaffold_448:641950..647987 - |
Blast
BLAST of TCONS_00065990 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.276e-47 Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 3
Query: 204 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 905
P+W DY + + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA F+ +RRP+A RA+DIG WY IL + S I N FV+A TS+ IP+LVY Y Y G E G+ SLS F I++ P++ + +F+ T KYC Y Y + S PY L +W + +ARLAFI+ F+ LV I +I YL+PD+PK L R++RE ++ AE+E+ KER
Sbjct: 693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940
The following BLAST results are available for this feature:
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