TCONS_00065990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065990
Unique NameTCONS_00065990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065990 ID=TCONS_00065990|Name=TCONS_00065990|organism=Clytia hemisphaerica|type=transcript|length=2155bp
ataaaaaaaaagaaaagaagaatttttgaTAAGAATCTGTTCTTCTTCTT
GAAACACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTA
TGATCGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCA
AATACCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAG
GAACCAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTC
GCTTTTCTGGCAATACTTAGAAATTGTACTTCAATACGGATTCGTCACTA
TGTTTGTCGCTGCTTTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAAC
ATGGTGGAAATTCGTCTCGATGCTTCAAACTTCATTCACAATTTCCGCCG
ACCCGTAGCAGAGCGAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTG
CTACCTTAACCACCTTCTCAACAATCGTCAATGGATTTGTATTGGCTTTC
ACATCAGAATTGATTCCTAAACTCGTCTACAGATATTACGCCTCAACCAC
TGGTAGCTTAGAAGGATTCACTGAATGGAGTTTATCCAAATTCCCGATTG
CCGAAATCGGGGCAAATGGACGACCCGATAATCCTCAATTAAATATTCCC
GATTTCAATGCCACAGCTAATAAATACTGTCTTTACCCTGGTTACCATGA
ATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACATCTG
CTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACA
TGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAACTTTGGAACTCAG
AATCAAACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAG
AAAGAACCGGTAAACGAAAACCACGCCCTGATGATGACCGcaatgacgtc
acactttcAGGGGAAATCACTAACCGTGGACACGCAGACTCGTCACTGTC
ACCTGATCATACTCATACAACATACATCTAAATACCATACCCTCAAACCA
CATTCTAACTTTTTCCATACAAATATATGTAGAGTAGAAGCCAGAAAACC
TTGGATATGTTTATAAGTCTCAAACCATGCATGTTTCTCTAACAATTCCA
TTATTTTCTCACATTTTCTGCATGCTGCAAAATTGTTAGGACTGCATTTT
GTTAGGTCTTGcacttgatatttttctttgctgAAGCACAGTGAAGAAAA
CCAAAAGTTTGAACTCTTTATTTACgcacaattttatacacaatcacaaa
ttcatgatattaatgatacctcggttttagccagtagtggctaAAATTTA
AACTAGTCTAAAAATTggataaaatttgccactactggcaaaaacctggg
tctttccgtagaaaacattacgtcatgaatatcatgaataaggagTCATT
CAGCATTACTCAGACGTTAGTTCTAGATAAGTTCTAACTCTCTTTTTCAC
TCACTTTTTCTCTATGCACCACTCTCTGCATTTTTCTTGCAAAGTATTTT
TATAGGTATCTTTAATATTCTTAGGAAATGATCTTTAATTTATTCACTTT
TTGTAGTATCGTACAcgtaatgttatttttttcgtttatttttatacttt
ttcgtTCGTAGAtaatcttcaaaaatatttttttacactACTAACCACCA
AAAAATACACTTATTATTCAGCTTAATGATTACTGgcaattttcttttgt
attttttgtgtttCTTTAAAATGACACTTTTATAGTCTTGGGAATTAATG
TTACATACttaatttatattttcttgggtgtattttcagttttttagcac
ttcctttttgtttctttttgctGGCATACAGCCACGTTGTCCAAACGTTT
GAACggtttatattttcatttgtttaccCTCTGTTATTCCCAAATAGCAT
TAATTTATcttaaaacattatttttttatttcaatttttttgggtaAAAC
TATAACTAAGtactaaatttctttttttttcaattattttttaatatggc
aacttttggtttttctcttgtaaaaattatattggaaaaatatattttaa
gaaaCTTGTATATGATATTTGTGTACTCTGTGTCTTCAATTATAGTTGAT
CTACG
Run BLAST on NCBI

transcript from alignment at scaffold_448:641950..647987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065990 ID=TCONS_00065990|Name=TCONS_00065990|organism=Clytia hemisphaerica|type=transcript|length=6038bp|location=Sequence derived from alignment at scaffold_448:641950..647987- (Clytia hemisphaerica)
ATAAAAAAAAAGAAAAGAAGAATTTTTGATAAGAATCTGTTCTTCTTCTT GAAACACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTA TGATCGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCA AATACCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAG GAACCAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTC GCTTTTCTGGCAATACTTAGAAATTGGTAAGTATGCTATAAGACTGTTTT TTGTGTTCGATGTTAAAGAGCTGATTATGTCCAGCTCAGAAACAAATATG ATCACGCAACGATAACCGCACTGGAGTGATGCGAGATCGTCGAATCATGA ATGTCTAAAATTTAAAATCTCTTTTTTGAGGTAATACTTTCGTTAATAAA TTTTCAAGGTTGTTTTACAATCTTCACTTGATTGTACGAAATTCTTCATT TTCATTTTCTCTCAGTACTTCAATACGGATTCGTCACTATGTTTGTCGCT GCTTTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAACATGGTGGAAAT TCGTCTCGATGCTTCAAACTTCATTCACAATTTCCGCCGACCCGTAGCAG AGCGAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACC ACCGTAAGTAGTCCTTTTAGTGTTCTGAATTAGTAAGTAAGTAAGTAATG AATTTATTTGTCTTAATAAGCGAGACGAGCGACCACACTCATAGACATAA AACTAAACTAAGGAGGTGGCCGCACGCTACTGTTACAAGAAAAAATAGTT TCTAAGATCTTACTAGGATACATTGAAAATAATTTTTTTATATATTTCGA TTGCATTAGTTGGTATTCTGTACTGCAACTTTCCATTATGAAAGCAATTG CGGTAATCTGTAAAGGCAATCTTTTATGCAATCCTGATGTTAACGGCCAG AATCGTAAGCTGGTTGGTTGCATCCACTAACGGATTCGTGCTCCTTATAG CTATACTACTTATACTTAAAGGAAGAAATTTTTGCGGGAATTTAATTTGG CGGATAGCCGAAAAAGTTTTTTCAGGAAATTTAATTTAGCGGTTTACTTG GCGGGAATTTAATTTGGCAGATGAAGGACATTTTTGTCCAAAAAACGCCA TTAAAAAAGGAAATACCTGTTTTAAAGCCTAAAGTAGCACACATTTTGGG GAATAAATAGGGCAATTTAAATTTGGCGGGACTTAAATTGGCGGATTTTG ACCAAATCCGCCAAATTTAAGTTCGCGCCAAAATTTCTTCTTATAAGGTA TCTGCGGTTTTGTAGAGGTCTGAGATTCGGACTACAATAATCACGGAACT TTTTTGAGCAAAACTTTCTGAGCAAAACTTTTTAAGCAAAACTTTTTAAG CAAAACTTTTTAAGCAAAATTTTTAAGCAAAACTTTTTAAGCAAAACTTT AAAAAACCTCAATATTTACCGTCTGCGGAGCCACCTGTGCCCCATGCGTT GGTCTCGTGTTTGAGATAATAATAAGCTGTCTGACATCTCGCGATGCGTG TGATCTTTCCTATAAATTTCTACTTTATTTGCTACACGGAAATCTAAAAT CCGAATAATACGTTGATGGACTTTGAAGTTTTTGAGTTGTTCAGCTTTTC AATTGTATGACTTCGATTGCCTTCCTCTCTTAGCCTTAGCCTTTGTTAAT TCAGTTGGAATTTATACCAATAATATCTGATTCATCTTTCAGTTCTCAAC AATCGTCAATGGATTTGTATTGGCTTTCACATCAGAATTGATTCCTAAAC TCGTCTACAGATATTACGCCTCAACCACTGGTAGCTTAGAAGGATTCACT GAATGGAGTTTATCCAAATTCCCGATTGCCGAAATCGGGGCAAATGGACG ACCCGATAATCCTCAATTAAATATTCCCGATTTCAATGCCACAGCTAATA AATACTGTCTGTAAGTATTATTTTATGAAAGTCGTTTTTGAATTGAACTC TTTTTATTTCTCTTTCAATAAGTAAATATAGAGCTATTTATGGTTACACG CTTTTTATTCATAAGAACATTAAAAAGATTCTTAACTTTTTTACTTCCGT TGAGTCGAGCCTCAAACATTCTTATTTTAACCATTTTGTGAGTATTTTAA GTGCGATTTTCTACGAAATCAAATATCTTAAGTCTGCAAAGCCTTAAAAT GTTCTTAACTTATAATTTATTCCGGCCATCGAAGTTTATGTTTATTTAAG CCCATTATAAATTAACACCTTTCTCTTTTCCCACAGTTACCCTGGTTACC ATGAATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACA TCTGCTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAAT CACATGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAAGTAAGTATT TGCACCTTTATTGAAACATTTCTAATCTTAAAATGATCCATTGAAGGTTT GTTTTTATTATAATATTCTATTCCATCAATCGAAAATTTCCTTTGTTCTT ATAAATAGCTATTGTATTCTAACAAAGGTTTCAGACAAAAGTTCCCTGAG TCTAAAATGCTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAACG ATATATCTGACATTAAATAAAAGTTNTTGACATTAAATAAAAGTTAGGAA TTTACCGATAATTTCATGGCAAAAGCTCTATTATTTCAGGAGCTGTCGCC ATTAATCTGACCTAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAAT GTTGCATTAATGTAAAATGAGGGAAGATGATACCTTTTTCGTTGACTTGC GTTATTGTGAAGCGAATATACACGAGCGAAGCATGTTTTCTATAGTGTGT TTGTACCCTTAAATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTA CTGAGAAAGTCTGTTCAATTCGTCAGATTTCACAAAACGTTTAAAATGAT GTTTTTTCATTCAAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAA TCAAACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGNA TTTTATGAAAGTCGTTTTTGAATTGAACTCTTTTTATTTCTCTTTCAATA AGTAAATATAGAGCTATTTATGGTTACACGCTTTTTATTCATAAGAACAT TAAAAAGATTCTTAACTTTTTTACTTCCGTTGAGTCGAGCCTCAAACATT CTTATTTTAACCATTTTGTGAGTATTTTAAGTGCGATTTTCTACGAAATC AAATATCTTAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTATAATTTAT TCCGGCCATCGAAGTTTATGTTTATTTAAGCCCATTATAAATTAACACCT TTCTCTTTTCCCACAGTTACCCTGGTTACCATGAATCAAAGGCACCTTAC AAACGTGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTTAT CTTGGCCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTATC TGGTACCTGACGTTCCCAAAAGTAAGTATTTGCACCTTTATTGAAACATT TCTAATCTTAAAATGATCCATTGAAGGTTTGTTTTTATTATAATATTCTA TTCCATCAATCGAAAATTTCCTTTGTTCTTATAAATAGCTATTGTATTCT AACAAAGGTTTCAGACAAAAGTTCCCTGAGTCTAAAATGCTTATTTTATC CTAAATATTCAATAAATTACGGTTTAAACGATATATCTGACATTAAATAA AAGTTAGAAATTTACCGAAAATTTAATGGCAAAAGCTCTATTTCAGGAGC TGTCGCCATTAATCTGACCTCCGAACAGAAATAGCTAGGGGGGCCTAGCA CGAATAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAATGCTGCATT AATGTGAAACGAGGGAAGATGATACCTTTTTCGTTGACTTGCGTTATTGT GAAGCGAATATACACGAGCGAAGCATGTTTTCTATGGTGTGTTTGTACCC TTAAATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTACTGAAAAA GTCTGCTCAATTCGTCAGATTTCACAAAACGTTTAAAATGATGTTTTCTC ATTCAAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAATCAAACGT GAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGAAAGAACCGG TAAACGAAAACCACGCCCTGATGATGACCGCAATGACGTCACACTTTCAG GGGAAATCACTAACCGTGGACACGCAGACTCGTCACTGTAAGCTACGTAC AATCCACGTTTTTATTTTAGTGAGGTCGACCATACAGCTGGTCACTTTTG ATTGGCGTCTATAGAAACAATAGAACGATGCAATCTATTCAGATCTTGGT ACAAAACTGCAATGAAAACTCGGCATCAAAACTCTTATTAAAAATGATAA AAATGATACAAAAATTCATAAAAAAAGTATTTTTAGGTGAAACAAAACAT AGGGAAAAGACAATGCTACTTAATTTGAAGGCGGACTACATTTATTATTT CTATTTGGGAACTAGCGTAATTTTTTTGAGTTTTTCATAGAGCCAAATGT TGCTTTGTTTATTCTTTTTTCTTTGTTTGTCTTTGCATTTCTTGCTAGCT TAAAGTTTCTTTGTTATCCCAGTTTTAGCCTAGTCTGCTAATTCTAAACC TAAAATTGAGCTTTCTGATTGGATGAGAGTTGGTAGATAACGAACGTGAT TGGCTAATACATTTCTTATTTCGTTTCCAGGTCACCTGATCATACTCATA CAACATACATCTAAATACCATACCCTCAAACCACATTCTAACTTTTTCCA TACAAATATATGTAGAGTAGAAGCCAGAAAACCTTGGATATGTTTATAAG TCTCAAACCATGCATGTTTCTCTAACAATTCCATTATTTTCTCACATTTT CTGCATGCTGCAAAATTGTTAGGACTGCATTTTGTTAGGTCTTGCACTTG ATATTTTTCTTTGCTGAAGCACAGTGAAGAAAACCAAAAGTTTGAACTCT TTATTTACGCACAATTTTATACACAATCACAAATTCATGATATTAATGAT ACCTCGGTTTTAGCCAGTAGTGGCTAAAATTTAAACTAGTCTAAAAATTG GATAAAATTTGCCACTACTGGCAAAAACCTGGGTCTTTCCGTAGAAAACA TTACGTCATGAATATCATGAATAAGGAGTCATTCAGCATTACTCAGACGT TAGTTCTAGATAAGTTCTAACTCTCTTTTTCACTCACTTTTTCTCTATGC ACCACTCTCTGCATTTTTCTTGCAAAGTATTTTTATAGGTATCTTTAATA TTCTTAGGAAATGATCTTTAATTTATTCACTTTTTGTAGTATCGTACACG TAATGTTATTTTTTTCGTTTATTTTTATACTTTTTCGTTCGTAGATAATC TTCAAAAATATTTTTTTACACTACTAACCACCAAAAAATACACTTATTAT TCAGCTTAATGATTACTGGCAATTTTCTTTTGTATTTTTTGTGTTTCTTT AAAATGACACTTTTATAGTCTTGGGAATTAATGTTACATACTTAATTTAT ATTTTCTTGGGTGTATTTTCAGTTTTTTAGCACTTCCTTTTTGTTTCTTT TTGCTGGCATACAGCCACGTTGTCCAAACGTTTGAACGGTTTATATTTTC ATTTGTTTACCCTCTGTTATTCCCAAATAGCATTAATTTATCTTAAAACA TTATTTTTTTATTTCAATTTTTTTGGGTAAAACTATAACTAAGTACTAAA TTTCTTTTTTTTTCAATTATTTTTTAATATGGCAACTTTTGGTTTTTCTC TTGTAAAAATTATATTGGAAAAATATATTTTAAGAAACTTGTATATGATA TTTGTGTACTCTGTGTCTTCAATTATAGTTGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041327XLOC_041327Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065990-exon-scaffold_448-1575043694:647712..647987TCONS_00065990-exon-scaffold_448-1575043694:647712..647987Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1575043694:647285..647472TCONS_00065990-exon-scaffold_448-1575043694:647285..647472Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1575043694:645978..646195TCONS_00065990-exon-scaffold_448-1575043694:645978..646195Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1575043694:645497..645651TCONS_00065990-exon-scaffold_448-1575043694:645497..645651Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1575043694:643601..643760TCONS_00065990-exon-scaffold_448-1575043694:643601..643760Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1575043694:641950..643107TCONS_00065990-exon-scaffold_448-1575043694:641950..643107Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:647712..647987TCONS_00065990-exon-scaffold_448-1510915933:647712..647987Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:647285..647472TCONS_00065990-exon-scaffold_448-1510915933:647285..647472Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:645978..646195TCONS_00065990-exon-scaffold_448-1510915933:645978..646195Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:645497..645651TCONS_00065990-exon-scaffold_448-1510915933:645497..645651Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:643601..643760TCONS_00065990-exon-scaffold_448-1510915933:643601..643760Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1510915933:641950..643107TCONS_00065990-exon-scaffold_448-1510915933:641950..643107Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:647712..647987TCONS_00065990-exon-scaffold_448-1491911889:647712..647987Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:647285..647472TCONS_00065990-exon-scaffold_448-1491911889:647285..647472Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:645978..646195TCONS_00065990-exon-scaffold_448-1491911889:645978..646195Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:645497..645651TCONS_00065990-exon-scaffold_448-1491911889:645497..645651Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:643601..643760TCONS_00065990-exon-scaffold_448-1491911889:643601..643760Clytia hemisphaericaexon
TCONS_00065990-exon-scaffold_448-1491911889:641950..643107TCONS_00065990-exon-scaffold_448-1491911889:641950..643107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:641950..647987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 56.3562 51.6894 23.8818 26.1015 14.4988 16.5221 11.8114 9.43871 5.38905 5.7467 3.07758e-08 0 0 0 13.1847 29.9831 0 0 0 0 3.79794e-06 1.5273 10.9109 5.28177 0 0
Blast
BLAST of TCONS_00065990 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.276e-47
Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 3
Query:  204 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 905
            P+W  DY  +    + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA  F+  +RRP+A RA+DIG WY IL  +   S I N FV+A TS+ IP+LVY Y Y    G  E       G+   SLS F I++      P++   +  +F+ T  KYC Y  Y +   S  PY   L +W + +ARLAFI+ F+ LV  I  +I YL+PD+PK L  R++RE ++       AE+E+  KER
Sbjct:  693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940          
The following BLAST results are available for this feature:
BLAST of TCONS_00065990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANO41.276e-4744.22Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1[more]
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