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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065986 ID=TCONS_00065986|Name=TCONS_00065986|organism=Clytia hemisphaerica|type=transcript|length=2091bp CTCGTCCTTAACAAACATCTCACCCATACAGCTTTATGATCGCATCTTAA TCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCAAATACCGCGATTAT AAAGGCAAAAAACAACATTTGTACGAATCTAGCGAGGAACCAAGATGGGT TACTGATTATGAAGGAGAAATGCAAACAAAATTCTCGCTTTTCTGGCAAT ACTTAGAAATTGTACTTCAATACGGATTCGTCACTATGTTTGTCGCTGCT TTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAACATGGTGGAAATTCG TCTCGATGCTTCAAACTTCATTCACAATTTCCGCCGACCCGTAGCAGAGC GAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACCACC TTCTCAACAATCGTCAATGGATTTGTATTGGCTTTCACATCAGAATTGAT TCCTAAACTCGTCTACAGATATTACGCCTCAACCACTGGTAGCTTAGAAG GATTCACTGAATGGAGTTTATCCAAATTCCCGATTGCCGAAATCGGGGCA AATGGACGACCCGATAATCCTCAATTAAATATTCCCGATTTCAATGCCAC AGCTAATAAATACTGTCTTTACCCTGGTTACCATGAATCAAAGGCACCTT ACAAACGTGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTT ATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTA TCTGGTACCTGACGTTCCCAAAACTTTGGAACTCAGAATCAAACGTGAGA ACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGAAAGAACCGGTAAA CGAAAACCACGCCCTGATGATGACCGcaatgacgtcacactttcAGGGGA AATCACTAACCGTGGACACGCAGACTCGTCACTGTCACCTGATCATACTC ATACAACATACATCTAAATACCATACCCTCAAACCACATTCTAACTTTTT CCATACAAATATATGTAGAGTAGAAGCCAGAAAACCTTGGATATGTTTAT AAGTCTCAAACCATGCATGTTTCTCTAACAATTCCATTATTTTCTCACAT TTTCTGCATGCTGCAAAATTGTTAGGACTGCATTTTGTTAGGTCTTGcac ttgatatttttctttgctgAAGCACAGTGAAGAAAACCAAAAGTTTGAAC TCTTTATTTACgcacaattttatacacaatcacaaattcatgatattaat gatacctcggttttagccagtagtggctaAAATTTAAACTAGTCTAAAAA TTggataaaatttgccactactggcaaaaacctgggtctttccgtagaaa acattacgtcatgaatatcatgaataaggagTCATTCAGCATTACTCAGA CGTTAGTTCTAGATAAGTTCTAACTCTCTTTTTCACTCACTTTTTCTCTA TGCACCACTCTCTGCATTTTTCTTGCAAAGTATTTTTATAGGTATCTTTA ATATTCTTAGGAAATGATCTTTAATTTATTCACTTTTTGTAGTATCGTAC AcgtaatgttatttttttcgtttatttttatactttttcgtTCGTAGAta atcttcaaaaatatttttttacactACTAACCACCAAAAAATACACTTAT TATTCAGCTTAATGATTACTGgcaattttcttttgtattttttgtgtttC TTTAAAATGACACTTTTATAGTCTTGGGAATTAATGTTACATACttaatt tatattttcttgggtgtattttcagttttttagcacttcctttttgtttc tttttgctGGCATACAGCCACGTTGTCCAAACGTTTGAACggtttatatt ttcatttgtttaccCTCTGTTATTCCCAAATAGCATTAATTTATcttaaa acattatttttttatttcaatttttttgggtaAAACTATAACTAAGtact aaatttctttttttttcaattattttttaatatggcaacttttggttttt ctcttgtaaaaattatattggaaaaatatattttaagaaaCTTGTATATG ATATTTGTGTACTCTGTGTCTTCAATTATAGTTGATCTACG Run BLAST on NCBI transcript from alignment at scaffold_448:641950..647923- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065986 ID=TCONS_00065986|Name=TCONS_00065986|organism=Clytia hemisphaerica|type=transcript|length=5974bp|location=Sequence derived from alignment at scaffold_448:641950..647923- (Clytia hemisphaerica) CTCGTCCTTAACAAACATCTCACCCATACAGCTTTATGATCGCATCTTAA
TCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCAAATACCGCGATTAT
AAAGGCAAAAAACAACATTTGTACGAATCTAGCGAGGAACCAAGATGGGT
TACTGATTATGAAGGAGAAATGCAAACAAAATTCTCGCTTTTCTGGCAAT
ACTTAGAAATTGGTAAGTATGCTATAAGACTGTTTTTTGTGTTCGATGTT
AAAGAGCTGATTATGTCCAGCTCAGAAACAAATATGATCACGCAACGATA
ACCGCACTGGAGTGATGCGAGATCGTCGAATCATGAATGTCTAAAATTTA
AAATCTCTTTTTTGAGGTAATACTTTCGTTAATAAATTTTCAAGGTTGTT
TTACAATCTTCACTTGATTGTACGAAATTCTTCATTTTCATTTTCTCTCA
GTACTTCAATACGGATTCGTCACTATGTTTGTCGCTGCTTTCCCATTGGC
TCCTTTGTTTGCCTTGATTAACAACATGGTGGAAATTCGTCTCGATGCTT
CAAACTTCATTCACAATTTCCGCCGACCCGTAGCAGAGCGAGCGGAAGAT
ATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACCACCGTAAGTAGTCC
TTTTAGTGTTCTGAATTAGTAAGTAAGTAAGTAATGAATTTATTTGTCTT
AATAAGCGAGACGAGCGACCACACTCATAGACATAAAACTAAACTAAGGA
GGTGGCCGCACGCTACTGTTACAAGAAAAAATAGTTTCTAAGATCTTACT
AGGATACATTGAAAATAATTTTTTTATATATTTCGATTGCATTAGTTGGT
ATTCTGTACTGCAACTTTCCATTATGAAAGCAATTGCGGTAATCTGTAAA
GGCAATCTTTTATGCAATCCTGATGTTAACGGCCAGAATCGTAAGCTGGT
TGGTTGCATCCACTAACGGATTCGTGCTCCTTATAGCTATACTACTTATA
CTTAAAGGAAGAAATTTTTGCGGGAATTTAATTTGGCGGATAGCCGAAAA
AGTTTTTTCAGGAAATTTAATTTAGCGGTTTACTTGGCGGGAATTTAATT
TGGCAGATGAAGGACATTTTTGTCCAAAAAACGCCATTAAAAAAGGAAAT
ACCTGTTTTAAAGCCTAAAGTAGCACACATTTTGGGGAATAAATAGGGCA
ATTTAAATTTGGCGGGACTTAAATTGGCGGATTTTGACCAAATCCGCCAA
ATTTAAGTTCGCGCCAAAATTTCTTCTTATAAGGTATCTGCGGTTTTGTA
GAGGTCTGAGATTCGGACTACAATAATCACGGAACTTTTTTGAGCAAAAC
TTTCTGAGCAAAACTTTTTAAGCAAAACTTTTTAAGCAAAACTTTTTAAG
CAAAATTTTTAAGCAAAACTTTTTAAGCAAAACTTTAAAAAACCTCAATA
TTTACCGTCTGCGGAGCCACCTGTGCCCCATGCGTTGGTCTCGTGTTTGA
GATAATAATAAGCTGTCTGACATCTCGCGATGCGTGTGATCTTTCCTATA
AATTTCTACTTTATTTGCTACACGGAAATCTAAAATCCGAATAATACGTT
GATGGACTTTGAAGTTTTTGAGTTGTTCAGCTTTTCAATTGTATGACTTC
GATTGCCTTCCTCTCTTAGCCTTAGCCTTTGTTAATTCAGTTGGAATTTA
TACCAATAATATCTGATTCATCTTTCAGTTCTCAACAATCGTCAATGGAT
TTGTATTGGCTTTCACATCAGAATTGATTCCTAAACTCGTCTACAGATAT
TACGCCTCAACCACTGGTAGCTTAGAAGGATTCACTGAATGGAGTTTATC
CAAATTCCCGATTGCCGAAATCGGGGCAAATGGACGACCCGATAATCCTC
AATTAAATATTCCCGATTTCAATGCCACAGCTAATAAATACTGTCTGTAA
GTATTATTTTATGAAAGTCGTTTTTGAATTGAACTCTTTTTATTTCTCTT
TCAATAAGTAAATATAGAGCTATTTATGGTTACACGCTTTTTATTCATAA
GAACATTAAAAAGATTCTTAACTTTTTTACTTCCGTTGAGTCGAGCCTCA
AACATTCTTATTTTAACCATTTTGTGAGTATTTTAAGTGCGATTTTCTAC
GAAATCAAATATCTTAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTATA
ATTTATTCCGGCCATCGAAGTTTATGTTTATTTAAGCCCATTATAAATTA
ACACCTTTCTCTTTTCCCACAGTTACCCTGGTTACCATGAATCAAAGGCA
CCTTACAAACGTGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGC
TTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCG
GCTATCTGGTACCTGACGTTCCCAAAAGTAAGTATTTGCACCTTTATTGA
AACATTTCTAATCTTAAAATGATCCATTGAAGGTTTGTTTTTATTATAAT
ATTCTATTCCATCAATCGAAAATTTCCTTTGTTCTTATAAATAGCTATTG
TATTCTAACAAAGGTTTCAGACAAAAGTTCCCTGAGTCTAAAATGCTTAT
TTTATCCTAAATATTCAATAAATTACGGTTTAAACGATATATCTGACATT
AAATAAAAGTTNTTGACATTAAATAAAAGTTAGGAATTTACCGATAATTT
CATGGCAAAAGCTCTATTATTTCAGGAGCTGTCGCCATTAATCTGACCTA
GGGTTAAAAGCAACGAAGTTAAATATTTATTGAAATGTTGCATTAATGTA
AAATGAGGGAAGATGATACCTTTTTCGTTGACTTGCGTTATTGTGAAGCG
AATATACACGAGCGAAGCATGTTTTCTATAGTGTGTTTGTACCCTTAAAT
CAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTACTGAGAAAGTCTGT
TCAATTCGTCAGATTTCACAAAACGTTTAAAATGATGTTTTTTCATTCAA
ATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAATCAAACGTGAGAAC
TTTATCGCTGCCGAGATGGAGAAAAACCACAAAGNATTTTATGAAAGTCG
TTTTTGAATTGAACTCTTTTTATTTCTCTTTCAATAAGTAAATATAGAGC
TATTTATGGTTACACGCTTTTTATTCATAAGAACATTAAAAAGATTCTTA
ACTTTTTTACTTCCGTTGAGTCGAGCCTCAAACATTCTTATTTTAACCAT
TTTGTGAGTATTTTAAGTGCGATTTTCTACGAAATCAAATATCTTAAGTC
TGCAAAGCCTTAAAATGTTCTTAACTTATAATTTATTCCGGCCATCGAAG
TTTATGTTTATTTAAGCCCATTATAAATTAACACCTTTCTCTTTTCCCAC
AGTTACCCTGGTTACCATGAATCAAAGGCACCTTACAAACGTGATCTTGA
TTACTGGGTTATCACATCTGCTAGATTAGCTTTTATCTTGGCCTTCCAAG
CTCTTGTAATCACAATCACATGGGTCATCGGCTATCTGGTACCTGACGTT
CCCAAAAGTAAGTATTTGCACCTTTATTGAAACATTTCTAATCTTAAAAT
GATCCATTGAAGGTTTGTTTTTATTATAATATTCTATTCCATCAATCGAA
AATTTCCTTTGTTCTTATAAATAGCTATTGTATTCTAACAAAGGTTTCAG
ACAAAAGTTCCCTGAGTCTAAAATGCTTATTTTATCCTAAATATTCAATA
AATTACGGTTTAAACGATATATCTGACATTAAATAAAAGTTAGAAATTTA
CCGAAAATTTAATGGCAAAAGCTCTATTTCAGGAGCTGTCGCCATTAATC
TGACCTCCGAACAGAAATAGCTAGGGGGGCCTAGCACGAATAGGGTTAAA
AGCAACGAAGTTAAATATTTATTGAAATGCTGCATTAATGTGAAACGAGG
GAAGATGATACCTTTTTCGTTGACTTGCGTTATTGTGAAGCGAATATACA
CGAGCGAAGCATGTTTTCTATGGTGTGTTTGTACCCTTAAATCAGCAGAG
CAAGTAAACTTCATGTGTTTTTACGGTACTGAAAAAGTCTGCTCAATTCG
TCAGATTTCACAAAACGTTTAAAATGATGTTTTCTCATTCAAATAAATTT
CTTATTTCTTCAGCTTTGGAACTCAGAATCAAACGTGAGAACTTTATCGC
TGCCGAGATGGAGAAAAACCACAAAGAAAGAACCGGTAAACGAAAACCAC
GCCCTGATGATGACCGCAATGACGTCACACTTTCAGGGGAAATCACTAAC
CGTGGACACGCAGACTCGTCACTGTAAGCTACGTACAATCCACGTTTTTA
TTTTAGTGAGGTCGACCATACAGCTGGTCACTTTTGATTGGCGTCTATAG
AAACAATAGAACGATGCAATCTATTCAGATCTTGGTACAAAACTGCAATG
AAAACTCGGCATCAAAACTCTTATTAAAAATGATAAAAATGATACAAAAA
TTCATAAAAAAAGTATTTTTAGGTGAAACAAAACATAGGGAAAAGACAAT
GCTACTTAATTTGAAGGCGGACTACATTTATTATTTCTATTTGGGAACTA
GCGTAATTTTTTTGAGTTTTTCATAGAGCCAAATGTTGCTTTGTTTATTC
TTTTTTCTTTGTTTGTCTTTGCATTTCTTGCTAGCTTAAAGTTTCTTTGT
TATCCCAGTTTTAGCCTAGTCTGCTAATTCTAAACCTAAAATTGAGCTTT
CTGATTGGATGAGAGTTGGTAGATAACGAACGTGATTGGCTAATACATTT
CTTATTTCGTTTCCAGGTCACCTGATCATACTCATACAACATACATCTAA
ATACCATACCCTCAAACCACATTCTAACTTTTTCCATACAAATATATGTA
GAGTAGAAGCCAGAAAACCTTGGATATGTTTATAAGTCTCAAACCATGCA
TGTTTCTCTAACAATTCCATTATTTTCTCACATTTTCTGCATGCTGCAAA
ATTGTTAGGACTGCATTTTGTTAGGTCTTGCACTTGATATTTTTCTTTGC
TGAAGCACAGTGAAGAAAACCAAAAGTTTGAACTCTTTATTTACGCACAA
TTTTATACACAATCACAAATTCATGATATTAATGATACCTCGGTTTTAGC
CAGTAGTGGCTAAAATTTAAACTAGTCTAAAAATTGGATAAAATTTGCCA
CTACTGGCAAAAACCTGGGTCTTTCCGTAGAAAACATTACGTCATGAATA
TCATGAATAAGGAGTCATTCAGCATTACTCAGACGTTAGTTCTAGATAAG
TTCTAACTCTCTTTTTCACTCACTTTTTCTCTATGCACCACTCTCTGCAT
TTTTCTTGCAAAGTATTTTTATAGGTATCTTTAATATTCTTAGGAAATGA
TCTTTAATTTATTCACTTTTTGTAGTATCGTACACGTAATGTTATTTTTT
TCGTTTATTTTTATACTTTTTCGTTCGTAGATAATCTTCAAAAATATTTT
TTTACACTACTAACCACCAAAAAATACACTTATTATTCAGCTTAATGATT
ACTGGCAATTTTCTTTTGTATTTTTTGTGTTTCTTTAAAATGACACTTTT
ATAGTCTTGGGAATTAATGTTACATACTTAATTTATATTTTCTTGGGTGT
ATTTTCAGTTTTTTAGCACTTCCTTTTTGTTTCTTTTTGCTGGCATACAG
CCACGTTGTCCAAACGTTTGAACGGTTTATATTTTCATTTGTTTACCCTC
TGTTATTCCCAAATAGCATTAATTTATCTTAAAACATTATTTTTTTATTT
CAATTTTTTTGGGTAAAACTATAACTAAGTACTAAATTTCTTTTTTTTTC
AATTATTTTTTAATATGGCAACTTTTGGTTTTTCTCTTGTAAAAATTATA
TTGGAAAAATATATTTTAAGAAACTTGTATATGATATTTGTGTACTCTGT
GTCTTCAATTATAGTTGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065986-exon-scaffold_448-1575043694:647712..647923 | TCONS_00065986-exon-scaffold_448-1575043694:647712..647923 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:647285..647472 | TCONS_00065986-exon-scaffold_448-1575043694:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:645978..646195 | TCONS_00065986-exon-scaffold_448-1575043694:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:645535..645651 | TCONS_00065986-exon-scaffold_448-1575043694:645535..645651 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:644367..644404 | TCONS_00065986-exon-scaffold_448-1575043694:644367..644404 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:643601..643760 | TCONS_00065986-exon-scaffold_448-1575043694:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1575043694:641950..643107 | TCONS_00065986-exon-scaffold_448-1575043694:641950..643107 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:647712..647923 | TCONS_00065986-exon-scaffold_448-1510915933:647712..647923 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:647285..647472 | TCONS_00065986-exon-scaffold_448-1510915933:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:645978..646195 | TCONS_00065986-exon-scaffold_448-1510915933:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:645535..645651 | TCONS_00065986-exon-scaffold_448-1510915933:645535..645651 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:644367..644404 | TCONS_00065986-exon-scaffold_448-1510915933:644367..644404 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:643601..643760 | TCONS_00065986-exon-scaffold_448-1510915933:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1510915933:641950..643107 | TCONS_00065986-exon-scaffold_448-1510915933:641950..643107 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:647712..647923 | TCONS_00065986-exon-scaffold_448-1491911889:647712..647923 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:647285..647472 | TCONS_00065986-exon-scaffold_448-1491911889:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:645978..646195 | TCONS_00065986-exon-scaffold_448-1491911889:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:645535..645651 | TCONS_00065986-exon-scaffold_448-1491911889:645535..645651 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:644367..644404 | TCONS_00065986-exon-scaffold_448-1491911889:644367..644404 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:643601..643760 | TCONS_00065986-exon-scaffold_448-1491911889:643601..643760 | Clytia hemisphaerica | exon |
TCONS_00065986-exon-scaffold_448-1491911889:641950..643107 | TCONS_00065986-exon-scaffold_448-1491911889:641950..643107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_448 | supercontig | scaffold_448:641950..647923 - |
Blast
BLAST of TCONS_00065986 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.047e-47 Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 2
Query: 140 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 841
P+W DY + + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA F+ +RRP+A RA+DIG WY IL + S I N FV+A TS+ IP+LVY Y Y G E G+ SLS F I++ P++ + +F+ T KYC Y Y + S PY L +W + +ARLAFI+ F+ LV I +I YL+PD+PK L R++RE ++ AE+E+ KER
Sbjct: 693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940
The following BLAST results are available for this feature:
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