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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065985 ID=TCONS_00065985|Name=TCONS_00065985|organism=Clytia hemisphaerica|type=transcript|length=2523bp ATTTCTTGTAGATTCTTGAAGACCAAATACCGCGATTATAAAGGCAAAAA ACAACATTTGTACGAATCTAGCGAGGAACCAAGATGGGTTACTGATTATG AAGGAGAAATGCAAACAAAATTCTCGCTTTTCTGGCAATACTTAGAAATT GTACTTCAATACGGATTCGTCACTATGTTTGTCGCTGCTTTCCCATTGGC TCCTTTGTTTGCCTTGATTAACAACATGGTGGAAATTCGTCTCGATGCTT CAAACTTCATTCACAATTTCCGCCGACCCGTAGCAGAGCGAGCGGAAGAT ATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACCACCTTCTCAACAAT CGTCAATGGATTTGTATTGGCTTTCACATCAGAATTGATTCCTAAACTCG TCTACAGATATTACGCCTCAACCACTGGTAGCTTAGAAGGATTCACTGAA TGGAGTTTATCCAAATTCCCGATTGCCGAAATCGGGGCAAATGGACGACC CGATAATCCTCAATTAAATATTCCCGATTTCAATGCCACAGCTAATAAAT ACTGTCTTTACCCTGGTTACCATGAATCAAAGGCACCTTACAAACGTGAT CTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTTATCTTGGCCTT CCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTATCTGGTACCTG ACGTTCCCAAAACTTTGGAACTCAGAATCAAACGTGAGAACTTTATCGCT GCCGAGATGGAGAAAAACCACAAAGAAAGAACCGGTAAACGAAAACCACG CCCTGATGATGACCGcaatgacgtcacactttcAGGGGAAATCACTAACC GTGGACACGCAGACTCGTCACTGTAAGCTACGTACAATCcacgtttttat tttagtgagGTCGACCATACAGCTGGTCACTTTTGATTGGCGTCTATAGA AACAATAGAACGATGCAATCTATTCAGATCTTGGTACAAAACTGCAATGA AAACTCGGCATCAAAACTCttattaaaaatgataaaaatgatacaaaaat tcataaaaaaagtatttttaggTGAAACAAAACATAGGGAAAAGACAATG CTACTTAATTTGAAGGCGGACTACATTTATTATTTCTATTTGGGAACTAG cgtaatttttttgagtttttcataGAGCCAAATGTTGCtttgtttattct tttttctttgtttgtctTTGCATTTCTTGCTAGCTTAAAGTTTCTTTGTT ATCCCAGTTTTAGCCTAGTCTGCTAATTCTAAACCTAAAATTGAGCTTTC TGATTGGATGAGAGTTGGTAGATAACGAACGTGATTGGCTAATACATTTC TTATTTCGTTTCCAGGTCACCTGATCATACTCATACAACATACATCTAAA TACCATACCCTCAAACCACATTCTAACTTTTTCCATACAAATATATGTAG AGTAGAAGCCAGAAAACCTTGGATATGTTTATAAGTCTCAAACCATGCAT GTTTCTCTAACAATTCCATTATTTTCTCACATTTTCTGCATGCTGCAAAA TTGTTAGGACTGCATTTTGTTAGGTCTTGcacttgatatttttctttgct gAAGCACAGTGAAGAAAACCAAAAGTTTGAACTCTTTATTTACgcacaat tttatacacaatcacaaattcatgatattaatgatacctcggttttagcc agtagtggctaAAATTTAAACTAGTCTAAAAATTggataaaatttgccac tactggcaaaaacctgggtctttccgtagaaaacattacgtcatgaatat catgaataaggagTCATTCAGCATTACTCAGACGTTAGTTCTAGATAAGT TCTAACTCTCTTTTTCACTCACTTTTTCTCTATGCACCACTCTCTGCATT TTTCTTGCAAAGTATTTTTATAGGTATCTTTAATATTCTTAGGAAATGAT CTTTAATTTATTCACTTTTTGTAGTATCGTACAcgtaatgttattttttt cgtttatttttatactttttcgtTCGTAGAtaatcttcaaaaatattttt ttacactACTAACCACCAAAAAATACACTTATTATTCAGCTTAATGATTA CTGgcaattttcttttgtattttttgtgtttCTTTAAAATGACACTTTTA TAGTCTTGGGAATTAATGTTACATACttaatttatattttcttgggtgta ttttcagttttttagcacttcctttttgtttctttttgctGGCATACAGC CACGTTGTCCAAACGTTTGAACggtttatattttcatttgtttaccCTCT GTTATTCCCAAATAGCATTAATTTATcttaaaacattatttttttatttc aatttttttgggtaAAACTATAACTAAGtactaaatttctttttttttca attattttttaatatggcaacttttggtttttctcttgtaaaaattatat tggaaaaatatattttaagaaaCTTGTATATGATATTTGTGTACTCTGTG TCTTCAATTATAGTTGATCTACG Run BLAST on NCBI transcript from alignment at scaffold_448:641950..647862- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065985 ID=TCONS_00065985|Name=TCONS_00065985|organism=Clytia hemisphaerica|type=transcript|length=5913bp|location=Sequence derived from alignment at scaffold_448:641950..647862- (Clytia hemisphaerica) ATTTCTTGTAGATTCTTGAAGACCAAATACCGCGATTATAAAGGCAAAAA
ACAACATTTGTACGAATCTAGCGAGGAACCAAGATGGGTTACTGATTATG
AAGGAGAAATGCAAACAAAATTCTCGCTTTTCTGGCAATACTTAGAAATT
GGTAAGTATGCTATAAGACTGTTTTTTGTGTTCGATGTTAAAGAGCTGAT
TATGTCCAGCTCAGAAACAAATATGATCACGCAACGATAACCGCACTGGA
GTGATGCGAGATCGTCGAATCATGAATGTCTAAAATTTAAAATCTCTTTT
TTGAGGTAATACTTTCGTTAATAAATTTTCAAGGTTGTTTTACAATCTTC
ACTTGATTGTACGAAATTCTTCATTTTCATTTTCTCTCAGTACTTCAATA
CGGATTCGTCACTATGTTTGTCGCTGCTTTCCCATTGGCTCCTTTGTTTG
CCTTGATTAACAACATGGTGGAAATTCGTCTCGATGCTTCAAACTTCATT
CACAATTTCCGCCGACCCGTAGCAGAGCGAGCGGAAGATATCGGAGCTTG
GTATTCGATCCTTGCTACCTTAACCACCGTAAGTAGTCCTTTTAGTGTTC
TGAATTAGTAAGTAAGTAAGTAATGAATTTATTTGTCTTAATAAGCGAGA
CGAGCGACCACACTCATAGACATAAAACTAAACTAAGGAGGTGGCCGCAC
GCTACTGTTACAAGAAAAAATAGTTTCTAAGATCTTACTAGGATACATTG
AAAATAATTTTTTTATATATTTCGATTGCATTAGTTGGTATTCTGTACTG
CAACTTTCCATTATGAAAGCAATTGCGGTAATCTGTAAAGGCAATCTTTT
ATGCAATCCTGATGTTAACGGCCAGAATCGTAAGCTGGTTGGTTGCATCC
ACTAACGGATTCGTGCTCCTTATAGCTATACTACTTATACTTAAAGGAAG
AAATTTTTGCGGGAATTTAATTTGGCGGATAGCCGAAAAAGTTTTTTCAG
GAAATTTAATTTAGCGGTTTACTTGGCGGGAATTTAATTTGGCAGATGAA
GGACATTTTTGTCCAAAAAACGCCATTAAAAAAGGAAATACCTGTTTTAA
AGCCTAAAGTAGCACACATTTTGGGGAATAAATAGGGCAATTTAAATTTG
GCGGGACTTAAATTGGCGGATTTTGACCAAATCCGCCAAATTTAAGTTCG
CGCCAAAATTTCTTCTTATAAGGTATCTGCGGTTTTGTAGAGGTCTGAGA
TTCGGACTACAATAATCACGGAACTTTTTTGAGCAAAACTTTCTGAGCAA
AACTTTTTAAGCAAAACTTTTTAAGCAAAACTTTTTAAGCAAAATTTTTA
AGCAAAACTTTTTAAGCAAAACTTTAAAAAACCTCAATATTTACCGTCTG
CGGAGCCACCTGTGCCCCATGCGTTGGTCTCGTGTTTGAGATAATAATAA
GCTGTCTGACATCTCGCGATGCGTGTGATCTTTCCTATAAATTTCTACTT
TATTTGCTACACGGAAATCTAAAATCCGAATAATACGTTGATGGACTTTG
AAGTTTTTGAGTTGTTCAGCTTTTCAATTGTATGACTTCGATTGCCTTCC
TCTCTTAGCCTTAGCCTTTGTTAATTCAGTTGGAATTTATACCAATAATA
TCTGATTCATCTTTCAGTTCTCAACAATCGTCAATGGATTTGTATTGGCT
TTCACATCAGAATTGATTCCTAAACTCGTCTACAGATATTACGCCTCAAC
CACTGGTAGCTTAGAAGGATTCACTGAATGGAGTTTATCCAAATTCCCGA
TTGCCGAAATCGGGGCAAATGGACGACCCGATAATCCTCAATTAAATATT
CCCGATTTCAATGCCACAGCTAATAAATACTGTCTGTAAGTATTATTTTA
TGAAAGTCGTTTTTGAATTGAACTCTTTTTATTTCTCTTTCAATAAGTAA
ATATAGAGCTATTTATGGTTACACGCTTTTTATTCATAAGAACATTAAAA
AGATTCTTAACTTTTTTACTTCCGTTGAGTCGAGCCTCAAACATTCTTAT
TTTAACCATTTTGTGAGTATTTTAAGTGCGATTTTCTACGAAATCAAATA
TCTTAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTATAATTTATTCCGG
CCATCGAAGTTTATGTTTATTTAAGCCCATTATAAATTAACACCTTTCTC
TTTTCCCACAGTTACCCTGGTTACCATGAATCAAAGGCACCTTACAAACG
TGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTTATCTTGG
CCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTATCTGGTA
CCTGACGTTCCCAAAAGTAAGTATTTGCACCTTTATTGAAACATTTCTAA
TCTTAAAATGATCCATTGAAGGTTTGTTTTTATTATAATATTCTATTCCA
TCAATCGAAAATTTCCTTTGTTCTTATAAATAGCTATTGTATTCTAACAA
AGGTTTCAGACAAAAGTTCCCTGAGTCTAAAATGCTTATTTTATCCTAAA
TATTCAATAAATTACGGTTTAAACGATATATCTGACATTAAATAAAAGTT
NTTGACATTAAATAAAAGTTAGGAATTTACCGATAATTTCATGGCAAAAG
CTCTATTATTTCAGGAGCTGTCGCCATTAATCTGACCTAGGGTTAAAAGC
AACGAAGTTAAATATTTATTGAAATGTTGCATTAATGTAAAATGAGGGAA
GATGATACCTTTTTCGTTGACTTGCGTTATTGTGAAGCGAATATACACGA
GCGAAGCATGTTTTCTATAGTGTGTTTGTACCCTTAAATCAGCAGAGCAA
GTAAACTTCATGTGTTTTTACGGTACTGAGAAAGTCTGTTCAATTCGTCA
GATTTCACAAAACGTTTAAAATGATGTTTTTTCATTCAAATAAATTTCTT
ATTTCTTCAGCTTTGGAACTCAGAATCAAACGTGAGAACTTTATCGCTGC
CGAGATGGAGAAAAACCACAAAGNATTTTATGAAAGTCGTTTTTGAATTG
AACTCTTTTTATTTCTCTTTCAATAAGTAAATATAGAGCTATTTATGGTT
ACACGCTTTTTATTCATAAGAACATTAAAAAGATTCTTAACTTTTTTACT
TCCGTTGAGTCGAGCCTCAAACATTCTTATTTTAACCATTTTGTGAGTAT
TTTAAGTGCGATTTTCTACGAAATCAAATATCTTAAGTCTGCAAAGCCTT
AAAATGTTCTTAACTTATAATTTATTCCGGCCATCGAAGTTTATGTTTAT
TTAAGCCCATTATAAATTAACACCTTTCTCTTTTCCCACAGTTACCCTGG
TTACCATGAATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTA
TCACATCTGCTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATC
ACAATCACATGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAAGTAA
GTATTTGCACCTTTATTGAAACATTTCTAATCTTAAAATGATCCATTGAA
GGTTTGTTTTTATTATAATATTCTATTCCATCAATCGAAAATTTCCTTTG
TTCTTATAAATAGCTATTGTATTCTAACAAAGGTTTCAGACAAAAGTTCC
CTGAGTCTAAAATGCTTATTTTATCCTAAATATTCAATAAATTACGGTTT
AAACGATATATCTGACATTAAATAAAAGTTAGAAATTTACCGAAAATTTA
ATGGCAAAAGCTCTATTTCAGGAGCTGTCGCCATTAATCTGACCTCCGAA
CAGAAATAGCTAGGGGGGCCTAGCACGAATAGGGTTAAAAGCAACGAAGT
TAAATATTTATTGAAATGCTGCATTAATGTGAAACGAGGGAAGATGATAC
CTTTTTCGTTGACTTGCGTTATTGTGAAGCGAATATACACGAGCGAAGCA
TGTTTTCTATGGTGTGTTTGTACCCTTAAATCAGCAGAGCAAGTAAACTT
CATGTGTTTTTACGGTACTGAAAAAGTCTGCTCAATTCGTCAGATTTCAC
AAAACGTTTAAAATGATGTTTTCTCATTCAAATAAATTTCTTATTTCTTC
AGCTTTGGAACTCAGAATCAAACGTGAGAACTTTATCGCTGCCGAGATGG
AGAAAAACCACAAAGAAAGAACCGGTAAACGAAAACCACGCCCTGATGAT
GACCGCAATGACGTCACACTTTCAGGGGAAATCACTAACCGTGGACACGC
AGACTCGTCACTGTAAGCTACGTACAATCCACGTTTTTATTTTAGTGAGG
TCGACCATACAGCTGGTCACTTTTGATTGGCGTCTATAGAAACAATAGAA
CGATGCAATCTATTCAGATCTTGGTACAAAACTGCAATGAAAACTCGGCA
TCAAAACTCTTATTAAAAATGATAAAAATGATACAAAAATTCATAAAAAA
AGTATTTTTAGGTGAAACAAAACATAGGGAAAAGACAATGCTACTTAATT
TGAAGGCGGACTACATTTATTATTTCTATTTGGGAACTAGCGTAATTTTT
TTGAGTTTTTCATAGAGCCAAATGTTGCTTTGTTTATTCTTTTTTCTTTG
TTTGTCTTTGCATTTCTTGCTAGCTTAAAGTTTCTTTGTTATCCCAGTTT
TAGCCTAGTCTGCTAATTCTAAACCTAAAATTGAGCTTTCTGATTGGATG
AGAGTTGGTAGATAACGAACGTGATTGGCTAATACATTTCTTATTTCGTT
TCCAGGTCACCTGATCATACTCATACAACATACATCTAAATACCATACCC
TCAAACCACATTCTAACTTTTTCCATACAAATATATGTAGAGTAGAAGCC
AGAAAACCTTGGATATGTTTATAAGTCTCAAACCATGCATGTTTCTCTAA
CAATTCCATTATTTTCTCACATTTTCTGCATGCTGCAAAATTGTTAGGAC
TGCATTTTGTTAGGTCTTGCACTTGATATTTTTCTTTGCTGAAGCACAGT
GAAGAAAACCAAAAGTTTGAACTCTTTATTTACGCACAATTTTATACACA
ATCACAAATTCATGATATTAATGATACCTCGGTTTTAGCCAGTAGTGGCT
AAAATTTAAACTAGTCTAAAAATTGGATAAAATTTGCCACTACTGGCAAA
AACCTGGGTCTTTCCGTAGAAAACATTACGTCATGAATATCATGAATAAG
GAGTCATTCAGCATTACTCAGACGTTAGTTCTAGATAAGTTCTAACTCTC
TTTTTCACTCACTTTTTCTCTATGCACCACTCTCTGCATTTTTCTTGCAA
AGTATTTTTATAGGTATCTTTAATATTCTTAGGAAATGATCTTTAATTTA
TTCACTTTTTGTAGTATCGTACACGTAATGTTATTTTTTTCGTTTATTTT
TATACTTTTTCGTTCGTAGATAATCTTCAAAAATATTTTTTTACACTACT
AACCACCAAAAAATACACTTATTATTCAGCTTAATGATTACTGGCAATTT
TCTTTTGTATTTTTTGTGTTTCTTTAAAATGACACTTTTATAGTCTTGGG
AATTAATGTTACATACTTAATTTATATTTTCTTGGGTGTATTTTCAGTTT
TTTAGCACTTCCTTTTTGTTTCTTTTTGCTGGCATACAGCCACGTTGTCC
AAACGTTTGAACGGTTTATATTTTCATTTGTTTACCCTCTGTTATTCCCA
AATAGCATTAATTTATCTTAAAACATTATTTTTTTATTTCAATTTTTTTG
GGTAAAACTATAACTAAGTACTAAATTTCTTTTTTTTTCAATTATTTTTT
AATATGGCAACTTTTGGTTTTTCTCTTGTAAAAATTATATTGGAAAAATA
TATTTTAAGAAACTTGTATATGATATTTGTGTACTCTGTGTCTTCAATTA
TAGTTGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065985-exon-scaffold_448-1575043694:647712..647862 | TCONS_00065985-exon-scaffold_448-1575043694:647712..647862 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1575043694:647285..647472 | TCONS_00065985-exon-scaffold_448-1575043694:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1575043694:645978..646195 | TCONS_00065985-exon-scaffold_448-1575043694:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1575043694:645623..645651 | TCONS_00065985-exon-scaffold_448-1575043694:645623..645651 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1575043694:644367..644492 | TCONS_00065985-exon-scaffold_448-1575043694:644367..644492 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1575043694:641950..643760 | TCONS_00065985-exon-scaffold_448-1575043694:641950..643760 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:647712..647862 | TCONS_00065985-exon-scaffold_448-1510915933:647712..647862 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:647285..647472 | TCONS_00065985-exon-scaffold_448-1510915933:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:645978..646195 | TCONS_00065985-exon-scaffold_448-1510915933:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:645623..645651 | TCONS_00065985-exon-scaffold_448-1510915933:645623..645651 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:644367..644492 | TCONS_00065985-exon-scaffold_448-1510915933:644367..644492 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1510915933:641950..643760 | TCONS_00065985-exon-scaffold_448-1510915933:641950..643760 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:647712..647862 | TCONS_00065985-exon-scaffold_448-1491911889:647712..647862 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:647285..647472 | TCONS_00065985-exon-scaffold_448-1491911889:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:645978..646195 | TCONS_00065985-exon-scaffold_448-1491911889:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:645623..645651 | TCONS_00065985-exon-scaffold_448-1491911889:645623..645651 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:644367..644492 | TCONS_00065985-exon-scaffold_448-1491911889:644367..644492 | Clytia hemisphaerica | exon |
TCONS_00065985-exon-scaffold_448-1491911889:641950..643760 | TCONS_00065985-exon-scaffold_448-1491911889:641950..643760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_448 | supercontig | scaffold_448:641950..647862 - |
Blast
BLAST of TCONS_00065985 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 5.090e-47 Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 1
Query: 79 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 780
P+W DY + + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA F+ +RRP+A RA+DIG WY IL + S I N FV+A TS+ IP+LVY Y Y G E G+ SLS F I++ P++ + +F+ T KYC Y Y + S PY L +W + +ARLAFI+ F+ LV I +I YL+PD+PK L R++RE ++ AE+E+ KER
Sbjct: 693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940
The following BLAST results are available for this feature:
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