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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065980 ID=TCONS_00065980|Name=TCONS_00065980|organism=Clytia hemisphaerica|type=transcript|length=6966bpRun BLAST on NCBI transcript from alignment at scaffold_448:573485..607529- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065980 ID=TCONS_00065980|Name=TCONS_00065980|organism=Clytia hemisphaerica|type=transcript|length=34045bp|location=Sequence derived from alignment at scaffold_448:573485..607529- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065980 vs. Swiss-Prot (Human)
Match: MILK1 (MICAL-like protein 1 OS=Homo sapiens GN=MICALL1 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.108e-17 Identity = 44/105 (41.90%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 4099 LELEGVAMEKKLRELGDDEPEDAYLLTWFDLVNQKNLLLRKENELIYMSQELDLLQSQRHAEFELRQLMMKSEHEKTEADRDREEVLLSEILKMVTERSNIVEKM 4413
LE GV +E+KLR ++ ED L+ WF L+++K+LL+R+E+ELIY+ ++ +L Q Q E+ELR L+ K E + TE DR RE+VL+ E++ ++ +R+ I+ +
Sbjct: 698 LEHRGVLLEEKLRGGLNEGREDDMLVDWFKLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAREKVLMQELVTLIEQRNAIINCL 802 The following BLAST results are available for this feature:
BLAST of TCONS_00065980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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