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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065969 ID=TCONS_00065969|Name=TCONS_00065969|organism=Clytia hemisphaerica|type=transcript|length=1949bp
TTTGACTAACATTGTAtgttcttttttttatctttttcagataattaaat
aaaaataacgaataagaaaatagaaaattaactgaaaaaaCAGCAGACAA
GATTTCAGTATGTCAAGGATTTTGAGTTGATGAGCCTTTCAGAGTTATGG
AGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGAGACAG
ACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTTTATTC
CGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTTACATA
GAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGAtaatcaaagaa
aatcaacaaacttCTAAACAGGAAGATAACCTGCCACAGAgccaagaaaa
agaagaacaaagagAACGCGCGATAGGACAGACTATCATCAAAGCGGGAG
AAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTCTTTTA
CATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACGGGGAA
AGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGAACTGGGA
AGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTTCTAT
TCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTGAGAA
ATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCTATCA
TCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAAGGAA
GAAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATGG
GTTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAAC
ATCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGCA
TTCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGAA
TTCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGTA
TAGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTCA
GGAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTCG
GGAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCAC
TTTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGAG
AATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATTT
GTTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACTG
TCCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGATCAGGT
CAGTGTCACTGAAAATTCAACCTCGGCaagatatttgttttgaaaattat
tgcTGATCAGATTTTTAACAAATGCTTTCCGACGATACTATCAGAGTGCC
GACAAGTGTCCCTTTTACTTTGAGTCTTCAAAGAAGGGCTGTTCATTCCA
GCTTGGTCACATCACATTTCTCAGATATTCAAACTCAAGTAGGGCAAACT
CCTTGACCTTGCTCTTTATTTTCACATGTTTTAAATCTGTAAATTTATCA
GAATTGTACCCATATGATTGATGTtatatttctttaatttattCTTACAT
TACGCCAGGATTTCATTTAATTAAAAGTGGTAACTTAGCCTCTACTAAGC
GACTACCAGTTTCCATGATTAACAAACAACGGTTCGTTAGTGGTCAAGGA
ACTGGCTAAGGTAAATAATATTGACCAGTTTGagttggcacttaaagggt
taacatATTTATATCAGtatgttggacggtgaaaaagaatgcggctatta
tattttgatttttcccgacatgtttcggactcggtccgttctcaaggga Run BLAST on NCBI transcript from alignment at scaffold_448:475152..478699- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065969 ID=TCONS_00065969|Name=TCONS_00065969|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_448:475152..478699- (Clytia hemisphaerica)
TTTGACTAACATTGTATGTTCTTTTTTTTATCTTTTTCAGATAATTAAAT
AAAAATAACGAATAAGAAAATAGAAAATTAACTGAAAAAACAGCAGACAA
GATTTCAGTATGTCAAGGATTTTGAGTTGATGAGCCTTTCAGAGTTATGG
AGAAGCTTGTATTAGATATTGAAAGTATATCACGGCTTGCAACGAGACAG
ACATCAGTCAAAGAGTTTGCTACTGTGTTAGAACAGTTGGACGTTTATTC
CGGTAAGATCAGAGAGAAATTAAAGGAACCAAATCTACCTCAGTTACATA
GAGACTCTTTAAGAGAAATTCAGAAATGTATCTCTCAGATAATCAAAGAA
AATCAACAAACTTCTAAACAGGAAGATAACCTGCCACAGAGCCAAGAAAA
AGAAGAACAAAGAGAACGCGCGATAGGACAGACTATCATCAAAGCGGGAG
AAGTGAGATTTCAAGATATCGCTGGCCTAGACGTGGTCAAATCTCTTTTA
CATGAAGCTGTTATATTACCGGTGCAATACCCTCATCTTTTCACGGGGAA
AGTGAAACCATGGAAAAGTATTCTGTTGTATGGACCACCCGGTATGAATG
AATTTTTTATATTTATTCGTTTTAGTCCTTGTTTTCTATCATCAAGTAAT
TTTTTTTAGATCTTTATGACATTTTCATCGCCCAAATAAGGCAATTCTGT
AGTCTTAATTGGCCCCATTTATCTCAATTAATTAGACTTGATGCTTTCGC
TGTTAATCACCACGGGGCACTCGGTGTGAAGCGTTTTTAAGTCATATTTT
AGACAGCCGACTATCTATTCGTTCCTCTATGAAGTTAGATCGCCGCCAAA
ATTCGATCCTTCAAGTCGTCCCGTCGTACTAGAAGTCGTCCCGTCGCAAT
TTTCGGTAGTCGAATCATCCCAAGTTTCAAGTCCTCCCGTCGCACTAGAA
GTTCGCAGGTCGTAATTCTTTTAAGTCGAGTCATACCAAGTTTCTAGTGG
TTCCTATCAGAAGTTAACTCGTCGGAACTTGGTACATGTTCCAATCATGT
ACGTTTAACTGTTCTCATAAGTGTTCATGTCATCCATCAGGTATATCATG
GAGATAAAAATATAAATTCACATTGTTTTCAAAATTTTGACATGGCTCTA
ATCAATAAGTAAATTTCCACACGTGTGTTTCCACCAGCTTCCATTTTGAA
CATTGAAGTTTTCCCTGGGTGAGCTCTGCACGTGCACAAAAACTGCACAC
CACACGAACATAACATTATCTCCACAATATTTTGATTTTTGATATACAAA
ACAATAAAGTTTTTTTCCAGAATAGCCTAGAGTCCAACTTTTTGGGATGA
GTCGACTGCCGAAATTTGCGACGAGTCAACTTCTGAAGCAACGACTCGAC
TTAAAATTTGGAATGTTTCGACTTCCAAAAGATTCCGACTTGCAAACTTC
TAATGCGACCTGCGGACTTCTAGTGCGACGGGACGACTTCTAGTACGTCG
GGACGACTTGAAGGATCGAATTTTGGCGGTGATCTAACTTCATAGTCCTC
TCCATATTCTAATTCAGAGGCCAAATTAGTGATAATAGAGTATATACAAT
TATTGCTTTATAAATAAGAACTGGAAAAGAAAGATTTTATGCTCAAAGTG
CCAAAATTGCAAGAACAGCCTCAAAAAATATATATTGGATTCTTAAAAGG
AAGAGTGTATTGAAAGGAATTTGTTTGAATTTATTTCTCAGGAACTGGGA
AGTCAACGATCGCTCACGCAGTTTCAACAGAGGCCAATTGTACCTTCTAT
TCTTTATCTAGCTCTGATCTTCTCTCCTCTTGGTTTGGAGAAAGTGAGAA
ATTGATTAAAGAGCTCTTCTCCCAAGCTAGAAGCAACCCACGTGCTATCA
TCTTTATTGATGAGATTGATAGTATTTGTAGGAAACGATCAAGCAAGGTA
CTGCGGTAACATTTCGAGAATTTGGTAACCCAGGGGTGATGTTCAACGTT
TGATGGTTTCCCTTAATATTTATGTCAAAAATATAAATTTCTTCTTGAAT
TTTCGGCAAATTAAAGTAAGATAAAAACAAAAACAAAGTTCTATTAAATT
GAAGAATCTCTTTTTTACAAAGGCTGCAAGGATTGGTGTTTTGTGTTTAA
TGGGTTGAATATGATTGATAGATTTTTTAGCCATTAGGAAAACGTCAACC
GCGATTTGAGATGCCTTTTTTATTGGTGCTATCAAAAGGTGCATGGGTTG
CAGTGCTCAAAAGGGTATCTTTATCTACTGGCAGTATCCAGTCTAACACT
TGTGTGACGTACTTTTCTTCTGGAATGGCTGTTTTTCTATGCCTTACTTT
TCTGTAGGGGAGAAATTGGTGACAAAAACTTTTTTTATTTCCACAGGAAG
AAGAAACTACACGCCGTATAAAAAACGAACTTTTAAAACAAATGGATGGG
TTCAGCAGAACATCTACATCTGCTTCTCCATCCGACGAGCCTAAGAAACA
TCTCTTCGTTTTATGTGCTACAAACTGTCCTTGGGAACTCGATACAGCAT
TCTTACGTCGATTTAGTAAACGGATATACATCCCTCTACCGGATGCGAAT
TCGCGTAAACAGCTATTTCGCATCCATTTAAAAGACGTTGAAATGAGTAT
AGATGATTCAGATTATGACCAACTTGTCGATAAAACGGATGGTTATTCAG
GAAGTGATATCTCGAATTGTATTTCTGAAGCTGTTATGGAGCCGATTCGG
GAATTAAGAGATTGCTCAACGTGGAAATGGAACGATTCGAAAATGTCACT
TTCTCCAACGATTAAAAGCGACGCTAGCGCTATATCATTGCGCCTGGAGA
ATATACCACGTGAAAAAGTTCAACCTCGTAAATTAAATACGAAAGATTTG
TTTCACTCGATTTCGTTGAATAAGAAAACAGTATCGCAAGAAGAAACTGT
CCGATTTCAACAATTTACTGAAGATTTCGGACAAAATGGCTGATCAGGTC
AGTGTCACTGAAAATTCAACCTCGGCAAGATATTTGTTTTGAAAATTATT
GCTGATCAGATTTTTAACAAATGCTTTCCGACGATACTATCAGAGTGCCG
ACAAGTGTCCCTTTTACTTTGAGTCTTCAAAGAAGGGCTGTTCATTCCAG
CTTGGTCACATCACATTTCTCAGATATTCAAACTCAAGTAGGGCAAACTC
CTTGACCTTGCTCTTTATTTTCACATGTTTTAAATCTGTAAATTTATCAG
AATTGTACCCATATGATTGATGTTATATTTCTTTAATTTATTCTTACATT
ACGCCAGGATTTCATTTAATTAAAAGTGGTAACTTAGCCTCTACTAAGCG
ACTACCAGTTTCCATGATTAACAAACAACGGTTCGTTAGTGGTCAAGGAA
CTGGCTAAGGTAAATAATATTGACCAGTTTGAGTTGGCACTTAAAGGGTT
AACATATTTATATCAGTATGTTGGACGGTGAAAAAGAATGCGGCTATTAT
ATTTTGATTTTTCCCGACATGTTTCGGACTCGGTCCGTTCTCAAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065969-exon-scaffold_448-1575043694:478109..478699 | TCONS_00065969-exon-scaffold_448-1575043694:478109..478699 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1575043694:476753..476958 | TCONS_00065969-exon-scaffold_448-1575043694:476753..476958 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1575043694:475152..476303 | TCONS_00065969-exon-scaffold_448-1575043694:475152..476303 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1510915933:478109..478699 | TCONS_00065969-exon-scaffold_448-1510915933:478109..478699 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1510915933:476753..476958 | TCONS_00065969-exon-scaffold_448-1510915933:476753..476958 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1510915933:475152..476303 | TCONS_00065969-exon-scaffold_448-1510915933:475152..476303 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1491911889:478109..478699 | TCONS_00065969-exon-scaffold_448-1491911889:478109..478699 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1491911889:476753..476958 | TCONS_00065969-exon-scaffold_448-1491911889:476753..476958 | Clytia hemisphaerica | exon |
| TCONS_00065969-exon-scaffold_448-1491911889:475152..476303 | TCONS_00065969-exon-scaffold_448-1491911889:475152..476303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:475152..478699 - |
Blast
BLAST of TCONS_00065969 vs. Swiss-Prot (Human)
Match: VPS4A (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 3.692e-91 Identity = 165/414 (39.86%), Postives = 251/414 (60.63%), Query Frame = 3
Query: 198 QTSVKEFATVLEQLDVYSGKIREKLKEPNLPQLHR-----DSLREIQKCISQIIKENQQTSKQEDNLPQSQ--EKEEQRERAIGQTIIKAGEVRFQDIAGLDVVKSLLHEAVILPVQYPHLFTGKVKPWKSILLYGPPGTGKSTIAHAVSTEA-NCTFYXXXXXXXXXXWFGESEKLIKELFSQARSNPRAIIFIDEIDSICRKRSSKEEETTRRIKNELLKQMDGFSRTSTSASPSDEPKKHLFVLCATNCPWELDTAFLRRFSKRIYIPLPDANSRKQLFRIHLKDVEMSIDDSDYDQLVDKTDGYSGSDISNCISEAVMEPIRELRD-------CSTWKWNDSKM---SLSPTIKSDASAISLRLENIPREKVQPRKLNTKDLFHSISLNKKTVSQEETVRFQQFTEDFGQ 1385
Q +V+ F + + + +S K +E ++ + L R D LR +K + +KENQ K D+ + EK++ +E+ +G +++ +R+ D+AGL+ K L EAVILP+++PHLFTGK PW+ ILL+GPPGTGKS +A AV+TEA N TF+S+SSSDL+S W GESEKL+K LF AR + +IIFIDE+DS+C R+ E E RRIK E L QM G + VL ATN PW LD+A RRF KRIYIPLP+ +R Q+FR+HL ++ D++ +L KT+GYSG+DIS + +++M+P+R+++ C + N S M L+P D A+ + ++P +K+ + D+ S++ + TV+ ++ ++ ++F+EDFGQ
Sbjct: 33 QHAVEYFLHAI-KYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGT----------LVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435
The following BLAST results are available for this feature:
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