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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065960 ID=TCONS_00065960|Name=TCONS_00065960|organism=Clytia hemisphaerica|type=transcript|length=2131bpRun BLAST on NCBI protein sequence of TCONS_00065960-protein >TCONS_00065960-protein ID=TCONS_00065960-protein|Name=TCONS_00065960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp MVALKIAKPSVVFFFLLYAVLEVDCTLPKVTRVKSGNVGSLAGGTMLILERun BLAST on NCBI transcript from alignment at scaffold_448:423724..435474- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065960 ID=TCONS_00065960|Name=TCONS_00065960|organism=Clytia hemisphaerica|type=transcript|length=11751bp|location=Sequence derived from alignment at scaffold_448:423724..435474- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:423724..435474- >TCONS_00065960 ID=TCONS_00065960|Name=TCONS_00065960|organism=Clytia hemisphaerica|type=CDS|length=28575bp|location=Sequence derived from alignment at scaffold_448:423724..435474- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065960 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 7.568e-37 Identity = 149/557 (26.75%), Postives = 246/557 (44.17%), Query Frame = 2
Query: 305 LPKVTRVKSGNVGSLAGGTMLILEGVGFSE-DMYTTGK-----GNEVYFEHKISKEVLTCKLVMTDSNEKRIACETPPEPSSRDGDYHIKVKVDG----ESIYCTQ-------TFHYRNNQTPFIRKITSQSGFPGETMRIEGRFLS----KQISRIDGGKEGDGETFVADAREINKFFVGTSIGNAFDETNEIIGMQFDSNNYHTEGWVKIQAELKIPGSFNVSFITSLNAGRSRRLQSSLFVDATDEIYNYQTYALVHSIKPNKGSMEGGTTLEIHGEFFGTPSITKNVWIKVAGIKCEVIQHTREMIKCITGKADQNLLNGDLFAGGRGYFQEAWPNHRNYDVKTVRTRYNSTYPIKSLKTTEYALQDYNNYDKYEVKLSYAS--ARYEGFLRPPYSGMFRLMINCDDQGEFFISQGSQNRSRDNMTLVAFSYSHTNRNFWYRA-SQQSEPMYLDRNKEYFYQAYVADGGGSLYFQLGLFGEKTQHPNSRVNKARDEKQQIFIKSYHRPNVQILNMTNASLHTKFNISMDGKKSSQEISRNSTTKEIEKVFYDL 1903
+PKVT + GS+ G T L + G GFS+ + + G GN V S + +TC + S+ +I C T P + Y ++V VDG E+ C TF+ ++ +TP IR IT SG PG + I+GR + I+ GK + R + + G +++ + G++ D N G + + G NVSFI + GRS + + FV + ++I +QTYA V I P++GS+ GGTTL I G FF V + V G C+++ T I C T L ++ GGRG E W N R ++ + YN KT Y + + Y + + AR+ GFL P S ++R I DD+ + SQ + V +Y N N ++ + +Q+S+ ++L + KEY+ + + + S + +GL+ + + + A +E+Q I +S VQ++ + N N K +S + NS + ++ Y++
Sbjct: 30 IPKVTEIIP-KYGSINGATRLTIRGEGFSQANQFNYGVDNAELGNSVQLIS--SFQSITCDVEKDASHSTQITCYTRAMP---EDSYTVRVSVDGVPVTENNTCKGHINSWECTFNAKSFRTPTIRSITPLSGTPGTLITIQGRIFTDVYGSNIALSSNGK---------NVRILRVYIGGMPCELLIPQSDNLYGLKLDHPNGDM-GSMVCKTTGTFIGHHNVSFILDNDYGRSFPQKMAYFVSSLNKIAMFQTYAEVTMIFPSQGSIRGGTTLTISGRFFDQTDFP--VRVLVGGEPCDILNVTENSICCKTPPKPHIL--KTVYPGGRGLKLEVWNNSRPIRLEEI-LEYNE-------KTPGYMGASWVDSASYIWLMEQDTFVARFSGFLVAPDSDVYRFYIKGDDRYAIYFSQTGLPEDK-----VRIAYHSANANSYFSSPTQRSDDIHLQKGKEYYIEILLQEYRLSAFVDVGLYQYRNVYTEQQTGDAVNEEQVIKSQSTILQEVQVITLENWETTNAINEVQKIKVTSPCVEANSCSLYQYRLIYNM 553 The following BLAST results are available for this feature:
BLAST of TCONS_00065960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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