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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065954 ID=TCONS_00065954|Name=TCONS_00065954|organism=Clytia hemisphaerica|type=transcript|length=17265bp transcript from alignment at scaffold_448:376937..423076- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065954 ID=TCONS_00065954|Name=TCONS_00065954|organism=Clytia hemisphaerica|type=transcript|length=46140bp|location=Sequence derived from alignment at scaffold_448:376937..423076- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065954 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 1772.29 bits (4589), Expect = 0.000e+0 Identity = 1105/3256 (33.94%), Postives = 1707/3256 (52.43%), Query Frame = 2
Query: 920 IDIQQQQYPSPPVTGTFVLKYTGENGEEHFSRRIKPDVSEEEMREHVELAFHHI--TGHVKVVRKGTCSGYSWDITFYTVGGNKQQLEIINSTLAGLEMEKGVKTIQDGGMLFGPLTGEFLQTAETKPQVVVSINDIVSVCKGDCSFEYSDALTPTISSITPKTGKGGEASQEVTISCTGCLAGADKNDVTIGGVKCMITTATETEIKCRPGTSPAGNKPVVVNVHGKGKAKTSNGEPILFNYELEVSSMEPKSGAAAGAQITVKGNFDKEENITATFTKVTSSTSRKRRNADDVYVLAVRRVDEGQLMVTTNSMP---DAEYQLTITNGDHTYTTTEKFTADSSQNVAITSITPDTGLPVYGGVDIVIKGSNLKDDMKETEVHIIDPFGPRCEIQYLTQDEIRCTLPHITIIGEVTVLVHVKDKGTSL------SSITTELSVTTMDINSGSLAGGSRIKITGSGFGTNPEKVSVMFGDIPATNIFSTSDSEIVIESPSLAKTTAIDNNGRHREFGLGYAWSENLIEIQAGDEMKWSWTSNPLSPNKIG--IYLTQSSDALEFLEKDMICAQVKS--GDCTHRFDVPGTYYFTSGIVAQKDDFKLAFGGKIEVYAKEDRMVDVTV---------------------------------KIDGVTAPSSDSLSFEFLSQKTPTINSLKMDHEVDEIRGVVQNTITIEGSHFSGSNTENLIKFGGFDCIAEQSTETMVTCKMDTSQKPSMNTWLKVSMSVTGKGKAFVNIIDSYKSAVIFQQSLTSIEPAVGSFGGGTLVKIHGFGLDVGTLKSNLMDILTNEEHPVTIISQSYTEMNIITPELDFSDDLEKHLRVKDSAYNAWDQSLGNMADTKFTYKKDLTTILTNVSPKEYDTTGSIMTITLAGAPIGSTKDDFKVKVGGKEAKVTDYSSPDLKAEIPALVEGKQQVVVSVGVLGHAYLNKTLTNGTVIVQGKIDSVSPSSGSIHGNQAIVVRGNGFVPENTKVKVGNNFAECSSISEVQIDCVTPSGSASDQTVSVLVGAKSYPGSVKYTYDQAKSPTITSISPTKGVGGDTLTLDGSNFEGVKADYDIQVGSANCDVQTMTKTQIICILSPHQGGTVNLKMHLKGYGNANSDKSFVYNLDVNDPGTFQSGLGGGLTISLDGRGFS-SSTVVTICGENAEIKGAPTEQKLEFVSPLYE--QYEGVSSDVPCDIKIQQGGETKELTGAYTYKPSLTTKITEIVPNRSGTGGGVDIRITGQNF-QTTATASVLIAGVPCQIQPPITTTEIKCKTGESNKTAMGIDLELSFEGFGRSIPSEKKFDYIDLWSSKWSWGGNDPPKEDDMVVIEEGQTMLLDTDTPVLSMLLIKGGHLIFDRKDIHLQSKHILIVNNGSLQVGTEEQPFEHKAEITLHGHVRSTELPVYGAKSLSLRTGYLGLHGKHILNTWTRLSKTADVGATQMEVTLPVLDWEVGYEIVIASTSK--SMRENEVLIITAVEDNGKTIKFDPPLKYKHIALTQTIA-GRTIETAAEIGLLSRNVVVKGSVHDEWNGEIKACPKEFDPDQFATQTCFEGRYGDERGSDQFGVQIMIHSDKKDQGLAVAHFNHVEITHAGQAFRLGRYPIHFHMEGDVH-GSYVKGCAIHRSFNRAVTMHGVHNLVVERNVIYDILGNAYFMEDGIETGNVVRYNLAIFVKPSSSTLNVDITPAAYWVTNANNTVSHNAAAGGSHFGYWYQMFKHPEGPNFDRNICPRNVPMLEFKNNTAHSFGRYGLWVFPIYHPMKGGSCNSREHEPAHFHSLTTWNSMRGAECTECGSVRFVDFIALDNDVAGIEYIQANSQD-SPWG---GAMVKDSLIVGHSELRDIGSYDVRTSDQANCTQAGIWLPFSTRLTVSNVTLKNFDEDSCVTFKTCA---HCKPNDGGAIIRMNKLDFDNSPNRVSFPFQHASALMDEDGSLTGHTGGNILPTMKTLDPAKCTDDAASSFXXXXXXXXXXXXYAKVNFNNVHPKSINEKDAFFENSHGKDEVFFRMKAKSFPNGWTALVPINDVYTFSFKNSTQFVNITYDLQANELGPDDYLLLKHEFKNLPDHFKTV--SNGQKENLENLPAVGSNKHGDWFFDEQGMSMTYLVSGKG--------SSPLKPTPRN--IKMHTYRCFFEKCVVX---XXXXXXKGRPIDAKQWSQAESWAGAPAGYGGSDGRIPQENDNVMILPTWWMVFDIEQPVILDRLYVYGVLDFGNQ--------TYDQVLKANTILISGLSGQLIVGFPDQPVISNVIISLTGNHDSKDMPLTKDLNLGAKALGVFGLLQMYGKKHDVHWTRLEQSLAVGGTQISVEDAVDWEIGDEIIITTSSFVPEEAEKFTLTDISDDGMTLTLNRGATYKHTAFQQKI--NNYEVKMSAKVGLLSRNIRIEGANHPARSLEDQSFGCRVLVGKYAGDEGVPYRGKAQLNEVQFSNCGQYGWTESYDPRFSLSFLNLGDIAHGNESFVDGCSFNDGYNVAVGVYGTNNLTVENNVIYHTVGQGIDLEGTGNKLLNNLVIRSVAESTYKVDKKYPHDLTWPGAIQTINAKDLTMIGNVVAGSEKLGFYFAGTDCDDE-NAHLKVRDNEVHATLHGVHFKK-STKHCWKAEHFLIWKNLDYGIFTWPDKSIVVSNTILADNRVSLALHVARPHALSHDTRDNTITVRNSLIIGQSSNFDCV-----TDQKIPFHASQYMDRRLPRPNKAEMIGIKSSIFSSTPSTGPKMSWEDPMSYPAIKGLTRFDGVTISDFGPTGCNNGAHNYFWMTSPKYGDIFHPMEMEKTVLNNVAEKSKIFHHPMTARWINPADCVDMDCDARRKMIITDLDGSFFGEAMTTLLSRSEFGWDAAPVWGIGNFRIPRTMLTRPDGSRIDANTKYPNKGIIRGTEQGSKCTFIDDWNMYKCQQMFYKMFVIESLDKDTETRRLSPIGIASNGYIDLINGPQDHGWCHGYTCQERVSMFQTVISTNQHYEVHMTSYNPHKTRFMMLNANEEEKIRVEIFYPKSQRLDVYKQGVYIAPTNAFF--EDGKMKFHSKNTGQSFIPEMHEKFSGANFFDLDTKLLYVVIGGSEAIDVRMVPVV----QLRIGTTQSSVNIDDFF-KEQIVNNLAALLGITKDRIRFVDVVASKDGSLRKRRNADDITYIELEISEPAKVNGXXXXXXXXXXXXXXXXXXXLQQITSEVVEKSQTGELASSLNLTLDVISVTEPEPEP 10381
I IQ+ Q SPP++G+F ++ G H + + VS ++ + A + G + V R+GTC+GY+W+I + + G + L+I +S + G + V I++GG+ + G+ L+T +PQV V +N I + C GDC F + +TP + +I+P G E + +TI +G + + V++G V C + + E E+KC+ AG+ PV V++ G A+ GE F Y+ ++S + P SG+ AG + F EN T + V EG L T P + +++T T + F+ + Q IT +P + G V++ IKG N +++ + + G C+I + +IRC LP ++ G+ + V V++ G + SSI L VT+M GSL GG+ I I G GF T P + +V+ G IP N+ S+S++ I S I NNG+ GLGYAWS ++ + GD + W W ++P IG I+ S ++ + K + KS G +++F PG +Y++SG V + L G I V E R + + + ++ +S L FE S +P+I+++ G V ITI G FS N + G + C+ E+S+E +TC +D + V+++V G A + + + + ++ + P GS G T V I G G V + ++ P ++S +YT + E + S ++ + V + Q GN F+Y + +T +T V P GS+ + + G +G+ +D V +G ++ + + + ++ A + L G V V VG G A N T+++ V S+SP+SGSI G +V+ GNGF P NT V +G+ + SI+ ++ C TP+G+ V + V +YP + +TY +P + I P++G G + + GSNF + + + + C+V + + CI+ H GGT + MH K G+A S F Y L++ + Q GGG T+++ G GF+ ++++ +CG I + ++ + L E G ++ C++ + G + + +TY SLT IT + P R T GG + + G F + + IA C ++ T I C T +++ + + + G G + F Y+D WSS +SWGG PP+E +VVI +GQT+LLD TP+L MLLI+GG LIFD DI LQ+++ILI + G LQ+GTE PF+HKA ITLHGH+RS ELPVYGAK+L++R G L LHG + TWTRL+ TA G ++ + + W+ G IVIAST S ENE + I +V +G I PL Y H+ +T T+ G E AE+G+L+RN++++GS + EWN +I ACP FD +FATQTC +G++G+E GSDQFG +M H+ + +VE+ HAGQAFRLGRYPIH+H+ GD+ SYV+GCAIH+++NRAVT+H H+L+VERN+IYDI G A+F+EDGIE GN+++YNLA+FV+ S+S LN D+TPAA+WVTN NNT+ HNA AGG+HFG+WY+M HP+GP++DRNIC + VP+ EF NNT HS G +G+W+F Y PM+ GSC S PA F+SLTTWN +GAE G+++F +F+ ++N AGIE + + WG GA++K++ IVGH + +GS A CT G+ LPFS LTVS+V NFD +CV + C GG + + + ++PN+ F ++H ++D DGSLTGH G ++P LDP+ CT +A S G V + ++ FN P S+ EKD +S G + F+ K + +GW AL+P + + FK NI+Y +DY+++ H F PD F + NG L ++K+GDW + ++ YLVSG+ S L P ++ I Y C + C + P PK RP WS W + ++ +P NV+I W+V DI+ P ++RL ++GVL+ ++ +Y +V+ N IS G+LI G+ D P ++ I L GNH ++D L + N GAK LGVFG L ++G H ++ T+L ++ G +S+ DAVDW+ G+EI+ITT+S+ + E ++ I D L LN +Y H A + + ++A VG+LSRNI+I G ++P S + SFG RVLVG + + + ++G A+++ V+F + GQ G+ +S DPR++++FLNLG I S++ GC+F+ G++ A+GV+GT+ L +++N+I+ TVG+GI + G N++ NL+ SV TY+ K L W AI+ + + NVVAG + G+ G C + N K DNE H L+G++ + C + F IW DYGI+ +S+ + N L DN +++ + P A+SH + +++SLI+G S F+C D I A+ R PR GI F+S + P+ MSY AI GL G T F +G N ++T+P D+ HP+ ++ L + E+SKIF H +NP+DCVDM CDA+RK + D+DGSF G A +++ ++E+ WD GIG++RIP+ MLT +GSRI K P+KGIIR S C ++ +W Y+C M Y M VIESLD DTETRRLSP+ I NGY+DLINGPQDHGWC GYTCQ R+S+F ++++ N+ YEV+ T +P R M+LN + + + V IF+ QRLDVY + + P + + + ++ F+P + G N+FD ++LY+++ G+ +++ V+ QL + T DDF+ +V NLA L I D+IR + + SLR++R+ I IE+EI +P ++ + + + ELQ+I + + G ++S L + +S+T P P P
Sbjct: 922 IHIQRIQAASPPLSGSFDIQAYG-----HILKGLPAAVSAADL----QFALQSLEGMGRISVTREGTCAGYAWNIKWRSTCGKQNLLQINDSNIIGEKANMTVTRIKEGGLFRQHVLGDLLRTPSQQPQVEVYVNGIPAKCSGDCGFTWDSNITPLVLAISPSQGSYEEGTI-LTIVGSG-FSPSSAVTVSVGPVGCSLLSVDEKELKCQILNGSAGHAPVAVSMADVGLAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNENSKVLVGNETCN------------------VIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARDAFSYNCLQTPIITDFSPKV-RTILGEVNLTIKGYNFGNELTQNMAVYVG--GKTCQILHWNFTDIRCLLPKLSP-GKHDIYVEVRNWGFASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGFSTIPAENTVLLGSIPC-NVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWSPPVLNVSVGDTVAWHWQTHPFL-RGIGYRIFSVSSPGSVIYDGKGFTSGRQKSTSGSFSYQFTSPGIHYYSSGYVDEAHSIFLQ--GVINVLPAETRHIPLHLFVGRSEATYAYGGPENLHLGSSVAGCLATEPLCSLNNTRVKNSKRLLFEVSSCFSPSISNITPS------TGTVNELITIIGHGFSNLPWANKVTIGSYPCVVEESSEDSITCHIDPQNSMDVGIRETVTLTVYNLGTAINTLSNEFDRRFVLLPNIDLVLPNAGSTTGMTSVTIKGSGFAVSSAGVKVL----MGHFPCKVLSVNYTAI-----ECETSPAAQQLVDVDLLIHGVPAQCQGNCT---FSYLESITPYITGVFPNS--VIGSV-KVLIEGEGLGTVLEDIAVFIGNQQFRAIEVNENNITALVTPLPVGHHSVSVVVGSKGLALGNLTVSSPPVA------SLSPTSGSIGGGTTLVITGNGFYPGNTTVTIGDEPCQIISINPNEVYCRTPAGTTGMVDVKIFVNTIAYP-PLLFTYALEDTPFLRGIIPSRGPPGTEIEITGSNFGFEILEISVMINNIQCNVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAID----RLRSDYTTLLCEIPSNNGTGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYS-NKTHIICMT-DAHTLSGWAPVCVHIRGVGMAKLDNADFLYVDAWSSNFSWGGKSPPEEGSLVVITKGQTILLDQSTPILKMLLIQGGTLIFDEADIELQAENILITDGGVLQIGTETSPFQHKAVITLHGHLRSPELPVYGAKTLAVREGILDLHGVPVPVTWTRLAHTAKAGE-RILILQEAVTWKPGDNIVIASTGHRHSQGENEKMTIASVSADGINITLSNPLNYTHLGITVTLPDGTLFEARAEVGILTRNILIRGSDNVEWNNKIPACPDGFDTGEFATQTCLQGKFGEEIGSDQFGGCVMFHAPVPGANMVTGRIEYVEVFHAGQAFRLGRYPIHWHLLGDLQFKSYVRGCAIHQAYNRAVTIHNTHHLLVERNIIYDIKGGAFFIEDGIEHGNILQYNLAVFVQQSTSLLNDDVTPAAFWVTNPNNTIRHNAVAGGTHFGFWYRMNNHPDGPSYDRNICQKRVPLGEFFNNTVHSQGWFGMWIFEEYFPMQTGSCTSTVPAPAIFNSLTTWNCQKGAEWVNGGALQFHNFVMVNNYEAGIETKRILAPYVGGWGETNGAVIKNAKIVGHLDELGMGS--------AFCTAKGLVLPFSEGLTVSSVHFMNFDRPNCVALGVTSISGVCNDRCGGWSAKFVDVQYSHTPNKAGFRWEHEMVMIDVDGSLTGHKGHTVIPHSSLLDPSHCTQEAEWSIGFPGSVCDASVSFHRLAFNQPSPVSLLEKDVVLSDSFGTSIIPFQKKRLTHMSGWMALIPNANHINWYFKGVDHITNISYTSTFYGFKEEDYVIISHNFTQNPDMFNIIDMRNGSSNPLN----WNTSKNGDWHLEANTSTLYYLVSGRNDLHQSQLISGNLDPDVKDVVINFQAYCCILQDCFPVHPPSRKPIPKKRPATYNLWSNDSFWQSSRE----NNYTVPHPGANVIIPEGTWIVADIDMPS-MERLIIWGVLELEDKYNVGAAESSYREVV-LNATYISLQGGRLIGGWEDNPFKGDLKIVLRGNHTTQDWALPEGPNQGAKVLGVFGELDLHGIPHSIYKTKLSETAFAGSKVLSLMDAVDWQEGEEIVITTTSYDFHQTETRSIVKILHDHKILILNDSLSYTHFAEKYHVPGTGESYTLAADVGILSRNIKIVGEDYPGWS--EDSFGARVLVGSFT-ENMMTFKGNARISNVEFYHSGQEGFRDSTDPRYAVTFLNLGQIQEHGSSYIRGCAFHHGFSPAIGVFGTDGLDIDDNIIHFTVGEGIRIWGNANRVRGNLIALSVWPGTYQNRKDLSSTL-WHAAIEINRGTNTVLQNNVVAGFGRAGYRIDGEPCPGQFNPVEKWFDNEAHGGLYGIYMNQDGLPGCSLIQGFTIWTCWDYGIYFQTTESVHIYNVTLVDNGMAIFPMIYMPAAISHKISSKNVQIKSSLIVGSSPGFNCSDVLTNDDPNIELTAAH----RSPRSPSGGRSGICWPTFASAHNMAPRKPHAGIMSYNAISGLLDISGSTFVGF--KNVCSGETNVIFITNPLNEDLQHPIHVKNIKLVDTTEQSKIFIHRPDISKVNPSDCVDMVCDAKRKSFLRDIDGSFLGNA-GSVIPQAEYEWDGNSQVGIGDYRIPKAMLTFLNGSRIPVTEKAPHKGIIR----DSTCKYLPEWQSYQCFGMEYAMMVIESLDPDTETRRLSPVAIMGNGYVDLINGPQDHGWCAGYTCQRRLSLFHSIVALNKSYEVYFTGTSPQNLRLMLLNVDHNKAVLVGIFFSTLQRLDVYVNNLLVCPKTTIWNAQQKHCELNNHLYKDQFLPNLDSTVLGENYFDGTYQMLYLLVKGTIPVEIHTATVIFVSFQLSVATE------DDFYTSHNLVKNLALFLKIPSDKIRISKI---RGKSLRRKRSMGFI--IEIEIGDPP-------IQFISNGTTGQMQLSELQEIAGSLGQAVILGNISSILGFNISSMSITNPLPSP 4054 The following BLAST results are available for this feature:
BLAST of TCONS_00065954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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