TCONS_00065953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065953
Unique NameTCONS_00065953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065953 ID=TCONS_00065953|Name=TCONS_00065953|organism=Clytia hemisphaerica|type=transcript|length=2001bp
agcttggtaacattcaaatttggaatcagcaccctcaaattgagtaagaa
atatatcaaaaagttggtcccagacattttgaattttttctttatttttg
aaacaataacaatccaCTGGCCACGGTCTACTTCTCAAATTTCTCGATAT
CCATGGAGtcagaaaatttcaccatcttaAAATTTTTGGTCTTCAACAAA
ACTTTGCGGCATGAGGCATGAGAAAGaggttctcaacttcagttgagcta
gaatctgagaatgtctgtctgtctgtctgtgtctgtctgtctgtctgtct
gtcacaaaaactttggggcaggctggagacttcaaaaatggtccgatttg
gctgaaattttgcacacttgatccttgggtgaatccctgggggtgttttt
ttcattttttcaaaattcagaaaatttcaccatcttaAATTTTGGTCTTC
CAAAAAACTTTGCGGCATGAGGCTTGAGAAAGAGGTTATTTATAGGTCCA
GCCTAAAATAAACTCTATGATATTTCTTAGCATCATCAAACTGTGACAAG
TATTGATTGGGCTCCTAAGAGCAACCGAATTGTTACTTGTGGTGCTGATC
GTAATGCCTATGTGTGGGTTGATGAAGGCGGCAAGTGGAAACCAACCCTT
GTATTGCTTCGAATCAATCGTGCTGCTACCTCAGTCAGATGGTCACCAAA
CGAGGATAAATTTGCAGTTGGAAGCAGTGCAAGATTAATTTCAATCTGTT
ATTACGAGAAAGAAAACAAATGGTGGGTCagtaaacatatcaaaaagccA
ATCCGTTCAACTGTCCTTTCACTCTCCTGGCATCCCAACAATGTCCTATT
GGCAGCCGGCTCCTCTGACTTCAAAATGCGAGTTTTCTCTGCATACATCA
AGGAGATTGAATCCAAACCGGAGTCAACAAACTGGGGCAAGAAAATGCCT
TTTGGAAATATGATGGGCGAATGGAGCAATGGAAGAGGTGGATGGGTGCA
CGATGTTGCATTCTCTCCTTCTGGAGCCAAAGTTGGATGGGTTGGACATG
ATTCAAGTATCTCCGTTGTCCAAGGAGGTGAAACTGAACCTGTTGTTTTG
CCATTGAACAACTTGCCATTTGTCACATGTTTGTTCATCTCTGAGAGTGC
ATTAGTAGCTGCTGGACATGACTACGTGCCCATGACTTTCTCCCATGACG
ATAACAACAAATTGACCTTTATGGCTAAACTTGATCAACCAGCCCAGAAG
TCTGGAGATGAAGAAGAAACCATGTCAGCAATGCAGCGTTTCCGATCGCT
TGATAAGAGAGCTACCACAGGCTCAAAACCAGGGAAATCTTCTACCACTC
ATAACAACATGATCAAGCAATTGTCAGTTTATGCTTCAGATGGAAGCGGT
ATTTCCCAGATTTCTTCTGGTGGTATGGATGGAAAGATTGTACTCTGGAA
CTTAAAGacTTTGGAGAAATCAATTGCCGATTTGAAGATTTAAAGAAACA
CCATCACGTAAAACGAATTCGTCCGACAAAATGGCCCGAAATCGTTCGAA
CTGGGTAGTATATAGAATAAAATAGTTCATTCAtcattttctaatatttt
ttttctaattcctATCTATCATTCTAATTATCTTCTTGTAATTTTTACAT
CTCATAGAAATAAATAGAATatcctttgaaaataaaatcttctgttgaat
ttttttttatcgtaatcaaattaacaaaattggtAGTTTATTATGTAATA
ATGAGGTTAAATCGGTATAATAACGACGATGGACGGAACGTGCAATATGA
TAATGAGtgttttaagggctctgaccatggtgaatttttcatatttgcca
TTTACAAAGTATagatttctgcctgatgtaaccaacaaaactatggcatg
ttatacattttctgttaggttAACCAttcctgaatctaaaaattttaaaa
tcacaatgaaaaagtttgatgaagagaaaaatgaagatttttgcgaAGGA
G
Run BLAST on NCBI

protein sequence of TCONS_00065953-protein

>TCONS_00065953-protein ID=TCONS_00065953-protein|Name=TCONS_00065953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MRVFSAYIKEIESKPESTNWGKKMPFGNMMGEWSNGRGGWVHDVAFSPSG
AKVGWVGHDSSISVVQGGETEPVVLPLNNLPFVTCLFISESALVAAGHDY
VPMTFSHDDNNKLTFMAKLDQPAQKSGDEEETMSAMQRFRSLDKRATTGS
KPGKSSTTHNNMIKQLSVYASDGSGISQISSGGMDGKIVLWNLKTLEKSI
ADLKI
Run BLAST on NCBI

transcript from alignment at scaffold_448:360244..364581-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065953 ID=TCONS_00065953|Name=TCONS_00065953|organism=Clytia hemisphaerica|type=transcript|length=4338bp|location=Sequence derived from alignment at scaffold_448:360244..364581- (Clytia hemisphaerica)
AGCTTGGTAACATTCAAATTTGGAATCAGCACCCTCAAATTGAGTAAGAA
ATATATCAAAAAGTTGGTCCCAGACATTTTGAATTTTTTCTTTATTTTTG
AAACAATAACAATCCACTGGCCACGGTCTACTTCTCAAATTTCTCGATAT
CCATGGAGTCAGAAAATTTCACCATCTTAAAATTTTTGGTCTTCAACAAA
ACTTTGCGGCATGAGGCATGAGAAAGAGGTTCTCAACTTCAGTTGAGCTA
GAATCTGAGAATGTCTGTCTGTCTGTCTGTGTCTGTCTGTCTGTCTGTCT
GTCACAAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGATTTG
GCTGAAATTTTGCACACTTGATCCTTGGGTGAATCCCTGGGGGTGTTTTT
TTCATTTTTTCAAAATTCAGAAAATTTCACCATCTTAAATTTTGGTCTTC
CAAAAAACTTTGCGGCATGAGGCTTGAGAAAGAGGTTATTTATAGGTCCA
GCCTAAAATAAACTCTATGATATTTCTTAGCATCATCAAACTGTGACAAG
TATTGATTGGGCTCCTAAGAGCAACCGAATTGTTACTTGTGGTGCTGATC
GTAATGCCTATGTGTGGGTTGATGAAGGCGGCAAGTGGAAACCAACCCTT
GTATTGCTTCGAATCAATCGTGCTGCTACCTCAGTCAGATGGTCACCAAA
CGGTCAGTTAATTTGTTATATATTCTTTTCCTTTGAGACTGTATAAGAGA
ATATTTTGATATTACTATTTGAAAGTTATGTAGGTAATCAAGCTCCAATT
TCAAGTGAAACTTGTGATATATTATAATGACTTTGAAAATTGATTGAATG
CTTGGATGCTTTTTTCTGGCTTTGATATGAATTGAAAAAAAGTCATTGTA
GTGTATGGAGATTCATCATTTTTTAATTCATCTTTACAGAGGATAAATTT
GCAGTTGGAAGCAGTGCAAGATTAATTTCAATCTGTTATTACGAGAAAGA
AAACAAATGGTAATTATGTCCTGCTTTACTTTGGTGTCTGGATGAATATT
TATTTGACTAATCATAGTTTGACCTTAGTGCTTTTGAAACTATAATTCTA
AAATATGAAGTTTCGTTGGGTGCTGTTGTGACACACACAAAAAGCCTATT
GTTGTTTGAAAATTAACCAGCCATTATAAATCCTTTCTTTCTGCTTCCAG
GTGGGTCAGTAAACATATCAAAAAGCCAATCCGTTCAACTGTCCTTTCAC
TCTCCTGGCATCCCAACAATGTCCTATTGGCAGCCGGCTCCTCTGACTTC
AAAATGCGAGTTTTCTCTGCATACATCAAGGAGATTGAATCCAAACCGGA
GTCAACAAACTGGGGCAAGAAAATGCCTTTTGGAAATATGATGGGCGAAT
GGAGCAATGGAAGAGGTAAAGTTCATGACCAAAACATCAACTTAAAAATG
AAGATAAGCTTCAGTCAAAATTATCTCATAAAGGCATGTTTTTATCCTCC
CTCTTTTTGAATAAAGCAGTAATTGTAACAAGCCCAAAATCTGCCTTGTT
GAGACTTCAACTCCCCAACAGACCCCTCGTTTGTCAAAATAGTATTTCCA
TTCTGTTTATGAACATTGACAGTCAAATTTTTCTCAAAATTCAGTAAAAG
TTAGTTCAATGTTTCTCTCCCATGAATAGGTGGATGGGTGCACGATGTTG
CATTCTCTCCTTCTGGAGCCAAAGTTGGATGGGTTGGACATGATTCAAGT
ATCTCCGTTGTCCAAGGTACAAAACAAATAAATTGTAATAAAATAGTTAC
TTCTTATTGTCCTAACCTCAATCTCAATTAAAGGAAGTTACGTTTACACA
AAAAAGGGAGGCTTTCTCTACTCTCTCAATTGGTACTCCCGCATTGCAAA
TTCTTTCGTTAATTCTGCTTTTTCAGCAGAAGTTTTACAACAGCCTTTGA
GTATAATCATTTCTCTTGAAGTCCTATCATCATCTTGGTTAACTTCTTGC
CTTTGATTTTAATAAGTCTCAAAAGTATTGTATTATCTTTCAAATTGTTT
TTCTCTAGGAGGTGAAACTGAACCTGTTGTTTTGCCATTGAACAACTTGC
CATTTGTCACATGTTTGTTCATCTCTGAGAGTGCATTAGTAGCTGCTGGA
CATGACTACGTGCCCATGACTTTCTCCCATGACGATAACAACAAATTGAC
CTTTATGGCTAAACTTGATCAACCAGCCCAGAAGTCTGGAGATGAAGAAG
AAACCATGTCAGCAATGCAGCGTTTCCGATCGCTTGATAAGAGAGCTACC
ACAGGCTCAAAACCAGGGAAATCTTCTACCACTCATAACAACATGATCAA
GTACGTAGAGTTTTGGTCTTATGGACACTTCTGTTATGTGAACGTGCATG
TGAATTTAATGCTCAAAAAACCTAAAAAGATGCTTTTAAAGTCAAAACGT
TTAGTTGATTTGCTTATGAATAGCTAATACTTTCCCTCTGCCGATTTCCC
GAGTGTTAAATTTTATACCAGCAACAAACCTGAAGCTCAAGCACCATACA
ACTTGATTTTTAAAGAACAAGAAAGCTGCTGTAGATAACAATACTAATGT
GATTAATCAAAGAATAACTTTTTTAAATACCCTTATCGGGGCATAAAAAT
ATTGAAATAAAAGTGGGACCTATTCAAAGTAAAATCATTATCTCATATTT
TACTTTCCATAGAGCAAATAATTTTTACCAACGAATATTCTTTTCTCTAT
TCCAGGCAATTGTCAGTTTATGCTTCAGATGGAAGCGGTATTTCCCAGAT
TTCTTCTGGTGGTATGGATGGAAAGATTGTACTCTGGAACTTAAAGGTGA
GTTATTTAAATGTATTTGTATCTTGAATCAAAAGGGGCAATAAGATGGCT
TAAATTTTTGAAAATCTCCTCTCATTAATTATTTTTATTGTTTTCCATCA
AAAGTCTTAAAGGAATTTCGAGACTGAAATTTTCTGAAAAAATAAGGAAT
ATCCGGGCTTTGAGCTGAGATAAGATTCTTATAAAAAGAAAACGTGTATA
TCATAATAAAAATAAATCTTCCTTCAAAAATACAGGAAATGAATTTTCTC
TAAATACACAAGAATATTTTCCTTTGAATAGAAATATTTTGGGAAATTGC
ATCTGAACAGGACAAATAGTAAATCACTAAGGGTCAGTGACTCTCACTAT
ACAAGGAATTTCTAGACTGAAATTCTTTGAAAAATAAGGAATATTCAGGC
TTTGAGCTAAGTTAAGCTTCTTATAAAAAGAAAACGTGCGTATCATAAAA
AACCCATTTTCCTTCAAAAATACATGAAATGAATTTTCTCTAAATACACA
AGAATATTTTCCTTTGAATAGAAATATTTTGGGAAATTGCATCTGAACAG
GACAAATAGTAAATCACTAAGGGTCAGTGACTCTCACTATACAAGGAATT
TCTAGACTGAAATTCTTTGAAAAATAAGGAATATTCAGGCTTTGAGCTAA
GTTAAGCTTCTTATAAAAAGAAAACGTGCGTATCATAAAAAACCCATTTT
CCTTCAAAAATACAGGAAATGAATTTTCTCTAAATACACAAGAATATTTT
CCTTTGAATAGAAATATTTTGGGAAATTGCATCTGAACAGGACAAATAGT
AAATCACTAAGGGTCAGTGACTCTAACTATACATTTCATTTTTCGGAATC
GGATTCGAATAACGTGCAGATGCAAATGGAAGGATGATGTCCATTAAGAT
ACAATAGATAAATAATATCAAACGCTTCAATTTTATTTTTGTAGACTTTG
GAGAAATCAATTGCCGATTTGAAGATTTAAAGAAACACCATCACGTAAAA
CGAATTCGTCCGACAAAATGGCCCGAAATCGTTCGAACTGGGTAGTATAT
AGAATAAAATAGTTCATTCATCATTTTCTAATATTTTTTTTCTAATTCCT
ATCTATCATTCTAATTATCTTCTTGTAATTTTTACATCTCATAGAAATAA
ATAGAATATCCTTTGAAAATAAAATCTTCTGTTGAATTTTTTTTTATCGT
AATCAAATTAACAAAATTGGTAGTTTATTATGTAATAATGAGGTTAAATC
GGTATAATAACGACGATGGACGGAACGTGCAATATGATAATGAGTGTTTT
AAGGGCTCTGACCATGGTGAATTTTTCATATTTGCCATTTACAAAGTATA
GATTTCTGCCTGATGTAACCAACAAAACTATGGCATGTTATACATTTTCT
GTTAGGTTAACCATTCCTGAATCTAAAAATTTTAAAATCACAATGAAAAA
GTTTGATGAAGAGAAAAATGAAGATTTTTGCGAAGGAG

Coding sequence (CDS) from alignment at scaffold_448:360244..364581-

>TCONS_00065953 ID=TCONS_00065953|Name=TCONS_00065953|organism=Clytia hemisphaerica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_448:360244..364581- (Clytia hemisphaerica)
ACTTTGGAGAAATCAATTGCCGATTTGAAGATTTAAGCAATTGTCAGTTT
ATGCTTCAGATGGAAGCGGTATTTCCCAGATTTCTTCTGGTGGTATGGAT
GGAAAGATTGTACTCTGGAACTTAAAGGAGGTGAAACTGAACCTGTTGTT
TTGCCATTGAACAACTTGCCATTTGTCACATGTTTGTTCATCTCTGAGAG
TGCATTAGTAGCTGCTGGACATGACTACGTGCCCATGACTTTCTCCCATG
ACGATAACAACAAATTGACCTTTATGGCTAAACTTGATCAACCAGCCCAG
AAGTCTGGAGATGAAGAAGAAACCATGTCAGCAATGCAGCGTTTCCGATC
GCTTGATAAGAGAGCTACCACAGGCTCAAAACCAGGGAAATCTTCTACCA
CTCATAACAACATGATCAAGTGGATGGGTGCACGATGTTGCATTCTCTCC
TTCTGGAGCCAAAGTTGGATGGGTTGGACATGATTCAAGTATCTCCGTTG
TCCAAGATGCGAGTTTTCTCTGCATACATCAAGGAGATTGAATCCAAACC
GGAGTCAACAAACTGGGGCAAGAAAATGCCTTTTGGAAATATGATGGGCG
AATGGAGCAATGGAAGAGACTTTGGAGAAATCAATTGCCGATTTGAAGAT
TTAAGCAATTGTCAGTTTATGCTTCAGATGGAAGCGGTATTTCCCAGATT
TCTTCTGGTGGTATGGATGGAAAGATTGTACTCTGGAACTTAAAGGAGGT
GAAACTGAACCTGTTGTTTTGCCATTGAACAACTTGCCATTTGTCACATG
TTTGTTCATCTCTGAGAGTGCATTAGTAGCTGCTGGACATGACTACGTGC
CCATGACTTTCTCCCATGACGATAACAACAAATTGACCTTTATGGCTAAA
CTTGATCAACCAGCCCAGAAGTCTGGAGATGAAGAAGAAACCATGTCAGC
AATGCAGCGTTTCCGATCGCTTGATAAGAGAGCTACCACAGGCTCAAAAC
CAGGGAAATCTTCTACCACTCATAACAACATGATCAAGTGGATGGGTGCA
CGATGTTGCATTCTCTCCTTCTGGAGCCAAAGTTGGATGGGTTGGACATG
ATTCAAGTATCTCCGTTGTCCAAGATGCGAGTTTTCTCTGCATACATCAA
GGAGATTGAATCCAAACCGGAGTCAACAAACTGGGGCAAGAAAATGCCTT
TTGGAAATATGATGGGCGAATGGAGCAATGGAAGAGACTTTGGAGAAATC
AATTGCCGATTTGAAGATTTAAGCAATTGTCAGTTTATGCTTCAGATGGA
AGCGGTATTTCCCAGATTTCTTCTGGTGGTATGGATGGAAAGATTGTACT
CTGGAACTTAAAGGAGGTGAAACTGAACCTGTTGTTTTGCCATTGAACAA
CTTGCCATTTGTCACATGTTTGTTCATCTCTGAGAGTGCATTAGTAGCTG
CTGGACATGACTACGTGCCCATGACTTTCTCCCATGACGATAACAACAAA
TTGACCTTTATGGCTAAACTTGATCAACCAGCCCAGAAGTCTGGAGATGA
AGAAGAAACCATGTCAGCAATGCAGCGTTTCCGATCGCTTGATAAGAGAG
CTACCACAGGCTCAAAACCAGGGAAATCTTCTACCACTCATAACAACATG
ATCAAGTGGATGGGTGCACGATGTTGCATTCTCTCCTTCTGGAGCCAAAG
TTGGATGGGTTGGACATGATTCAAGTATCTCCGTTGTCCAAGATGCGAGT
TTTCTCTGCATACATCAAGGAGATTGAATCCAAACCGGAGTCAACAAACT
GGGGCAAGAAAATGCCTTTTGGAAATATGATGGGCGAATGGAGCAATGGA
AGAGACTTTGGAGAAATCAATTGCCGATTTGAAGATTTAAGCAATTGTCA
GTTTATGCTTCAGATGGAAGCGGTATTTCCCAGATTTCTTCTGGTGGTAT
GGATGGAAAGATTGTACTCTGGAACTTAAAGGAGGTGAAACTGAACCTGT
TGTTTTGCCATTGAACAACTTGCCATTTGTCACATGTTTGTTCATCTCTG
AGAGTGCATTAGTAGCTGCTGGACATGACTACGTGCCCATGACTTTCTCC
CATGACGATAACAACAAATTGACCTTTATGGCTAAACTTGATCAACCAGC
CCAGAAGTCTGGAGATGAAGAAGAAACCATGTCAGCAATGCAGCGTTTCC
GATCGCTTGATAAGAGAGCTACCACAGGCTCAAAACCAGGGAAATCTTCT
ACCACTCATAACAACATGATCAAGTGGATGGGTGCACGATGTTGCATTCT
CTCCTTCTGGAGCCAAAGTTGGATGGGTTGGACATGATTCAAGTATCTCC
GTTGTCCAAGATGCGAGTTTTCTCTGCATACATCAAGGAGATTGAATCCA
AACCGGAGTCAACAAACTGGGGCAAGAAAATGCCTTTTGGAAATATGATG
GGCGAATGGAGCAATGGAAGAGACTTTGGAGAAATCAATTGCCGATTTGA
AGATTTAAGCAATTGTCAGTTTATGCTTCAGATGGAAGCGGTATTTCCCA
GATTTCTTCTGGTGGTATGGATGGAAAGATTGTACTCTGGAACTTAAAGG
AGGTGAAACTGAACCTGTTGTTTTGCCATTGAACAACTTGCCATTTGTCA
CATGTTTGTTCATCTCTGAGAGTGCATTAGTAGCTGCTGGACATGACTAC
GTGCCCATGACTTTCTCCCATGACGATAACAACAAATTGACCTTTATGGC
TAAACTTGATCAACCAGCCCAGAAGTCTGGAGATGAAGAAGAAACCATGT
CAGCAATGCAGCGTTTCCGATCGCTTGATAAGAGAGCTACCACAGGCTCA
AAACCAGGGAAATCTTCTACCACTCATAACAACATGATCAAGTGGATGGG
TGCACGATGTTGCATTCTCTCCTTCTGGAGCCAAAGTTGGATGGGTTGGA
CATGATTCAAGTATCTCCGTTGTCCAAGATGCGAGTTTTCTCTGCATACA
TCAAGGAGATTGAATCCAAACCGGAGTCAACAAACTGGGGCAAGAAAATG
CCTTTTGGAAATATGATGGGCGAATGGAGCAATGGAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041318XLOC_041318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065953-exon-scaffold_448-1575043694:363880..364581TCONS_00065953-exon-scaffold_448-1575043694:363880..364581Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:363573..363642TCONS_00065953-exon-scaffold_448-1575043694:363573..363642Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:363167..363381TCONS_00065953-exon-scaffold_448-1575043694:363167..363381Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:362816..362902TCONS_00065953-exon-scaffold_448-1575043694:362816..362902Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:362232..362523TCONS_00065953-exon-scaffold_448-1575043694:362232..362523Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:361736..361826TCONS_00065953-exon-scaffold_448-1575043694:361736..361826Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1575043694:360244..360787TCONS_00065953-exon-scaffold_448-1575043694:360244..360787Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:363880..364581TCONS_00065953-exon-scaffold_448-1510915933:363880..364581Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:363573..363642TCONS_00065953-exon-scaffold_448-1510915933:363573..363642Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:363167..363381TCONS_00065953-exon-scaffold_448-1510915933:363167..363381Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:362816..362902TCONS_00065953-exon-scaffold_448-1510915933:362816..362902Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:362232..362523TCONS_00065953-exon-scaffold_448-1510915933:362232..362523Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:361736..361826TCONS_00065953-exon-scaffold_448-1510915933:361736..361826Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1510915933:360244..360787TCONS_00065953-exon-scaffold_448-1510915933:360244..360787Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:363880..364581TCONS_00065953-exon-scaffold_448-1491911889:363880..364581Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:363573..363642TCONS_00065953-exon-scaffold_448-1491911889:363573..363642Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:363167..363381TCONS_00065953-exon-scaffold_448-1491911889:363167..363381Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:362816..362902TCONS_00065953-exon-scaffold_448-1491911889:362816..362902Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:362232..362523TCONS_00065953-exon-scaffold_448-1491911889:362232..362523Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:361736..361826TCONS_00065953-exon-scaffold_448-1491911889:361736..361826Clytia hemisphaericaexon
TCONS_00065953-exon-scaffold_448-1491911889:360244..360787TCONS_00065953-exon-scaffold_448-1491911889:360244..360787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065953-proteinTCONS_00065953-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:360244..364581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
414.823	436.596	528.382	525.696	278.186	223.3	328.613	349.108	379.681	406.032	246.292	224.071	187.357	170.055	220.485	267.224	285.284	272.437	181.642	212.311	301.236	303.738	233.474	230.258	188.595	208.51	301.48	254.329	360.06	299.088
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00065953 vs. Swiss-Prot (Human)
Match: ARC1A (Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=2 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 4.857e-124
Identity = 192/329 (58.36%), Postives = 241/329 (73.25%), Query Frame = 3 
Query:  510 KLYDIS*HHQTVTSIDWAPKSNRIVTCGADRNAYVWVDEGGKWKPTLVLLRINRAATSVRWSPNEDKFAVGSSARLISICYYEKENKWWVSKHIKKPIRSTVLSLSWHPNNVLLAAGSSDFKMRVFSAYIKEIESKPESTNWGKKMPFGNMMGEW-SNGRGGWVHDVAFSPSGAKVGWVGHDSSISVVQGGETEPV-VLPLNNLPFVTCLFISESALVAAGHDYVPMTFSHDDNNKLTFMAKLDQPAQKSGDEEETMSAMQRFRSLDKRAXXXXXXXXXXXXHNNMIKQLSVYAXXXXXXXXXXXXXXXXKIVLWNLKTLEKSIADLKI 1490
            K +++  H+  +T IDWAPKS+RIVTCGADRNAYVW  + G WKPTLV+LRINRAAT V+WSP E+KFAVGS ARLIS+CY+E EN WWVSKHIKKPIRSTVLSL WHPNNVLLAAGS DFK RVFSAYIKE++ KP ST WG KMPFG +M E+  +G GGWVH V+FS SG+++ WV HDS++SV    ++  V  L    LP ++  F+SE+++VAAGHD  PM F++DD   LTF++KLD P Q     +  MSAM+RFR++DKRATT  +     T H N I Q+S+Y  D     +  + G+DG + +W+ KTLE SI  L+I
Sbjct:   44 KAHELKEHNGHITGIDWAPKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSI---QRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 369
The following BLAST results are available for this feature:
BLAST of TCONS_00065953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARC1A4.857e-12458.36Actin-related protein 2/3 complex subunit 1A OS=Ho... [more]
back to top