TCONS_00065941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065941
Unique NameTCONS_00065941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065941 ID=TCONS_00065941|Name=TCONS_00065941|organism=Clytia hemisphaerica|type=transcript|length=625bp
CGATCAGTCTTGGTTATTTACCAAACGAAGCGCAAACGAAATTCCAACAC
TCCACGGACCCTGTTGTTGACCTCTTTTTGGACTACACCTCAAATCGTCA
TGGAAACCGTATTGAGTTCTTTGATTCTATGGCAACTGTTGCTGGCTTCT
TTAAACTTCAAAATGGTAGCGAAGTAATGGAGAGCCAGCATTTAAATACC
GGTATTCAAAAACAGACTAAACGAACTTTCGACCAAGCATTTTTAAAAGA
CACACGTCCTATAGAAGAAAATGAACTAGACGATATTGCAGAACAGATAT
CTCGATCATGGCGTCACGTCGGTCGAAAACTAAACATTACGGAATCATCA
TTAAATGAGATAGACTTACGGACAGGACAGAATACGGAACGAGAGAAAGC
CTTTCAAATGCTTTTAGAATGGCGTGAAAGGTTTCCGGATGATTTTAACA
GGGGTTCTCACGTGATTCGTTTCCAAGCCTCACAGGTTGTCATGACGACT
ACCTAACATTAAAACCCTTTTGTAGAGAATATTTTGTATATaaaatgtta
atatttttgtgacTGTATTTAGAGGGCCTTTATGACAGGCATTAAAACTA
CTTGAAAATCCCTGTTGGAGGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00065941-protein

>TCONS_00065941-protein ID=TCONS_00065941-protein|Name=TCONS_00065941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
ISLGYLPNEAQTKFQHSTDPVVDLFLDYTSNRHGNRIEFFDSMATVAGFF
KLQNGSEVMESQHLNTGIQKQTKRTFDQAFLKDTRPIEENELDDIAEQIS
RSWRHVGRKLNITESSLNEIDLRTGQNTEREKAFQMLLEWRERFPDDFNR
GSHVIRFQASQVVMTTT
Run BLAST on NCBI

transcript from alignment at scaffold_448:176641..178496-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065941 ID=TCONS_00065941|Name=TCONS_00065941|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_448:176641..178496- (Clytia hemisphaerica)
CGATCAGTCTTGGTTATTTACCAAACGAAGCGCAAACGAAATTCCAACAC
TCCACGGACCCTGTTGTTGACCTCTTTTTGGACTACACCTCAAATCGTCA
TGGAAACCGTATTGAGTTCTTTGATTCTATGGCAACTGTTGCTGGCTTCT
TTAAACTTCAAAATGGTAGCGAAGTAATGGAGAGCCAGCATTTAAATACC
GGTATGAAATGAGGGAGAGGTTGTTCCGGTGTATTCTTTTGTCTTATCAA
CTGACTGCTTTTAAATTTTTATATTTAAGTTTCCTCCATCAAAATATACT
TTTATGGTATTCACGACGTAATGTATTATACGGAAGCCCGGTCGTTTTTA
AGTGCTTCCGTATCAAACATTACGTCACAAATTAGTAAGTCATGTGATTA
AAATCGCGAGAGGTTGCGTTCTATCCATTGTTACTTTTTAGGTATTCAAA
AACAGACTAAACGAACTTTCGACCAAGCATTTTTAAAAGACACACGTCCT
ATAGAAGAAAATGAACTAGACGATATTGCAGAACAGATATCTCGATCATG
GCGTCACGTCGGTCGAAAACTAAACATTACGGAATCATCATTAAATGAGA
TAGACTTACGGACAGGACAGAATACGGAACGAGAGAAAGCCTTTCAAATG
CTTTTAGAATGGCGTGAAAGGTTTCCGGATGATTTTAACAGGGGTAGGTT
GTTTACCGTTTTAGATTTATGTAATTTGAAATATACTGCTAAGCGTTTTT
TGAGGTGACTGGTGCATCTTGTACCTTATCGGCCAAAACTTGTCGGCCCT
AAGTGACTAAATTTTGGCCTGGTGACTAAAATTAGGGCCGACTGAAAATT
TGGGCCGACTAAAATTTCAGAAATAGCCAAAACTTGATTATAAGTCGGAC
CTTAGTGACTAAATTTTGACGAGATGACTAAAATTAGGGCCGAATAATAA
TTAAGGTTGACTAAAATTAAGCCGACTAAGTTTTGGCCGATAAGGTAGTT
TAAGTTCTCAGTTCGATCAAAATTAAAGGTTTTGTTTTTAGACAAGAGTC
ATTTGCTTGCTTGCTTCATCATTTTAATTTACCTACAGAGAAATGTCTCT
TATGCTAAAACCTTAAAGTTGAAACACTGCTCTCAGTTTTAAGTTTTGAA
ATATACAAGGCCAGATTATCTTCTTTTATCACTACTCGATTCTTACAATC
TTCAATGTTAGCTAATCAATTATCATATTCCATTAATTACACTTAGCTAG
TGACGGTTCTGCAGTAGTAAGGAAAGGTAATTTTGTATACACTTTTGGTT
TTGAAGAACGGCTGGTCTGATGTTTCAACTTTTATACATTTGTGTGTGAA
CTTTTTAAAGAAGGTTTCTGGACTTATCAAGCGAGTTTTTATTCAATTAG
TTCGGCACTCTTAGATACGTCAAGTATATTGGTAGTATTTTGGGCAGTAT
ATTTTGGATGTATCTCCTGCAACAGCATTTATAGCTTTACTTTCAGTATT
TTTTCGTATTTGGGTCGCGGCTGGTCCGTAACCGAGATTTCAAATCTCAA
AGAAAAAGCTTTTTATTTTCTTCGATCTTGTTGATCTAGACTATGCTATA
TAATGTAACTGCAGAAAGATACACAAATTACATTTTATAGAAAAATTTTA
ATTAATTTGTATATATTTTTATCTGGTTTTACAGGTTCTCACGTGATTCG
TTTCCAAGCCTCACAGGTTGTCATGACGACTACCTAACATTAAAACCCTT
TTGTAGAGAATATTTTGTATATAAAATGTTAATATTTTTGTGACTGTATT
TAGAGGGCCTTTATGACAGGCATTAAAACTACTTGAAAATCCCTGTTGGA
GGAAGG

Coding sequence (CDS) from alignment at scaffold_448:176641..178496-

>TCONS_00065941 ID=TCONS_00065941|Name=TCONS_00065941|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_448:176641..178496- (Clytia hemisphaerica)
GTTCTCACGTGATTCGTTTCCAAGCCTCACAGGTTGTCATGACGACTACC
TAAGTATTCAAAAACAGACTAAACGAACTTTCGACCAAGCATTTTTAAAA
GACACACGTCCTATAGAAGAAAATGAACTAGACGATATTGCAGAACAGAT
ATCTCGATCATGGCGTCACGTCGGTCGAAAACTAAACATTACGGAATCAT
CATTAAATGAGATAGACTTACGGACAGGACAGAATACGGAACGAGAGAAA
GCCTTTCAAATGCTTTTAGAATGGCGTGAAAGGTTTCCGGATGATTTTAA
CAGGGATCAGTCTTGGTTATTTACCAAACGAAGCGCAAACGAAATTCCAA
CACTCCACGGACCCTGTTGTTGACCTCTTTTTGGACTACACCTCAAATCG
TCATGGAAACCGTATTGAGTTCTTTGATTCTATGGCAACTGTTGCTGGCT
TCTTTAAACTTCAAAATGGTAGCGAAGTAATGGAGAGCCAGCATTTAAAT
ACCGGTTCTCACGTGATTCGTTTCCAAGCCTCACAGGTTGTCATGACGAC
TACCTAAGTATTCAAAAACAGACTAAACGAACTTTCGACCAAGCATTTTT
AAAAGACACACGTCCTATAGAAGAAAATGAACTAGACGATATTGCAGAAC
AGATATCTCGATCATGGCGTCACGTCGGTCGAAAACTAAACATTACGGAA
TCATCATTAAATGAGATAGACTTACGGACAGGACAGAATACGGAACGAGA
GAAAGCCTTTCAAATGCTTTTAGAATGGCGTGAAAGGTTTCCGGATGATT
TTAACAGGGATCAGTCTTGGTTATTTACCAAACGAAGCGCAAACGAAATT
CCAACACTCCACGGACCCTGTTGTTGACCTCTTTTTGGACTACACCTCAA
ATCGTCATGGAAACCGTATTGAGTTCTTTGATTCTATGGCAACTGTTGCT
GGCTTCTTTAAACTTCAAAATGGTAGCGAAGTAATGGAGAGCCAGCATTT
AAATACCGGTTCTCACGTGATTCGTTTCCAAGCCTCACAGGTTGTCATGA
CGACTACCTAAGTATTCAAAAACAGACTAAACGAACTTTCGACCAAGCAT
TTTTAAAAGACACACGTCCTATAGAAGAAAATGAACTAGACGATATTGCA
GAACAGATATCTCGATCATGGCGTCACGTCGGTCGAAAACTAAACATTAC
GGAATCATCATTAAATGAGATAGACTTACGGACAGGACAGAATACGGAAC
GAGAGAAAGCCTTTCAAATGCTTTTAGAATGGCGTGAAAGGTTTCCGGAT
GATTTTAACAGGGATCAGTCTTGGTTATTTACCAAACGAAGCGCAAACGA
AATTCCAACACTCCACGGACCCTGTTGTTGACCTCTTTTTGGACTACACC
TCAAATCGTCATGGAAACCGTATTGAGTTCTTTGATTCTATGGCAACTGT
TGCTGGCTTCTTTAAACTTCAAAATGGTAGCGAAGTAATGGAGAGCCAGC
ATTTAAATACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041312XLOC_041312Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065941-proteinTCONS_00065941-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065941-exon-scaffold_448-1575043694:178296..178496TCONS_00065941-exon-scaffold_448-1575043694:178296..178496Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1575043694:177804..178055TCONS_00065941-exon-scaffold_448-1575043694:177804..178055Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1575043694:176641..176812TCONS_00065941-exon-scaffold_448-1575043694:176641..176812Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1510915933:178296..178496TCONS_00065941-exon-scaffold_448-1510915933:178296..178496Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1510915933:177804..178055TCONS_00065941-exon-scaffold_448-1510915933:177804..178055Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1510915933:176641..176812TCONS_00065941-exon-scaffold_448-1510915933:176641..176812Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1491911889:178296..178496TCONS_00065941-exon-scaffold_448-1491911889:178296..178496Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1491911889:177804..178055TCONS_00065941-exon-scaffold_448-1491911889:177804..178055Clytia hemisphaericaexon
TCONS_00065941-exon-scaffold_448-1491911889:176641..176812TCONS_00065941-exon-scaffold_448-1491911889:176641..176812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:176641..178496 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141823	0.187106	0.0965618	0	2.43051	2.34033	1.83804	3.1036	0.824904	0.725312	0.314033	0	0.420823	0.846393	0	0	0	0	0.613761	0	0.0954569	0	2.33599	2.82005	0.818349	1.61431	4.69828e-06	0.20754	11.0391	10.7151
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000488Death_domain
IPR011029DEATH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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