TCONS_00065929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065929
Unique NameTCONS_00065929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065929 ID=TCONS_00065929|Name=TCONS_00065929|organism=Clytia hemisphaerica|type=transcript|length=527bp
aaacctctaggaaaatgaaagaaattggtcGAAAAAGAGGCCGATTCTCG
AAATTTTGTCTACacaaaaattttggattctCCATTCGGGAAAAAAGTCC
gcgtgaaaattaatccacaattctttttttcattcaatactATCTCTGTC
ATTTTTTGTGAAACGATCCTTTTCGAAGTGTTAGGTAAATGTAGGCTGCG
CGAATCCCTGGAATACGCGACAACCCTtctattaaaatttattttgtcac
CTTTAATGTGCTCCACCAACTTAATGAACACAGTTaaagctctctaattc
gattttaaaGGGGGTTTCATCGATTAAGGGAGCATATTTAAAGTTGACgg
tggctttcaatattatcgaataatggagcgtatcgaatagtagaatgtcg
aattagagagcgtcggCTGTAATCAATTCTCCCTCGAtatgaaaaataag
aaacttaACCTTTATAAACCAAATAGATTTCTTCTTTAGCGCAAGTATAA
AATCGAAACAGAAGTTGAAAATTGGAT
Run BLAST on NCBI

transcript from alignment at scaffold_448:785548..786074+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065929 ID=TCONS_00065929|Name=TCONS_00065929|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at scaffold_448:785548..786074+ (Clytia hemisphaerica)
aaacctctaggaaaatgaaagaaattggtcGAAAAAGAGGCCGATTCTCG
AAATTTTGTCTACacaaaaattttggattctCCATTCGGGAAAAAAGTCC
gcgtgaaaattaatccacaattctttttttcattcaatactATCTCTGTC
ATTTTTTGTGAAACGATCCTTTTCGAAGTGTTAGGTAAATGTAGGCTGCG
CGAATCCCTGGAATACGCGACAACCCTtctattaaaatttattttgtcac
CTTTAATGTGCTCCACCAACTTAATGAACACAGTTaaagctctctaattc
gattttaaaGGGGGTTTCATCGATTAAGGGAGCATATTTAAAGTTGACgg
tggctttcaatattatcgaataatggagcgtatcgaatagtagaatgtcg
aattagagagcgtcggCTGTAATCAATTCTCCCTCGAtatgaaaaataag
aaacttaACCTTTATAAACCAAATAGATTTCTTCTTTAGCGCAAGTATAA
AATCGAAACAGAAGTTGAAAATTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041304XLOC_041304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065929-exon-scaffold_448-1491911889:785548..786074TCONS_00065929-exon-scaffold_448-1491911889:785548..786074Clytia hemisphaericaexon
TCONS_00065929-exon-scaffold_448-1510915933:785548..786074TCONS_00065929-exon-scaffold_448-1510915933:785548..786074Clytia hemisphaericaexon
TCONS_00065929-exon-scaffold_448-1575043694:785548..786074TCONS_00065929-exon-scaffold_448-1575043694:785548..786074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:785548..786074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22313	0.108794	0.973387	1.73018	5.34251	3.3289	0.874573	0.402846	0	0.245303	0	0.371509	0.0749245	0	0.321004	0.339924	0.167503	0	0	0.124102	0.326262	0.473526	0.383755	0.697779	0	0.221997	0.155986	0.501723	0.495315	0.38292
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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