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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065923 ID=TCONS_00065923|Name=TCONS_00065923|organism=Clytia hemisphaerica|type=transcript|length=1553bp
ctttttgctttatttgtgGACTTTCTCTAAGTTTTCATAAACAAAGCTCT
GAAGAGAAGAGTAAAAGGCTCTGTTGAAAACGTGAATTTCTCTCGCTAGA
TACTTTGTTTTGGAGGTAATCCGAGGTTCTTCTTGAAACAACTTTTCAAC
ATTGATTCTTATTACATCGCTTGTGGATTTTATCTTCAAAATACGACAGA
CGGTTCACTTATCGCACACAAAATGCCGAAAAAGTTCGCGCTGATAATCT
ATCTACTTATCTTGTTATGGCTTTGTACCCAAATACCTTTCATTCTACCG
GAAGAGTTTTATGAACATTATGGCTACATCATAGCTAGCACCTTTGCTGG
ATTTTTGCTAACAATTACATCATTAGCGACCAATGGATTTATTTGttatg
ttttggtgtttttttcaaacatcgGAGATCCCACAGATTATCTGTTCGTC
CTGATCGCAATCGCTGATATGTTTCTACCGTTATTGAAATACCCGATCAT
GGTCGCTGATTTATGgatttataaaaagaaactatACATGAATGTCAATT
ATCTCACTTTCAGAGATGCGACCGAGAAATTCGCAGCAAGTCATAATGGC
GTAGCAGCTGCGTCGGTTTTTACTTTCACGCTAATCTGTATTATAAGgtT
CTTTCAAGCGTTCAGAAAAGATGGTTTCAAACAAATGAAGACCTCTTGGA
AAATTGTATCTTCCGTCTCTTTGGGTCTATCGGCACTGGTCATCGGTCTT
GTCAACTACCACTTTATTAAAGAGGAATGGTTCCATGCTTTTCAAGCACC
TATATGCCTCTACTTTCCTTTGTTCGTGATGGCTTCGACTTTGATTTCTG
GATTCTTGAAAACTGAATTATCAACGTCTTATAACGAAGGAAGTACTGGT
CGACTTTTGGCTATCTACGGATTCTTCTTAGCTTACTTCTTTCTATGGAC
GCCTTCGTTCACTTTGGATATGCTTCACAAATACTGTTGCACTTTCGGAT
GGTATCAAAAAGAGCGTGCTAAAGTCATTGTTGAGAATCTATTCCATTAC
AAGTGTTGTATGAATATGTTTATCTTATACGCGTTTGATGATCAATTCCG
ACGTATCGCTAAACTAGCTAGTTGTTGTTTTCGCTACGGAAAAAAGAATG
TGTCTTTTGCACATGCGTTACAATCGAAAGATATTCGAATGCGGTTTACG
GTCAATAATGAGGAGATGATGATTGGAGAAGATCAAGGGATGGAGACTGA
AGATGAGCAAGCACTGATTGCTTGAAAATGGTTCATAAAATAAGGAAAAC
ACTGATTGCCTAGAAAAGTTAAGGACATTTTTGACTTTGTTAATTTGTTT
AGAAAGTAaaacattgggctcttccagaaaaattgTACATTGGGGGgagc
ataggcgtagcgagataccctgaaaaatttatgagggagtgcagacgttt
atgacatattcatcatcttttgataaaacacaaacaatatttacagtgtc
gtaaaaaccgctcttaTCCATAacttttgcagggtatctcgctacgccta
tgg Run BLAST on NCBI protein sequence of TCONS_00065923-protein >TCONS_00065923-protein ID=TCONS_00065923-protein|Name=TCONS_00065923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MPKKFALIIYLLILLWLCTQIPFILPEEFYEHYGYIIASTFAGFLLTITS
LATNGFICYVLVFFSNIGDPTDYLFVLIAIADMFLPLLKYPIMVADLWIY
KKKLYMNVNYLTFRDATEKFAASHNGVAAASVFTFTLICIIRFFQAFRKD
GFKQMKTSWKIVSSVSLGLSALVIGLVNYHFIKEEWFHAFQAPICLYFPL
FVMASTLISGFLKTELSTSYNEGSTGRLLAIYGFFLAYFFLWTPSFTLDM
LHKYCCTFGWYQKERAKVIVENLFHYKCCMNMFILYAFDDQFRRIAKLAS
CCFRYGKKNVSFAHALQSKDIRMRFTVNNEEMMIGEDQGMETEDEQALIA Run BLAST on NCBI transcript from alignment at scaffold_448:637596..640665+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065923 ID=TCONS_00065923|Name=TCONS_00065923|organism=Clytia hemisphaerica|type=transcript|length=3070bp|location=Sequence derived from alignment at scaffold_448:637596..640665+ (Clytia hemisphaerica)
ctttttgctttatttgtgGACTTTCTCTAAGTTTTCATAAACAAAGCTCT
GAAGAGAAGAGTAAAAGGCTCTGTTGAAAACGTGAATTTCTCTCGCTAGA
TACTTTGTTTTGGAGGTAATCCGAGGTTCTTCTTGAAACAACTTTTCAAC
ATTGATTCTTATTACATCGCTTGTGGATTTTATCTTCAAAATACGACAGA
CGGTTCACTTATCGCACACAAAATGCCGAAAAAGTTCGCGCTGATAATCT
ATCTACTTATCTTGTTATGGCTTTGTACCCAAATACCTTTCATTCTACCG
GAAGAGTTTTATGAACATTATGGCTACATCATAGCTAGCACCTTTGCTGG
ATTTTTGCTAACAATTACATCATTAGCGACCAATGGATTTATTTGttatg
ttttggtgtttttttcaaacatcgGAGATCCCACAGATTATCTGTTCGTC
CTGATCGCAATCGCTGATATGTTTCTACCGTTATTGAAATACCCGATCAT
GGTCGCTGATTTATGgatttataaaaagaaactatACATGAATGTCAATT
ATCTCACTTTCAGAGATGCGACCGAGAAATTCGCAGCAAGTCATAATGGC
GTAGCAGCTGCGTCGGTTTTTACTTTCACGCTAATCTGTATTATAAGGTA
CAATAGACTTTGCTATACACATTTTCGactgtagccgccaattgccgcgc
gatcatttttttgtccgctttatcccactaaactcgatccaatccttttt
tgacacatttttctactgtctataggtgcgaaaaaagaacTGGTcgattg
gcggctacggtcgaaaaggtgtattcgaaCCTTTATCATTAATCTTCCTA
TAATTATCGAACTCCCGGTCGAGGGGAATCCTCTGTGTAAAATGTTTTCT
ATGATTTAGGTTTTTGTTCAATTCAAAGATCTCCcttttgagttcgaatt
agccagaacccgggggggggggactcaagataaatgacctaccatacgtG
TGGTCCTTAAGGGTATAtcttccaagcttcccaaagtgcattTTAAGGGT
TGAAATCAGAAAAGATGAgcacttttttcgaaaatctgatcataattttg
cctgaaaatggtcaaagaatttcaaaaaaatgcaagTTGACTGTAGAATG
TAAGGGTTCGATTTCAAAGACCTGGTTTTGGGCTGCAAGTTTGGTCGTGT
TTGAatccagtgcccccccccgagAGTCACACAAGAGGGGATTTGGCTCA
AGGTTTACAGGTTGATTTTACACTGATTTATAATATTGCatgatttcaat
tttcaaattcatgattttttcaatttaggtTCTTTCAAGCGTTCAGAAAA
GATGGTTTCAAACAAATGAAGACCTCTTGGAAAATTGTATCTTCCGTCTC
TTTGGGTCTATCGGCACTGGTCATCGGTCTTGTCAACTACCACTTTATTA
AAGAGGAATGGTTCCATGCTTTTCAAGCACCTATATGCCTCTACTTTCCT
TTGTTCGTGATGGCTTCGACTTTGATTTCTGGATTCTTGAAAACTGAATT
ATCAACGTCTTATAACGAAGGTAAAACatttaatttaattatttaaaaat
ttattaaaaaccagttttttttcAGTTTACCTTTCTAGTGTGTCTCTGAG
GACACTGACTTTGACGACCGAAGGTATCGAAAATTAAGgacataatattt
gagaaaaaagggaaattccacaggaagttttgaaaccacaaacgatttgt
aAGTGCTATAAAATAGGTTCGAAGGGTTGAGTTTTTActttgagttttaa
cgctagacttaacacTTGGGAACTGAGGacccaaaagttcaaaaatagtt
caataaggctcagaatatagcctggaagtctaccaacccctcccaaattg
atagaccaaaatcgactttctcgccggcgaactttaaatcttgaaaaacg
ttaaaataatcggaattttcaatatatttcgaccatgattggaGTTTGAG
AGAGATTGATGAAGAGGTGAGGAATAAAAGAGCCCTGTCAGTCATATTCT
CGATTTCCAGACCATTATTCTTATTACGCAAAATAGGGGCAATTCTGCTA
CAAagtaaaaaatagaaaggaGTATGTCTGCCATAAAAAAAACGGACGAG
AGAGTGTTTTGAATAATCTCTCCTCTTTTGACGAGCGCACCTTCTTCTCG
TGGAGCTAATTATTGACCTGGAATTTTAAATTACTAGTCTAGTCTAGATC
TAGACTATGTCAGTCACAAACTTTTAGTATGGAACCTTAAAATATAGCCG
TTCTATTATTCCCTAGTTATCTTTTTTTGTGAGAAATGCTCCGGAAAAGT
GACACAGGAGATGACTAGAAATAATATAACAGCATTAAATCTTATCCTCT
CTACAGGAAGTACTGGTCGACTTTTGGCTATCTACGGATTCTTCTTAGCT
TACTTCTTTCTATGGACGCCTTCGTTCACTTTGGATATGCTTCACAAATA
CTGTTGCACTTTCGGATGGTATCAAAAAGAGCGTGCTAAAGTCATTGTTG
AGAATCTATTCCATTACAAGTGTTGTATGAATATGTTTATCTTATACGCG
TTTGATGATCAATTCCGACGTATCGCTAAACTAGCTAGTTGTTGTTTTCG
CTACGGAAAAAAGAATGTGTCTTTTGCACATGCGTTACAATCGAAAGATA
TTCGAATGCGGTTTACGGTCAATAATGAGGAGATGATGATTGGAGAAGAT
CAAGGGATGGAGACTGAAGATGAGCAAGCACTGATTGCTTGAAAATGGTT
CATAAAATAAGGAAAACACTGATTGCCTAGAAAAGTTAAGGACATTTTTG
ACTTTGTTAATTTGTTTAGAAAGTAaaacattgggctcttccagaaaaat
tgTACATTGGGGGgagcataggcgtagcgagataccctgaaaaatttatg
agggagtgcagacgtttatgacatattcatcatcttttgataaaacacaa
acaatatttacagtgtcgtaaaaaccgctcttaTCCATAacttttgcagg
gtatctcgctacgcctatgg Coding sequence (CDS) from alignment at scaffold_448:637596..640665+ >TCONS_00065923 ID=TCONS_00065923|Name=TCONS_00065923|organism=Clytia hemisphaerica|type=CDS|length=3159bp|location=Sequence derived from alignment at scaffold_448:637596..640665+ (Clytia hemisphaerica)
ATGCCGAAAAAGTTCGCGCTGATAATCTATCTACTTATCTTGTTATGGCT
TTGTACCCAAATACCTTTCATTCTACCGGAAGAGTTTTATGAACATTATG
GCTACATCATAGCTAGCACCTTTGCTGGATTTTTGCTAACAATTACATCA
TTAGCGACCAATGGATTTATTTGttatgttttggtgtttttttcaaacat
cgGAGATCCCACAGATTATCTGTTCGTCCTGATCGCAATCGCTGATATGT
TTCTACCGTTATTGAAATACCCGATCATGGTCGCTGATTTATGgatttat
aaaaagaaactatACATGAATGTCAATTATCTCACTTTCAGAGATGCGAC
CGAGAAATTCGCAGCAAGTCATAATGGCGTAGCAGCTGCGTCGGTTTTTA
CTTTCACGCTAATCTGTATTATAAGgtTCTTTCAAGCGTTCAGAAAAGAT
GGTTTCAAACAAATGAAGACCTCTTGGAAAATTGTATCTTCCGTCTCTTT
GGGTCTATCGGCACTGGTCATCGGTCTTGTCAACTACCACTTTATTAAAG
AGGAATGGTTCCATGCTTTTCAAGCACCTATATGCCTCTACTTTCCTTTG
TTCGTGATGGCTTCGACTTTGATTTCTGGATTCTTGAAAACTGAATTATC
AACGTCTTATAACGAAGGAAGTACTGGTCGACTTTTGGCTATCTACGGAT
TCTTCTTAGCTTACTTCTTTCTATGGACGCCTTCGTTCACTTTGGATATG
CTTCACAAATACTGTTGCACTTTCGGATGGTATCAAAAAGAGCGTGCTAA
AGTCATTGTTGAGAATCTATTCCATTACAAGTGTTGTATGAATATGTTTA
TCTTATACGCGTTTGATGATCAATTCCGACGTATCGCTAAACTAGCTAGT
TGTTGTTTTCGCTACGGAAAAAAGAATGTGTCTTTTGCACATGCGTTACA
ATCGAAAGATATTCGAATGCGGTTTACGGTCAATAATGAGGAGATGATGA
TTGGAGAAGATCAAGGGATGGAGACTGAAGATGAGCAAGCACTGATTGCT
TGAATGCCGAAAAAGTTCGCGCTGATAATCTATCTACTTATCTTGTTATG
GCTTTGTACCCAAATACCTTTCATTCTACCGGAAGAGTTTTATGAACATT
ATGGCTACATCATAGCTAGCACCTTTGCTGGATTTTTGCTAACAATTACA
TCATTAGCGACCAATGGATTTATTTGttatgttttggtgtttttttcaaa
catcgGAGATCCCACAGATTATCTGTTCGTCCTGATCGCAATCGCTGATA
TGTTTCTACCGTTATTGAAATACCCGATCATGGTCGCTGATTTATGgatt
tataaaaagaaactatACATGAATGTCAATTATCTCACTTTCAGAGATGC
GACCGAGAAATTCGCAGCAAGTCATAATGGCGTAGCAGCTGCGTCGGTTT
TTACTTTCACGCTAATCTGTATTATAAGgtTCTTTCAAGCGTTCAGAAAA
GATGGTTTCAAACAAATGAAGACCTCTTGGAAAATTGTATCTTCCGTCTC
TTTGGGTCTATCGGCACTGGTCATCGGTCTTGTCAACTACCACTTTATTA
AAGAGGAATGGTTCCATGCTTTTCAAGCACCTATATGCCTCTACTTTCCT
TTGTTCGTGATGGCTTCGACTTTGATTTCTGGATTCTTGAAAACTGAATT
ATCAACGTCTTATAACGAAGGAAGTACTGGTCGACTTTTGGCTATCTACG
GATTCTTCTTAGCTTACTTCTTTCTATGGACGCCTTCGTTCACTTTGGAT
ATGCTTCACAAATACTGTTGCACTTTCGGATGGTATCAAAAAGAGCGTGC
TAAAGTCATTGTTGAGAATCTATTCCATTACAAGTGTTGTATGAATATGT
TTATCTTATACGCGTTTGATGATCAATTCCGACGTATCGCTAAACTAGCT
AGTTGTTGTTTTCGCTACGGAAAAAAGAATGTGTCTTTTGCACATGCGTT
ACAATCGAAAGATATTCGAATGCGGTTTACGGTCAATAATGAGGAGATGA
TGATTGGAGAAGATCAAGGGATGGAGACTGAAGATGAGCAAGCACTGATT
GCTTGAATGCCGAAAAAGTTCGCGCTGATAATCTATCTACTTATCTTGTT
ATGGCTTTGTACCCAAATACCTTTCATTCTACCGGAAGAGTTTTATGAAC
ATTATGGCTACATCATAGCTAGCACCTTTGCTGGATTTTTGCTAACAATT
ACATCATTAGCGACCAATGGATTTATTTGttatgttttggtgtttttttc
aaacatcgGAGATCCCACAGATTATCTGTTCGTCCTGATCGCAATCGCTG
ATATGTTTCTACCGTTATTGAAATACCCGATCATGGTCGCTGATTTATGg
atttataaaaagaaactatACATGAATGTCAATTATCTCACTTTCAGAGA
TGCGACCGAGAAATTCGCAGCAAGTCATAATGGCGTAGCAGCTGCGTCGG
TTTTTACTTTCACGCTAATCTGTATTATAAGgtTCTTTCAAGCGTTCAGA
AAAGATGGTTTCAAACAAATGAAGACCTCTTGGAAAATTGTATCTTCCGT
CTCTTTGGGTCTATCGGCACTGGTCATCGGTCTTGTCAACTACCACTTTA
TTAAAGAGGAATGGTTCCATGCTTTTCAAGCACCTATATGCCTCTACTTT
CCTTTGTTCGTGATGGCTTCGACTTTGATTTCTGGATTCTTGAAAACTGA
ATTATCAACGTCTTATAACGAAGGAAGTACTGGTCGACTTTTGGCTATCT
ACGGATTCTTCTTAGCTTACTTCTTTCTATGGACGCCTTCGTTCACTTTG
GATATGCTTCACAAATACTGTTGCACTTTCGGATGGTATCAAAAAGAGCG
TGCTAAAGTCATTGTTGAGAATCTATTCCATTACAAGTGTTGTATGAATA
TGTTTATCTTATACGCGTTTGATGATCAATTCCGACGTATCGCTAAACTA
GCTAGTTGTTGTTTTCGCTACGGAAAAAAGAATGTGTCTTTTGCACATGC
GTTACAATCGAAAGATATTCGAATGCGGTTTACGGTCAATAATGAGGAGA
TGATGATTGGAGAAGATCAAGGGATGGAGACTGAAGATGAGCAAGCACTG
ATTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065923-exon-scaffold_448-1491911889:637596..638242 | TCONS_00065923-exon-scaffold_448-1491911889:637596..638242 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1510915933:637596..638242 | TCONS_00065923-exon-scaffold_448-1510915933:637596..638242 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1575043694:637596..638242 | TCONS_00065923-exon-scaffold_448-1575043694:637596..638242 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1491911889:638924..639165 | TCONS_00065923-exon-scaffold_448-1491911889:638924..639165 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1510915933:638924..639165 | TCONS_00065923-exon-scaffold_448-1510915933:638924..639165 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1575043694:638924..639165 | TCONS_00065923-exon-scaffold_448-1575043694:638924..639165 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1491911889:640002..640665 | TCONS_00065923-exon-scaffold_448-1491911889:640002..640665 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1510915933:640002..640665 | TCONS_00065923-exon-scaffold_448-1510915933:640002..640665 | Clytia hemisphaerica | exon |
| TCONS_00065923-exon-scaffold_448-1575043694:640002..640665 | TCONS_00065923-exon-scaffold_448-1575043694:640002..640665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:637596..640665 + |
Blast
The following BLAST results are available for this feature:
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