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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=transcript|length=2305bpRun BLAST on NCBI protein sequence of TCONS_00065917-protein >TCONS_00065917-protein ID=TCONS_00065917-protein|Name=TCONS_00065917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp MGDDELKYLMVDRRQVSDPVAHAEWASKKLCWVPSEDHGFLSASIKKEDGRun BLAST on NCBI transcript from alignment at scaffold_448:554441..560716+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=transcript|length=6276bp|location=Sequence derived from alignment at scaffold_448:554441..560716+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:554441..560716+ >TCONS_00065917 ID=TCONS_00065917|Name=TCONS_00065917|organism=Clytia hemisphaerica|type=CDS|length=17880bp|location=Sequence derived from alignment at scaffold_448:554441..560716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065917 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3) HSP 1 Score: 1110.52 bits (2871), Expect = 0.000e+0 Identity = 504/749 (67.29%), Postives = 616/749 (82.24%), Query Frame = 1
Query: 76 DDELKYLMVDRRQVSDPVAHAEWASKKLCWVPSEDHGFLSASIKKEDGDKVTVQL-DGGKSATFHKDDIQRMNPPKFNKVEDMADLTCLNEASVLNNLKDRYFSDLIYTYSGLFCVVVNPYKRLPIYSEKVVALYKGKKRHEVPPHVYAIADSAFRSMLQDRENQSILCTGESGAGKTENTKKVIQYLTAVAGRNQGKVDAEDKTQGKLENQLLQANPILEAFGNAKTVKNDNSSRFGKFIRIMFDSSGFICGANIDQYLLEKARIVRQAPEERTFHIFYQLLLGASPEVKKQFLLLEPTAYNFMSNGTVSLANMDDRAEFKATLEAMRDMGITQEELDPIFKVISSLLLFGNMEFKQERKSDQATLPDNTIAQKICHLLGMPVTDFTKSLLKPRVKVGREFTQKAQTKAQCEFAIEAISKATYERLFKWLVGRINKSLNKGKRDGNSFIGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQKEGIDWKFIDFGLDLQPTIDLIEKPM---GLLALLDEECWFPKATDKSLVDKLNKQHLKHPKYLKP-DFRSNSDFCVIHYAGRVDYSATQWLTKNMDPLNDNIVSLMTQSKDSFISGLWKDVDNIVGMSVADSM-DTAFGAS-RTKKGMFRTVSQLYKEQLAGLMNTLHSTKPNFVRCIIPNYEKRAGKIDNHLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILCPGIVPRGFMDGRKAAQQMVYSF 2301
+D +YL VDR + +P A+W +KKL W+PSE HGF +ASIK+E GD+V V+L + GK A +KDDIQ+MNPPKF+KVEDMA+LTCLNEASVL+NLKDRY+S LIYTYSGLFCVV+NPYK LPIYSE ++ +Y+GKKRHE+PPH+YAI++SA+R MLQDRE+QSILCTGESGAGKTENTKKVIQYL VA ++G+ D G+LE QLLQANPILE+FGNAKTVKNDNSSRFGKFIRI FD +G+I GANI+ YLLEK+R VRQA +ERTFHIFYQLL GA +K LL Y F+SNG + + D+ F+ T+EAM MG + EE+ + KV+SS+L FGN+ FK+ER +DQA++P+NT+AQK+CHLLGM V +FT+++L PR+KVGR++ QKAQTK Q +FA+EA++KATYERLF+WLV RINK+L++ KR G SFIGILDIAGFEIF+LNSFEQLCINYTNEKLQQLFNHTMF+LEQEEYQ+EGI+W FIDFGLDLQP IDLIE+P G+LALLDEECWFPKATDK+ V+KL ++ H K+ KP + +DFC+IHYAG+VDY A +WL KNMDPLNDN+ +L+ QS D F++ LWKDVD IVG+ M +TAFG++ +TKKGMFRTV QLYKE L LM TL +T PNFVRCIIPN+EKRAGK+D HLVLDQLRCNGVLEGIRICRQGFPNRI+FQEFRQRYEIL P +P+GFMDG++A ++M+ +
Sbjct: 8 EDPERYLFVDRAVIYNPATQADWTAKKLVWIPSERHGFEAASIKEERGDEVMVELAENGKKAMVNKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKD--HNIPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRAL 754 The following BLAST results are available for this feature:
BLAST of TCONS_00065917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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