TCONS_00065909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065909
Unique NameTCONS_00065909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2054

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065909 ID=TCONS_00065909|Name=TCONS_00065909|organism=Clytia hemisphaerica|type=transcript|length=2054bp
TTCAGCTGCAGAAGGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTA
CTGCTGGAAGTAGGCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacgga
acggaacggacGGAAGACACTACAAACAGCTCTTGACGTCCTCGAATCAc
actttgtcaatttttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGA
AAGATTCAGATCTCTATATACAAGGATCAACGTGCAATGAGATGAGAATA
AAAATTTCGGACATTTTCAAAGATGTCAGAGCAACCTAACAGAAGAATGG
GCAAGGGAGAGAAGAAACGCCCACTAAAAATTGTCATGCCTCCTGTTCAC
CAAACGCAACCTCAACCAGTaaatgctccaAGGAATTTATCAGATAGAAC
CACATTAACTGTGAACAGCCAGGATTACCCGTGCAGTACTGATGATTTGA
TAGAAATATGCGAGCTTGGTCGTGGGGCCTATGGGGTTGTAGAAAAAATG
AGACATAAACAAACTAACATAGAAATGGCTGTGAAGCGTATTAGGCACAC
GGTCAACACGACAGAGCAAGGTCGTCTATTAATGGATTTAGATGTTTCAA
TGAGACTTAGTAATTACCCCTATGCCATCCAGTTTTATGGTGCACTCTTC
AAAGAGgGAGATGTTTGGATATGCATGGAACTCATGAAAACATCATTCga
taaattttataaaaaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAAA
AAGTACTGGGAAAAATATCCTTCGCTGTTGTTTCTGCATTGGAATATTTA
CATAGTAAAATGAAAGTAATCCACAGAGATGTCAAACCGTCCAATATATT
AGTTAATGATAACGGAGAGATCAAATTATGTGACTTTGGAATCAGCGGAC
AACTGGTTGACTCTCTGGCAAAAACCCTTACAGCTGGCTGTAAGCCCTAT
ATGGCTCCTGAACGTATCAACCCAACGAAGGGACAACATGGTTATGATAT
ACGTTCTGATGTGTGGAGCTTAGGAATCACCATGGTCGAACTGGCATGTT
TGAAATTCCCCTACAGCAGGTGGACAACACCCTTCGATCAATTAAAAGCA
GTGGTAGAGGAGCCTTCGCCTACGATACCACCCGAACATAATTATTCTGA
TGAACTTCATCAATTTATTTCACTTTGtttgaagaaGAACTTCCTGGAAA
GACCAAAATATGACACTCTATTGACGGACTCATTCATCCTGACTCACGAG
AAAACACCGGTTAACGAAATCGCAGGCTTCGTTCAACCCATCCTGGACCA
AGTATGAATGACTAAACGTCACATGTCAATCAAATGACGTcatatgacgt
aatcttttcgaAAATGGGAGTGTCTTTACAATTcaagtttttttggcaaa
ttgtGCTGGCTATGACACTGCTTGGCTTAAATGACGTCACTTTCTATAAG
AAATCGAACCACAGAAATTCATCGAATGAATATACCTACCAGCCCTCGTG
TCGTATAGAACTCTATAAAAGCGGACCGGACTTCAAGTTTACTGGGACCG
AATGACACCAATCAGTCTCAAGTCAATATTATGACTCTCACAGCTTTtag
aaatatttgacgtcattcGATCTCGATAAACTCGGGTCCAACCCCCTTGA
GTTGATTGGTTTTATTCAAAGCCTAAAAGGCCTGAGCTTTAAAGACATTT
GTTACATTGTTAGTTCGATGTAAATCGAatattttttatagttttttgtG
GAGAAAGCGAAATGAATTATGGGAATGTTGCATTGCATTGCTTGGCAATG
TTAGTGCTTAGTTTTCATCTTTCGTCAAATCAGCTTTTTCTTGTTAAACG
Ttgtttagctctagtttagacggcccatcttttgccctgcctattctgat
tgtgaattaaagtgggctgtctaaagtcaaagCAATGTCCTCTTTTGACG
CTAATGCAATATTGTCttctttcaaacttttccagcttttccaagcaaag
attttaactaccAAGTTTGTGCCCTCTTTCTATCTACTCTAACAATTAAA
ATAG
Run BLAST on NCBI

transcript from alignment at scaffold_448:528577..544571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065909 ID=TCONS_00065909|Name=TCONS_00065909|organism=Clytia hemisphaerica|type=transcript|length=15995bp|location=Sequence derived from alignment at scaffold_448:528577..544571+ (Clytia hemisphaerica)
TTCAGCTGCAGAAGGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTA
CTGCTGGAAGTAGGCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacgga
acggaacggacGGAAGACACTACAAACAGCTCTTGACGTCCTCGAATCAc
actttgtcaatttttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGA
AAGATTCAGATCTCTATATACAAGGATCAACGTGCAATGAGATGAGAATA
AAAATTTCGGACATTTTCAAAGATGTCAGGTATGTGTTTTTTCAGGGCCA
TTTTGCGTTGTTCGTAAATTTCTTTTTGGTTGCCGACACTTTTCCCTTTG
CTCACAGTTTTGTTCTATGAAGCTCACAGTCTTAaaatgaatagaccttt
tttcaaagaggccaccctgttgaataattatgtagtccagcagaaaaaca
atgataaaaccatgcataattatcacaatatgcatgatacagtaattatg
catggctctatcattgtttttatggctggactacataaccagacgatgtc
aatcgaacggaatcgaacaaaaattccaatcgaatcaatcgaacgcaatc
gaatgattgcgattcgattgccaaacgcaatcgaatatcaatcgaacgta
aaattctgggtaaaattcgattgattcgattgatattcgattacgttcga
ttgatgttcgattacgttcgattgatgttcgattacgttcgactgcGTTC
GACGGGTGGTCAATTAAATTAGATTCCAATTtacctcaattcctttcaaG
GTGATATGGAAATCGCGAACCGGCCAAACAGCCATCGTACTCGTAGATTT
TGCGGGCAACGTGACATACAGCCGTCTTTTCTTCGATTCATATCATCTCG
TTTAACGCTTCAAATGTTGAACAAGAATCAACgttaatcaacagaatcaa
ttagtcgaaccagtcgaatgcaTAAGCCAATCGAACGtagtcgaatcaat
cgaatacattagtcaatcgaacgcaatcgaatcaatcgaacacagtcgaa
tcaatcgaatcaatcgaatccaggcactaatcgaacgcaatcaaatcaat
cgaacacagtcgaatcaatcgaatacattagtcaatcgaacgcaatcgaa
tcaatcgaacacagtcgaatcaatcgaatcaatcgaatccaggcactaat
cgaacgcaatcaaatcaatcgagaaaatcgcggtaatattcgattgacat
tcgattgcgttcaattgattcggcgttcgatttgttcgattgacatcgtc
tggacataattattcaacagggtggcctctttgaaaaatattattccttt
ctctaaaaaagaagggtgtcggaattagacgaggcgAGGGATGTCCAAAC
GATcccaatcgaacggaatcgacgatcaaaccagtcgaaccaaatcaaac
gcaatcgaccgggttatttttttcttgtattttttgaaattgtctggTAC
TGTTGGATtctagaggaggggtgtcgatattagaccaagttGCGGTACGC
ACCACCACTAAGGGGGaagggggtcttctcaaaagcgtatgcttgctaAC
AGggcacaagtgttacgcgtaagccaaatcgcgtattatgaacaacctct
aaattgctgattacaggagaaaaaaaatcgaaattcaaaatggcagcCAA
GCCCAcactgataactatcaaaaatctttgtttttcaatcagctaccgtg
agattgggtaacttgcatcagtggaggcaaacatgcataaacctcaaatg
aaagacctgtattaagttgaagttggtttgatattctacgtttgacgttt
gatattcgtttgatattctcaaatttgcgttttgaagtttttgtgactac
ttttggaactggaaactattggaagccaatagactTTATTCTCAAGtgtg
tctgtgcaaaatttcagcgctctccgtcgcagtgtgctccctctaaaaat
ttgtaaccgtcaaacctcatttcggccgaaatgacaagttgggctcctgt
gggggagagcggttatctttggaattggaaactattggaagccaatagag
tttattctcaagggtgtctgtgcaaaatttcagcgctcttcgacgcagtg
tgctccctctaaaaatttgtaaccgtcaaacctcatttcggccgaaatga
caagttgggctcctttGGGGGAGAGTGGTTATcattggaattggaaacta
ttggaagccaatagagtttattctcaagggtgtgtgtgcaaaatttcagc
gctctccgtcgcagcgtgctccctctaaaaatttgtaaccgttaaacctc
atttcggccaaaatgacaagttgggctcctgtgggggagagtggttatct
ttggaactggaaactattggccatttttagagggagcacgctgcgacgaa
gagcgctgaaattttgcttccaatagtttccagttccaaagataaccact
ctcccccacaggagcccaacttgtcattttggccgaaatgaggtttaacg
gttaccaatttttagagggagcacgctgcgacgaaGAGCGCTGATATttt
gcacagacacccttgagaataaagtctattggcttccaatagtttccagt
tccaaagataaccactctcccccacaggagcccaacttgtcattttggcc
gaaatgaggtttaacggttaccaatttttagagggagcacgctgcgacgg
agagcgctgaaattttgcacagacacccttgagaataaactctattggct
tccaatagtttccagttccaaagataaccgctctcccccacaggagccca
acttgacatttcggccgaaatgaggtttaacggttacaaatttttagagg
gagcacgctgcgtcgaagagcgctgaaattttgcacacacacccttgaga
ataaactctattggcttccaatagtttccagttccaaagataaccactct
cccccacaggagcccaacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncgctgcgacggagagcgctgaaattttgcacacacacccttgagaataa
actctattggcttccaatagtttccagttccaaaagtagtcacaaaaact
tgaaaacgcaaatttgagaatatcaaacgaatatcaaacgaatatcaaac
gtcaaacgtagaatatcaaaccaacttcaacttaatatgacctgtctggt
catttaAATACAACTACACAGCTccactcgcagctctactctaccatttt
tgttttgattaaattttgtattttaatgactagccaggtctttcatttga
gggctatgcatgttagcctccactgatgcaagttacccaatctcacggta
ttacagctcaataaatcaatgaaataatttgaaataaaaagtattaCAAA
cgttgaacctttcatgaatccaaataaataaaagtatttatctaaagtga
agattgcatttcaaaataaaacgatatCCAAACCAACTTAAAGACAGTGT
Ctgcctagcctggatatccaggctgtaaactatttcacagtctagtcttt
gatattttatgttctggtttacagcctggtctccctagagcgatttgcat
tctccatatgagaatgcagtctGCTTGCTTGTGCTCATTTCGCTGAAGCC
GTAAGGACCAATCTACACGGTGcggagcaattctgaagcaaaaataggat
agtcctccacttgctagtgaagagagcgctttctgttacatgaaaacatg
aaaaagaagaaaacagaggcaagttcattttccaagaaaacatggtctga
tgtttggtcatgataatgcatgcaaacttgttcatgggctccggtgtaat
ctttggatgttttaaatggttttagataTTGTAAGGCTGCTTTTATTAAG
TTCTGTTTTgatgccctgggttggctaggaaagttttggaaacatgggtt
tgcactttcattctctagggagaccaagctttataattttagaactttgt
atgttgaggtaaattttgttttttctaaaattttgagcttggatatccag
gctagtgtctgccaactaaaaatttctctgcggggtcactgcactggcaa
ggagttacgacttcagactttagattccaattcttgtgtaggctgcaact
acactgccaaatgatctgtattacaaatacttccaaataggtccataagt
taagaaaatgaaattatcatctagcacgggggttttgtttttaaaaacaa
acttcaaaataaaattgttaatgaacttgttacttaaaatatcacNNNNN
NNNNNNNNNNNNNNNNNNatcacttacttacataatttatttatgatata
acacccctttcttaaataaatggcttcttaaagtcttttatgtttgccgc
aagaagggagaaaaatttaatttaatttgatAAAGCGCTCccacagcatt
aatctttgatacgcaatGCAGCAGGGTGCAAGTGTGACTAATTTTTAGAT
TAGGCTAGAGTTATCTCCTTTCTCTGTCCTAtttcaacaatacaatgctT
ACATAGTTGACACATAATACACATTGACAGAAGTATTCTCCATGCAATGT
TTAGGCTGACCctcaaaatatttccttttccGGTCCACCAGGTGACAACA
AAAAAACACGTGGTTGGCCGCAAAAAAGATTATCTTGCTAAATTTTGATC
TCAAAACTCAAATTTTGGAAGTACTCAAGGAAGCACTCGGGGGGGGGGAC
TCAGAGTTTCttaaagttacaaagaaagcgagttgataaaatgAGGTTTA
GAGACGTTTATTAAAGTGACGAAAAAAGCGAGTGAATAAACTGAGGTTTA
AAGACGTTTGTTGGGCGTTAGTAGTCTTCAAGAGGCAGGGGTGTTAAAGT
CTTGTCCCCCACGCAAGGGAAAGCACGAGTTCttccaaaattaattcttt
gGTAATCAAACGCTAGAGAAGAAAACTAACTGTAGTCATTTTTCTATGAC
GTAAACAAAGATCTCTACTAAATTCAACACGaaccaaacaataaaaaaaa
tccaatgtCTAAACAAAAGTTCAATGTGACAAAGCTCATCGAGACCACTT
TATTTGTTTCGATTATTAATTCTAAGGATTGaattttttctaatctttaG
TTATCAAACAAAAGCGGGAATCTGATGTGagcgttattttttcaaagaat
ccttTACCTCCATTTGATTGGATACTTCTTTTTAAACAATCGCACAGCAA
TTTTTtgattggaaaaaaatgaaacaattgaTATCGCAGTGATTGTATGG
TAAAATATTTGGCCCTTTCACGAGTGTTTGCAATTTAACAAGATAAATCA
ATGTGACTGAACGTCTGTAAACCTGATAAAGACCTCCACTAAGAAGTTCG
AAATATTGTTTGAAATAAGATTTATATGAAGAATGACTATTTGAACTTAC
ATAAATGAAGAACAATGTAAATATGGGTGATTTCTTAGTTTTTCTTCTAT
GTCTTCATGTACACCAATCCGGGGAGTCTCCATATATATACCATAGGAAA
GTTCATGAAACCTGCTAACTTTATTTTGAGTTTAGCAAATCCCCAAGATT
GGCAAACAATCATTTTCGGCTTTTCACTTTGATCCTTTATCTGTTTCTTT
TTGGGTCATGTTTGGGGCATAATAGCAAAACATTGGTGTTCGGGCTAAGT
TAAGGCAACAAAACTTTAGATTTTGCCTCTGAAAACCTGGCCTGAACATG
CGCAGGGCAAGTTTGGGTCATGTTAGGGCCAAGTTGGCACCTCTACTTTC
ATAAGCTAAATCTTGGTACCATTTTCAATTTCCCAACTTTCTCTTGGAAA
AAATCACAATATGTGACTCCAAAGGCAGTTTTAAGTaattagaaaataga
aaattctataataaaatcagcatttttaagtaaaaactcttaaccctatt
caaactaggcttttaggggcggttcagaactagggggggcttttcctgta
ccaccccttaacttttgatctagtgggtctttttggatgaaatttggcac
acaagatccttgtgacgtaaggtaacttttgacaaaaaaaattttttgat
gacgtcactcatcatgcccaaagtgagcaaaaaccgaaaatttcctttgt
tcttataaatagctattgtattctaacaaaggctttagaaaaaagttgcc
tgagtttaaaatgcttattttatcctaaatattcaaaaaattacggtcta
aacgatatatttgacaatgaaaataaatttgtattgtaaaagtgtcaatt
tttgtgacaccttactgtcagaaatgtcatcatgctcaaggtgtgaaaat
atttaggtgacaaatttttttttattttgaagctaaataaaagttaagaa
tttacagaaaatttcacggcaaaagctctattatttcaggagctattaga
aatagtttgacctccgaacagaaagagccccccccccctagtacgaatag
ggttaatatCCCAAGTAATTTTTGATTTACAAGTGCCAGAAATCTTCCCA
CCTGTCAAATAAAATCCCCTCCTAATTTTACAGATTCtaccatctgccaa
attaataCCCgccaaaaattgcattttggccaaccgccaaattaagtacA
CATCGAAGTTGATACACTTCGGCAACAAATACCTGGTTTTCTGAAAGTCC
CATGctatatttatttattcatgctttctttatttctttctgtttctatt
tcaaaaattgtctaGTCAGAACAGTCTATAAGATTCTGAGTGTTTTTCTT
GGAACGTTTTAAAGAGGTTCAATGTTTCTGGTTGAAATCTGAAGATCATC
TCGACTCTCAAAAACAATATCAAATCTGATCAGATATCAACTGTTAGATT
ATTAGATATTAACTGTCAATAAATCTTTAAAGGAAAACAGACTAAAAGCG
GCCTGCAAAAAACAGGAACCTTTAGCTTTGCCAACTTTAAAGGCCCTAAG
GCAATAAACAACTTACTGAAGTGGATTCTTATCAGGTTTTAATATTGCCC
AACAGCAGTTGGTTTTAATATTGCCCAAATCCATCACCCACCCCCACCTC
TAAGAGGTAACGAAATATTTGGGCTGGAAGTTGCTAAGAATTTTAGCTGT
TTCAATCATGTCAGGAATCTGGGCTGTGTGAAGGTTATTTTTGAAGGGTT
GTTTTAGAATTCCTTTTAATTGTCAGGTTACTAGATAAACAGTGTTCTAC
TTGAAATAATATAGAAAATATGGTGTTATTTTATGAAAGGGAATTTGAGA
AAGGGGAATTCCCCTTCTACAtgattttccaggaaaaattcaatttgGTC
ACATGAATTTCACTGTCAACAAATTTTTTGATATcttcatatttttaaac
aatattcAATACAGATGCAAACCTTTTGAGATGATTTGATGACAACTTGT
TTTCACCTTTTCTATTTCTTCAGTGTTCAATCAATATATATCTTGTTTTT
ATATACAGAGCAACCTAACAGAAGAATGGGCAAGGGAGAGAAGAAACGCC
CACTAAAAATTGTCATGCCTCCTGTTCACCAAACGCAACCTCAACCAGTG
TAAGacaatttcaccattttattttatcattctCTAATTTAGCTCAATGG
AGCATTTTTTTGCATATCGATTCTGCTTCATCATTAACATTTTGTTTAAC
AAGCAACTATATTTTGCAATTAatgtatttttgtgaaaaaaaagctaaaa
aacttGTTTAGTAGGAACATCTCTAttgtttttagaaatgctccaAGGAA
TTTATCAGATAGAACCACATTAACTGTGAACAGCCAGGTAAGTAGTACGG
CTTAATGAATAATATTTGACTCATTGACACAATGTGTGACCAATCAAGTT
TAAAGACAGTAATGGGATACTTACTTGAAATCCCGCAGACTTTCATAGTG
GTATAAGGGTatcaaccattgagtttaaaggcaaatgggctagagaggaa
tcttcagcCTTTCTCCCCTTAAtttttgttctgtttttatgGGATGCCTG
ATGAGACTTTGCCCTTTTTTGTTCTTGCATAATCCATTTTTCGAAACCAG
CTAAGAGTTTCTCTAACCccgcttcaaactcaatggtatcaaccaggcca
tattttagaaaggcaaggcagcgtccgttggtggccaaaaagggcacttt
ttcttatgtttttccactaaaaaggctgtttttaccaatattttagtaat
ttcaagagGGGCAGTGTCCGATAACCGGACgcttaaagggcatgaaaaat
ggcctgtcAACCCCCTCACAGATATGACATCTCCTAGATTTTTTACTCCA
CTCCTTCCCCTATAGGAATGTGTTAGTGCTTTGATAGTTTGATGTTGTAC
CTATCATAAAATGTCTATTGAATTTTCGCTCTTTTTCTTTCAGGATTACC
CGTGCAGTACTGATGATTTGATAGAAATATGCGAGCTTGGTCGTGGGGCC
TATGGGGTTGTAGAAAAAATGAGACATAAACAAACTAACATAGAAATGGC
TGTGAAGGTTTGTTCATTCTCAAAATCCCAGATCTTGATTGAAAATCTTC
ATCTCTCTTCTTGTTTTTTTAGATTGAACTAATTTTTGACTTTACTAAAA
AGCATTGTTGCTACCTTTCAATTTACTTTAGCCCATTAGACCTTCATATG
CAATGTCTAACTAAGTACTTCAtgaaaatttacaataaaagtGACAAGTT
ATAGATTTAACTTTTACTTACACACATATTTTTAGGACTTCAATTCAAAT
TCTAGACTGTTATATTTGGTAACTTTGCTTATTTTATAGCGTATTAGGCA
CACGGTCAACACGACAGAGCAAGGTCGTCTATTAATGGATTTAGATGTTT
CAATGAGACTTAGTAATTACCCCTATGCCATCCAGTTTTATGGTGCACTC
TTCAAAGAGGTAAGTCTGATCTATTTTTTCAGGATATTCCTAAACAGAAT
AAATTTTCAcggttaattttttttgatggacAGCATAGCTATTATATATC
TTTAGGTTAAATATGTACGAACAAGGTGCTCATgttaatcttttgttttt
tttctaggGAGATGTTTGGATATGCATGGAACTCATGAAAACATCATTCg
ataaattttataaaaaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAA
AAAGTACTGGGAAAAATATCCTTCGCTGTAAGtgttctttgtttttttga
ttCGTGTTTTTAAAATTCCAGTCCTTCTTTCATAGCAGATCCATCCTGCG
CAAACCACGCTCTGCTGTAAAGTGATGGCGTGAATGTGacgatctgacct
ggttgttcagcTAAAACAATCAAAACCGCACCACCTCttgcgaaagtgaa
agtgcatGGCCATTCAAATTTGTTCAAGTCAAATGCAAGGAACATGCATA
TCCCTTCAAATTACACAAATAAATAAAGTCACAGTCAATTTAAGGTCGAT
TCTTGACTATTTTTAATACAGGTGTTTCTTAAAAACGAAATTCTTATATg
aatactttttgctttttcagGTTGTTTCTGCATTGGAATATTTACATAGT
AAAATGAAAGTAATCCACAGAGGTGAGATAATTATTCGGTTATAAGTTGT
TCCCAAAGACAATGAAAATTTGGGTAAAGTTCTTCGAAAAATTCTCAATC
CCTTATAATTAATTACGAATTCATCAGAGTAAGCATTCACCCACGACTTA
TAACTTGTTATCGAAGCTTATAAATATAGCTGAATCTATAGATTTTATCA
TTCCCTGAGGATGGAANAAAGCTTAGAAATATACCTGAATCTATAGATTT
CATCATTCCCTGAGGATGGAAATcttgaatgttttttatttacgaTGAAA
TCTTTCTTAGATGTCAAACCGTCCAATATATTAGTTAATGATAACGGAGA
GATCAAATTATGTGACTTTGGAATCAGCGGACAACTGGTTGACTCTCTGG
CAAAAACCCTTACAGCTGGCTGTAAGCCCTATATGGCTGTATGTTATAAA
ATACTTATACTTTACTGATAACTCCTGTTATTCTACTGTCTCTCTCTTTT
CATCTAACACAAGTTCTATACGTTCTTAAATGACCTTCTGATTGCTGTTA
AGCTTTCTCATTCCCAGGGGAAACATTTCAGGTGCATTTCCAGGATCTTT
CTAATGTTTTTCCTGGGTATACtggaaaaataattcttttgcTGCTTGCA
AATACGTAACAAACAATGGCCTTGTGACTGACCACCTAATAAGTTGAAGC
TACTTTCCTACCTACCCAGAGCGTTGGTTTTTTACGTTGTTAAAGTGGCG
ATAGGAAAGCTTTGCCGTGAATGAGAAAGATTAAGCCATTCTATGTTATA
TTTGACGGTTGAGTCTGTCAGGTTCACGAACTAAATAAATCAAATccgat
aaaaaaaaattcttctttggAAGTGTTTACACCGCAACATTACCCTAACT
TTCGAAAGTCTGTTCCGACTTAGAAATCAACTTCCAAAGCAAAACCAATA
AGTAGTGAACAAGAATTTCGTCACCGGTAAAGTAGCAAACTTCCCTTAGG
TAGGGCGATTCTCTGAGGTTTCCACTGCGTTAAGGTAAAATTAACTTTAA
AAGTATTTAAATCGAGCTACATTTTACATTTCAGCCTGAACGTATCAACC
CAACGAAGGGACAACATGGTTATGATATACGTTCTGATGTGTGGAGCTTA
GGAATCACCATGGTTCGTTTGAATGATTTTTCCACTCATATTCTCaattt
cagttgagctagaatctgagaatgtatGTCAGTCAGTCTGTATGTCAGTC
ACctcaaaactttagggcaggctggagacttcaaaaatggtccgattcgg
ctgaaattttgtacacttgctccttgggtgaatacctgggggtgtttttt
tcatttttttttcattttttttccaaattctgATTCtaacaatctttttt
tttttattccattttttttattgttacaattgggcctacgagtAATTAAG
AAGATACCGAAGTTGATctagtgcggttagcacgttcgacagttttGTCA
CTGTTGCTACACGTTTTGGATGAAATTAATACAATGAACTCTagctttaa
ctcgaacctctataactggaATGTCTTCTTATTTCGAACAAGTTTAATGG
TCCttttagttaacaatgccttataagccttactccataactcgatattt
ccttaactcgaacagatTTATGTTCCCTGCgcgtgttcgaattatggaat
cTCCACTGTATAAATTTCAGTTTTCTGATTTGTTTACATACAGGAGTCGT
CAATTTTCATCGCTAATTTTTAATACGAaatttactttaatgggataaac
tttcgcggggatgggtctatccgcgaaattcaaaaacttcGCCGGGACTT
GATTTCGCGGATGAGGAGTTCCCTGAGTTTTCGTATAATTTCGCTGACCa
ggattaaattaaatttttctaaagtgattgcaaattttgcaaaatcggGG
TAGCAAACAGAACttctctcaaaattttgatattgtagtatgtgaaaatt
cgaaaaataatgAAGAGACTTTCTTCCAAGCAGCAGGGTTTGAGTAGTCT
GATTTGCGGGACGAAAAACCGACgatagaaatttgaaattttcgcgaatc
gaagaaagatttcaatcatttcgcgggtacttaatttcgcggatgaggcc
cttccaaattttcattgggacttaatttcgcggatttttgcggatgacac
ccaaatccgccagaaatctgcgaaatttaatccccgcgaaagtttatccc
attaaaagtAGGTGACATGACTTGTGCCGTACTCCTAGATTTCAACATTA
CTAACAGAACTTTTGGACGCGtgtattttaaaaacaatttttcttcACCT
TTCatttctaaataaataaaataaataaataagtcaGACCTGAAGTCTGT
TTCCGCCATCAAATTTGAAGATTGCAttgtatttttttatcattgagTTG
ATAAGCAGGTCGGAATATTGTTTATTTCAACTCGTATAAGAATGACCATG
GAAATGTATACTTACTCCATTCACTTTTagtgtattcatgatatgcacca
ttgcaatgtcttctgacattacatcatggaccaaatagctgattggttgt
aagtgacgtaagatcagtcaatacgtcactttcagccaatcagctgttgg
gtatGTGGAAGACATGGTATTCTATTAGTGAGATTTCCACATGGTAGCAA
AAAAGAGTGCACGCTTAAAGCGAATgtatttattgtttattttaacTCGC
ATAAGAATGACCATGGAAATATATACTATAGTCCGTTCGTTTAAATGCGT
ACTCTTTGCTACGGTGTAGAAACCATGTCAGCGTGATTCAGACTAATTCC
CTTGGGACTGGTTTCCACTTGGTagcaaaaaagagtgcacacttcaAGCG
AATGTATTTTAAATTATATTTCAATCCAGGTCGAACTGGCATGTTTGAAA
TTCCCCTACAGCAGGTGGACAACACCTTTCGATCAATTAAAAGCAGTGGT
AGAGGAGCCTTCGCCTACGATACCATCCGAACATAATTATTCTGATGAAC
TTCATCAATTTATTTCACTTTGGTAAGAACTTTCTCTTTTGCTTGGCTAG
TTAGGTTGTTCCATTTAGTATCCATCCAGGGCAGtgaaaatattccaagt
caaaaataattcttgaaaatattgGANTTATCTTTCCAGGTCGAACTGGC
ATGTTTGAAATTCCCATACAGCAGGTGGACAACACCCTTCGATCAATTAA
AAGCAGTGGTAGAGGAGCCTTCGCCTACGATACCACCCGAACATAATTAT
TCTGATGAACTTCATCAATTTATTTCACTTTGGTAAGAACTTTCTCTTTT
GCTTGGCTAGTTAGGTTGTTCCATTTAGTATCCATACAGGGAAgtgacga
accttttcaagccagaaataattcatgaaaataTTGGATACCCCTCGGAG
AAATGGTAGAATTGCAAAAAATGCCCATGGAAATTGAGTCTTTCCCCTGA
AAAGTTCTGGAATAAATTCGACGAGATTTCAAAGAAGggaagtatttaaa
gaggtttctACAAGGTACAGGAAACTTTTTTAGGACTCAAAAACTGACTT
CAATTGATATAAGCGGTTTTGGGTTTTATTTTTTGGGGTAAGGGGTTTTT
CCTGTGACGACGTTTTTTGATCCTAAAAAAGCCTTAGCAAATACCCCAAT
CGCGAAAAATTCTCTAAATACTTCATTCTTTAAAATGGGCCAGGTTTGGT
TGCGTCGAATAAAATATGTCAAGGTCCGAAGGGTTTGTCCCCCTACTTAT
ACTGGTACCTGTCAGCACAGCTTACTATATCTAGCTATATGTACCTACCA
TTATGTTATAGCCGAAGGCTAGAGCCGAATCCCCTATATTTAGGCTTATT
TCCTAATAAAGTTGCGTGGGGTTGCGTGTCCCGCGTGGTTTTCAaacaaa
cgctggattgaaaTTTACCCCCAGAAttcgaaaaatgtaaaaaggAGCTA
ACAAAAAAATGGCTCGATTAAATCAACCATCCGAAAAACGTCgtacattt
taaggcttcactttttctagcttgggaaaggttaaagattcctcTTTAAC
ATATTTGGCTTGATACTCAATTGTACTAACTTTGTCAAGAGAGTCTTTGT
TTGAAAGATCGGGAAAAGCTTTTATTCATGATATATGcaacattgcaatg
tcttccacggactcaatagctgattggttgaaatgaCGTATTGACCAATC
agttgttgggtccgtgatgtaatgtcagaagacatcgcaatggtgcatat
cacgaaTACTTGTATAATCTTGCTCACATTTGCTATTTCGGAAGTATCAT
CGCAGTGTGATAGCTACTCCTATCTAATTATTGAATGGTGAATTATGTCA
AACCTTCTTCCTTGCAATAGAAAATTCTACATAACATGGTTTGAGAGcag
atcattttatttttgcaaaaagatatAGCTCTCGTTTTGCATAATACACG
ATCTCGCTGTTAGTGATTCGCACATGAATACTTCCCCCCCTGTTTGATAT
TCTCAGTATAGGTCAACGAGAAAAGGCTTTGAAAGGATAAACAGTTAAAT
ATTTAAAAGGCACTTGCtgttttttaacgttttttgtgttttaataCTGG
AGAGAGCTGAACTGTGTTATTCGTTTCTTTAAATATTGGAAAGCTCTATC
TACACTGTCAgtgtttttgaaatataatagttTTAGTTTTGAGGGCGATC
TATTCGGGTAGAGAGTTTTTTGAATGtctcttttttaaataaaaacttgt
cGTCTAATCAATTGATTGTATCGATATTTTGTATGAATTTCTGACTTTTC
CtattttcagtttgaagaaGAACTTCCTGGAAAGACCAAAATATGACACT
CTATTGGTACGTTAAGCGAAACAATCTGTGACTAAATATTGTGGCAAGAa
ctcccccccccctagtaTAAATGTTGATGGGTGGAAAGGCTGCCACCAGA
AAAAGCTCAAATCAACCCTGATTTTAGGGGgggattttttaagaaattgc
aacatattttgtcactgattgtagttgATTAGTTATATATATCCGGCCTG
GACTTAACcctattaaaaaaattgaaaatcgcaATTAAGATAAAATTTTC
ATGTTTATTCTTGCCGTCTGCTGATTTTTTACTGGAATGTCATTACTGTC
ATTTTAGACATTTATATCTATTTGCAGCCATCATAGTTTCGACTTTTAGA
CTAgaaatagctttcaaattcaCGTTTCTTTACACGATATTACCTCGCTT
ATCTCCAAGCATCAAACAACAGTCAGAGTTATATACTTATCgtattttgt
tccttttttttcAGACGGACTCATTCATCCTGACTCACGAGAAAACACCG
GTTAACGAAATCGCAGGCTTCGTTCAACCCATCCTGGACCAAGTATGAAT
GACTAAACGTCACATGTCAATCAAATGACGTcatatgacgtaatcttttc
gaAAATGGGAGTGTCTTTACAATTcaagtttttttggcaaattgtGCTGG
CTATGACACTGCTTGGCTTAAATGACGTCACTTTCTATAAGAAATCGAAC
CACAGAAATTCATCGAATGAATATACCTACCAGCCCTCGTGTCGTATAGA
ACTCTATAAAAGCGGACCGGACTTCAAGTTTACTGGGACCGAATGACACC
AATCAGTCTCAAGTCAATATTATGACTCTCACAGCTTTtagaaatatttg
acgtcattcGATCTCGATAAACTCGGGTCCAACCCCCTTGAGTTGATTGG
TTTTATTCAAAGCCTAAAAGGCCTGAGCTTTAAAGACATTTGTTACATTG
TTAGTTCGATGTAAATCGAatattttttatagttttttgtGGAGAAAGCG
AAATGAATTATGGGAATGTTGCATTGCATTGCTTGGCAATGTTAGTGCTT
AGTTTTCATCTTTCGTCAAATCAGCTTTTTCTTGTTAAACGTtgtttagc
tctagtttagacggcccatcttttgccctgcctattctgattgtgaatta
aagtgggctgtctaaagtcaaagCAATGTCCTCTTTTGACGCTAATGCAA
TATTGTCttctttcaaacttttccagcttttccaagcaaagattttaact
accAAGTTTGTGCCCTCTTTCTATCTACTCTAACAATTAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041298XLOC_041298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065909-exon-scaffold_448-1491911889:528577..528855TCONS_00065909-exon-scaffold_448-1491911889:528577..528855Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:528577..528855TCONS_00065909-exon-scaffold_448-1510915933:528577..528855Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:528577..528855TCONS_00065909-exon-scaffold_448-1575043694:528577..528855Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:536285..536375TCONS_00065909-exon-scaffold_448-1491911889:536285..536375Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:536285..536375TCONS_00065909-exon-scaffold_448-1510915933:536285..536375Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:536285..536375TCONS_00065909-exon-scaffold_448-1575043694:536285..536375Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:536562..536613TCONS_00065909-exon-scaffold_448-1491911889:536562..536613Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:536562..536613TCONS_00065909-exon-scaffold_448-1510915933:536562..536613Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:536562..536613TCONS_00065909-exon-scaffold_448-1575043694:536562..536613Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:537220..537333TCONS_00065909-exon-scaffold_448-1491911889:537220..537333Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:537220..537333TCONS_00065909-exon-scaffold_448-1510915933:537220..537333Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:537220..537333TCONS_00065909-exon-scaffold_448-1575043694:537220..537333Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:537616..537735TCONS_00065909-exon-scaffold_448-1491911889:537616..537735Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:537616..537735TCONS_00065909-exon-scaffold_448-1510915933:537616..537735Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:537616..537735TCONS_00065909-exon-scaffold_448-1575043694:537616..537735Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:537884..538003TCONS_00065909-exon-scaffold_448-1491911889:537884..538003Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:537884..538003TCONS_00065909-exon-scaffold_448-1510915933:537884..538003Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:537884..538003TCONS_00065909-exon-scaffold_448-1575043694:537884..538003Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:538347..538398TCONS_00065909-exon-scaffold_448-1491911889:538347..538398Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:538347..538398TCONS_00065909-exon-scaffold_448-1510915933:538347..538398Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:538347..538398TCONS_00065909-exon-scaffold_448-1575043694:538347..538398Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:538687..538814TCONS_00065909-exon-scaffold_448-1491911889:538687..538814Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:538687..538814TCONS_00065909-exon-scaffold_448-1510915933:538687..538814Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:538687..538814TCONS_00065909-exon-scaffold_448-1575043694:538687..538814Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:539461..539538TCONS_00065909-exon-scaffold_448-1491911889:539461..539538Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:539461..539538TCONS_00065909-exon-scaffold_448-1510915933:539461..539538Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:539461..539538TCONS_00065909-exon-scaffold_448-1575043694:539461..539538Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:541306..541340TCONS_00065909-exon-scaffold_448-1491911889:541306..541340Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:541306..541340TCONS_00065909-exon-scaffold_448-1510915933:541306..541340Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:541306..541340TCONS_00065909-exon-scaffold_448-1575043694:541306..541340Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:541601..541708TCONS_00065909-exon-scaffold_448-1491911889:541601..541708Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:541601..541708TCONS_00065909-exon-scaffold_448-1510915933:541601..541708Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:541601..541708TCONS_00065909-exon-scaffold_448-1575043694:541601..541708Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:543237..543282TCONS_00065909-exon-scaffold_448-1491911889:543237..543282Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:543237..543282TCONS_00065909-exon-scaffold_448-1510915933:543237..543282Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:543237..543282TCONS_00065909-exon-scaffold_448-1575043694:543237..543282Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1491911889:543741..544571TCONS_00065909-exon-scaffold_448-1491911889:543741..544571Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1510915933:543741..544571TCONS_00065909-exon-scaffold_448-1510915933:543741..544571Clytia hemisphaericaexon
TCONS_00065909-exon-scaffold_448-1575043694:543741..544571TCONS_00065909-exon-scaffold_448-1575043694:543741..544571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:528577..544571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.2686	22.7822	56.9295	63.7571	91.8825	62.663	64.3964	62.2537	44.4893	52.7469	42.5007	46.0032	38.0807	38.8687	42.2661	51.586	57.812	56.7016	30.1097	28.1347	58.695	57.9243	56.8042	54.1555	23.178	31.1062	45.0135	39.8544	40.3957	37.1248
Blast
[Close]
BLAST of TCONS_00065909 vs. Swiss-Prot (Human)
Match: MP2K6 (Dual specificity mitogen-activated protein kinase kinase 6 OS=Homo sapiens GN=MAP2K6 PE=1 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 6.823e-130
Identity = 196/333 (58.86%), Postives = 243/333 (72.97%), Query Frame = 3 
Query:  303 KGEKKRP-LKIVMPPVHQTQPQPVNAP-RNLSDRTTLTVNSQDYPCSTDDLIEICELGRGAYGVVEKMRHKQTNIEMAVKRIRHTVNTTEQGRLLMDLDVSMRLSNYPYAIQFYGALFKEGDVWICMELMKTSFDKFYKKVAEQEGALIPEKVLGKISFAVVSALEYLHSKMKVIHRDVKPSNILVNDNGEIKLCDFGISGQLVDSLAKTLTAGCKPYMAPERINPTKGQHGYDIRSDVWSLGITMVELACLKFPYSRWTTPFDQLKAVVEEPSPTIPPEHNYSDELHQFISLCLKKNFLERPKYDTLLTDSFILTHEKTPVNEIAGFVQPIL 1295
            KG+K+ P LKI  P     QPQ  + P R+L  +  +++ +Q++    DDL  I ELGRGAYGVVEKMRH  +   MAVKRIR TVN+ EQ RLLMDLD+SMR  + P+ + FYGALF+EGDVWICMELM TS DKFYK+V ++ G  IPE +LGKI+ ++V ALE+LHSK+ VIHRDVKPSN+L+N  G++K+CDFGISG LVDS+AKT+ AGCKPYMAPERINP   Q GY ++SD+WSLGITM+ELA L+FPY  W TPF QLK VVEEPSP +P +  +S E   F S CLKKN  ERP Y  L+   F   HE +   ++A FV+ IL
Sbjct:    5 KGKKRNPGLKI--PKEAFEQPQTSSTPPRDLDSKACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPAD-KFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE-SKGTDVASFVKLIL 332
The following BLAST results are available for this feature:
BLAST of TCONS_00065909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MP2K66.823e-13058.86Dual specificity mitogen-activated protein kinase ... [more]
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