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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065902 ID=TCONS_00065902|Name=TCONS_00065902|organism=Clytia hemisphaerica|type=transcript|length=1932bp
ttttgtgaTCAAATCATAAAATTATCAATTTGGTCACACCTTTTGACTTT
CAACGCATCTGGAGATGCTCGTGGACAAGATGATATTGTTCTTGGCcact
tttttgctgattttagCAACTAGCGAGGGCATGCGCTCTCACCCACCCGC
TGACGGGACTTTCCTTCCGGAAATTCTCAACCAAAAAGAGGTTTCACAAC
TTAAATTAATGGCTCCGGAAAACTTCAATCACTCTTCTGAATATCTGGAA
ACTCAATCCAAATTACGTTTGTCATTCCAAAACATCATCGAATACTTTAT
TCGCGAAAATATCGATTCGATGCGATTACTTGAGAACGGGCAGcgtaaaa
tgaaattaattaaaGAGATCAATGTCCTCACACTCGAATTCTCCGCTCTT
ATTGACCGTTATTTTGGCGACGGTTTACCGCTATGGCAACGAGAGGTCCT
TAGAGACCAGATGGATAAAACGAGTGATCATATCTTATCTCTTTATCAAT
CGCTACAGAATCATTATGATGATAGTTACCACACCCTTATCGAACAAACT
CAACCCAAACGTACTGACGGCGTTCTTATTCAAGGTGTTTATATCACGGA
TCCAGCATTTATTAAACTTCGCCTTGAGGTGGAGGAATTACGGCGTAAAG
ACCTTCCAGTGGCGCAAGACGTTCTGGATGAACTGCACTCGATGGTGACT
GAACTGGTTGACCGTGAGAAATCTTCTTTGGAGAATTTGAAATTCGATTA
TGTGTTTCAATGGAATCGCATCATTGAAGAACGTGCCAAATCCAAAACAA
GCGATGCTGACGTATTCCGAAATGAATTTGTTTTCAGATTCAAACAGTTA
GAAAGAACGGAACTAGCTGTTTTATTCTCTGTCAAGAAAAGTGCATTGCT
TGCACAAATAGACGAACTATTGGTCATTGGtgaaaaacacaaacaaaacg
tgattgacattcaaaaagatttatcagataagaaaatcatcatcatcgGT
CAATCTGCTAAAAGTGTTGTCTCCTTATTCCAACAAATTTACGATTCTAA
AATCAAGAACCCGATCTTCGAAACCAAGCTTCGTAATGCTGTCGATAAAA
TTACTTACTCGCTAAAGAAGgaatcgaaaaaatcaaaaattaagagTAAA
CACATGTCGAAATGGAATAAATATTTCGAACATACGATGAACGGTCGTTA
TGAAGCAGCCCGCAAGGCTGAGAAACGCTCTTTGAAATTACTTAGAAAAT
TATTGGAAGCAAAGCACATTCAAAATAAGAACGCCCGtaacaaaaaaagg
aaaatggcaTCACCTCCCTCGACAAGAAAATCAGGATCCAATCAACATGT
GAAATCTAAAGCAATTGGCAACTCCAAATCTGGCAATCCGAAATTTTCCA
CAAAGACCGACACCGAATCTAAATCTTTCACCGGAATGCTTGCCAAGCTT
TATGATGAAGCTTTAGAATTGAGTTGGACTGCTTTCACAAATACCTTAGA
TCTCATCCCTGATTCGGAGTTTGCTAACGAAGTGATTATAGCAACATTCT
CAACCATCAAAACCGTTTCCAGAGCAACAGCAAAAGCTTTTGATGACACA
GTTGAAATGGCGGCTAACGGACTTCACTCGACAAACGAATATGCTTTAAA
GGTTTATCATGCGGCTATGGAAAATGCTCAAACCTTTTACGGTCACGGCG
TTAACGCCCTCAGCGTAACAGCAGACAAGGGTGTTTCTGGATTCTGGTGG
GCGTGTCAACAAATGGACGAAACATTAGACACCTTGGACTCGATTCATGA
TATTTTACATGAACTCACAAAACAAACCGTTTACAGTGGCCTGGAAAACG
CAAAcgaatttcttcaaattttgtcaACTGGTACACAACGAATTCTCGAT
GGAGTTTACGACTACTTTTCTCTTCAATGACG Run BLAST on NCBI protein sequence of TCONS_00065902-protein >TCONS_00065902-protein ID=TCONS_00065902-protein|Name=TCONS_00065902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp
MLVDKMILFLATFLLILATSEGMRSHPPADGTFLPEILNQKEVSQLKLMA
PENFNHSSEYLETQSKLRLSFQNIIEYFIRENIDSMRLLENGQRKMKLIK
EINVLTLEFSALIDRYFGDGLPLWQREVLRDQMDKTSDHILSLYQSLQNH
YDDSYHTLIEQTQPKRTDGVLIQGVYITDPAFIKLRLEVEELRRKDLPVA
QDVLDELHSMVTELVDREKSSLENLKFDYVFQWNRIIEERAKSKTSDADV
FRNEFVFRFKQLERTELAVLFSVKKSALLAQIDELLVIGEKHKQNVIDIQ
KDLSDKKIIIIGQSAKSVVSLFQQIYDSKIKNPIFETKLRNAVDKITYSL
KKESKKSKIKSKHMSKWNKYFEHTMNGRYEAARKAEKRSLKLLRKLLEAK
HIQNKNARNKKRKMASPPSTRKSGSNQHVKSKAIGNSKSGNPKFSTKTDT
ESKSFTGMLAKLYDEALELSWTAFTNTLDLIPDSEFANEVIIATFSTIKT
VSRATAKAFDDTVEMAANGLHSTNEYALKVYHAAMENAQTFYGHGVNALS
VTADKGVSGFWWACQQMDETLDTLDSIHDILHELTKQTVYSGLENANEFL
QILSTGTQRILDGVYDYFSLQ Run BLAST on NCBI transcript from alignment at scaffold_448:267421..270255+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065902 ID=TCONS_00065902|Name=TCONS_00065902|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at scaffold_448:267421..270255+ (Clytia hemisphaerica)
ttttgtgaTCAAATCATAAAATTATCAATTTGGTCACACCTTTTGACTTT
CAACGCATCTGGAGATGCTCGTGGACAAGATGATATTGTTCTTGGCcact
tttttgctgattttagCAACTAGCGAGGTAAGATAGGCTCAATATATagt
gtttctttaaaaaaaaattcattttttttttattttcttgtgttGTGCTG
ATTTGTCGGTTTGTCACTTTTCTTCTTGTCACGTGAGTTGGTGATATGAT
TTCTTTTGAtcttaattagctttttcagatctTTTACTTTTGAGATTTGT
CAACACAATGTTTTGTAACTAATACCTTAAGTAGTTTTTTCGTAAGAGGC
TCATTTTCTAGTCTACACAAAGGACAGCCCTAGGTTTTTAGGCCTGAGTA
GGTGTTTTGTATCTAACTTAAGTAGTTTTTTCGCAAGAGATTGGTTTTCT
AGCACTCTTTAAGTCCCTGACAATGAGTTTGGATTGTAATTATGTACATT
TTACTGTAAGTTATTGTATTCAAAATAGCCGAGCAAGCAAACAATTCTCG
TGTTAAATGTAATACTTTTAAAGTCACTCTCGTTTATACTTGACAAAGAC
TAACGTTATTAACtaccattcaaaatttttggatagaATGTCTCAAATTC
TAAGGAGTGTTGTATACATTTTGACCGAGAAAGAAAAGTTAGAACAGATC
CAATGTGAAGTAAATCCTTTAAACTTGTCATCTCATTCGAGTATAGAATG
ACTGAAAGAAAAAGCTAACTTCTTTGTTTAAGTAATAGATATTGAATTCC
CAAAGATAAAAGTCGCTTTTCGTACAAGAATTATGTTTTGCTTTTATTGT
GTTCCGGACACACTATATATCTCAAGTTATGTATGCAATCTTAAATAGCA
ATAAACGTATCTGTATTGTAACTGTTTTGGAAATATTGCTGCCTGTTGAA
TGAAAATACTTTATACGTGATCCATATAAATAATGCTTAGCCATAAAATC
AACtagatatttttctttcatttattttaGGGCATGCGCTCTCACCCACC
CGCTGACGGGACTTTCCTTCCGGAAATTCTCAACCAAAAAGAGGTTTCAC
AACTTAAATTAATGGCTCCGGAAAACTTCAATCACTCTTCTGAATATCTG
GAAACTCAATCCAAATTACGTTTGTCATTCCAAAACATCATCGAATACTT
TATTCGCGAAAATATCGATTCGATGCGATTACTTGAGAACGGGCAGcgta
aaatgaaattaattaaaGAGATCAATGTCCTCACACTCGAATTCTCCGCT
CTTATTGACCGTTATTTTGGCGACGGTTTACCGCTATGGCAACGAGAGGT
CCTTAGAGACCAGATGGATAAAACGAGTGATCATATCTTATCTCTTTATC
AATCGCTACAGAATCATTATGATGATAGTTACCACACCCTTATCGAACAA
ACTCAACCCAAACGTACTGACGGCGTTCTTATTCAAGGTGTTTATATCAC
GGATCCAGCATTTATTAAACTTCGCCTTGAGGTGGAGGAATTACGGCGTA
AAGACCTTCCAGTGGCGCAAGACGTTCTGGATGAACTGCACTCGATGGTG
ACTGAACTGGTTGACCGTGAGAAATCTTCTTTGGAGAATTTGAAATTCGA
TTATGTGTTTCAATGGAATCGCATCATTGAAGAACGTGCCAAATCCAAAA
CAAGCGATGCTGACGTATTCCGAAATGAATTTGTTTTCAGATTCAAACAG
TTAGAAAGAACGGAACTAGCTGTTTTATTCTCTGTCAAGAAAAGTGCATT
GCTTGCACAAATAGACGAACTATTGGTCATTGGtgaaaaacacaaacaaa
acgtgattgacattcaaaaagatttatcagataagaaaatcatcatcatc
gGTCAATCTGCTAAAAGTGTTGTCTCCTTATTCCAACAAATTTACGATTC
TAAAATCAAGAACCCGATCTTCGAAACCAAGCTTCGTAATGCTGTCGATA
AAATTACTTACTCGCTAAAGAAGgaatcgaaaaaatcaaaaattaagagT
AAACACATGTCGAAATGGAATAAATATTTCGAACATACGATGAACGGTCG
TTATGAAGCAGCCCGCAAGGCTGAGAAACGCTCTTTGAAATTACTTAGAA
AATTATTGGAAGCAAAGCACATTCAAAATAAGAACGCCCGtaacaaaaaa
aggaaaatggcaTCACCTCCCTCGACAAGAAAATCAGGATCCAATCAACA
TGTGAAATCTAAAGCAATTGGCAACTCCAAATCTGGCAATCCGAAATTTT
CCACAAAGACCGACACCGAATCTAAATCTTTCACCGGAATGCTTGCCAAG
CTTTATGATGAAGCTTTAGAATTGAGTTGGACTGCTTTCACAAATACCTT
AGATCTCATCCCTGATTCGGAGTTTGCTAACGAAGTGATTATAGCAACAT
TCTCAACCATCAAAACCGTTTCCAGAGCAACAGCAAAAGCTTTTGATGAC
ACAGTTGAAATGGCGGCTAACGGACTTCACTCGACAAACGAATATGCTTT
AAAGGTTTATCATGCGGCTATGGAAAATGCTCAAACCTTTTACGGTCACG
GCGTTAACGCCCTCAGCGTAACAGCAGACAAGGGTGTTTCTGGATTCTGG
TGGGCGTGTCAACAAATGGACGAAACATTAGACACCTTGGACTCGATTCA
TGATATTTTACATGAACTCACAAAACAAACCGTTTACAGTGGCCTGGAAA
ACGCAAAcgaatttcttcaaattttgtcaACTGGTACACAACGAATTCTC
GATGGAGTTTACGACTACTTTTCTCTTCAATGACG Coding sequence (CDS) from alignment at scaffold_448:267421..270255+ >TCONS_00065902 ID=TCONS_00065902|Name=TCONS_00065902|organism=Clytia hemisphaerica|type=CDS|length=3732bp|location=Sequence derived from alignment at scaffold_448:267421..270255+ (Clytia hemisphaerica)
ATGCTCGTGGACAAGATGATATTGTTCTTGGCcacttttttgctgatttt
agCAACTAGCGAGGGCATGCGCTCTCACCCACCCGCTGACGGGACTTTCC
TTCCGGAAATTCTCAACCAAAAAGAGGTTTCACAACTTAAATTAATGGCT
CCGGAAAACTTCAATCACTCTTCTGAATATCTGGAAACTCAATCCAAATT
ACGTTTGTCATTCCAAAACATCATCGAATACTTTATTCGCGAAAATATCG
ATTCGATGCGATTACTTGAGAACGGGCAGcgtaaaatgaaattaattaaa
GAGATCAATGTCCTCACACTCGAATTCTCCGCTCTTATTGACCGTTATTT
TGGCGACGGTTTACCGCTATGGCAACGAGAGGTCCTTAGAGACCAGATGG
ATAAAACGAGTGATCATATCTTATCTCTTTATCAATCGCTACAGAATCAT
TATGATGATAGTTACCACACCCTTATCGAACAAACTCAACCCAAACGTAC
TGACGGCGTTCTTATTCAAGGTGTTTATATCACGGATCCAGCATTTATTA
AACTTCGCCTTGAGGTGGAGGAATTACGGCGTAAAGACCTTCCAGTGGCG
CAAGACGTTCTGGATGAACTGCACTCGATGGTGACTGAACTGGTTGACCG
TGAGAAATCTTCTTTGGAGAATTTGAAATTCGATTATGTGTTTCAATGGA
ATCGCATCATTGAAGAACGTGCCAAATCCAAAACAAGCGATGCTGACGTA
TTCCGAAATGAATTTGTTTTCAGATTCAAACAGTTAGAAAGAACGGAACT
AGCTGTTTTATTCTCTGTCAAGAAAAGTGCATTGCTTGCACAAATAGACG
AACTATTGGTCATTGGtgaaaaacacaaacaaaacgtgattgacattcaa
aaagatttatcagataagaaaatcatcatcatcgGTCAATCTGCTAAAAG
TGTTGTCTCCTTATTCCAACAAATTTACGATTCTAAAATCAAGAACCCGA
TCTTCGAAACCAAGCTTCGTAATGCTGTCGATAAAATTACTTACTCGCTA
AAGAAGgaatcgaaaaaatcaaaaattaagagTAAACACATGTCGAAATG
GAATAAATATTTCGAACATACGATGAACGGTCGTTATGAAGCAGCCCGCA
AGGCTGAGAAACGCTCTTTGAAATTACTTAGAAAATTATTGGAAGCAAAG
CACATTCAAAATAAGAACGCCCGtaacaaaaaaaggaaaatggcaTCACC
TCCCTCGACAAGAAAATCAGGATCCAATCAACATGTGAAATCTAAAGCAA
TTGGCAACTCCAAATCTGGCAATCCGAAATTTTCCACAAAGACCGACACC
GAATCTAAATCTTTCACCGGAATGCTTGCCAAGCTTTATGATGAAGCTTT
AGAATTGAGTTGGACTGCTTTCACAAATACCTTAGATCTCATCCCTGATT
CGGAGTTTGCTAACGAAGTGATTATAGCAACATTCTCAACCATCAAAACC
GTTTCCAGAGCAACAGCAAAAGCTTTTGATGACACAGTTGAAATGGCGGC
TAACGGACTTCACTCGACAAACGAATATGCTTTAAAGGTTTATCATGCGG
CTATGGAAAATGCTCAAACCTTTTACGGTCACGGCGTTAACGCCCTCAGC
GTAACAGCAGACAAGGGTGTTTCTGGATTCTGGTGGGCGTGTCAACAAAT
GGACGAAACATTAGACACCTTGGACTCGATTCATGATATTTTACATGAAC
TCACAAAACAAACCGTTTACAGTGGCCTGGAAAACGCAAAcgaatttctt
caaattttgtcaACTGGTACACAACGAATTCTCGATGGAGTTTACGACTA
CTTTTCTCTTCAATGAATGCTCGTGGACAAGATGATATTGTTCTTGGCca
cttttttgctgattttagCAACTAGCGAGGGCATGCGCTCTCACCCACCC
GCTGACGGGACTTTCCTTCCGGAAATTCTCAACCAAAAAGAGGTTTCACA
ACTTAAATTAATGGCTCCGGAAAACTTCAATCACTCTTCTGAATATCTGG
AAACTCAATCCAAATTACGTTTGTCATTCCAAAACATCATCGAATACTTT
ATTCGCGAAAATATCGATTCGATGCGATTACTTGAGAACGGGCAGcgtaa
aatgaaattaattaaaGAGATCAATGTCCTCACACTCGAATTCTCCGCTC
TTATTGACCGTTATTTTGGCGACGGTTTACCGCTATGGCAACGAGAGGTC
CTTAGAGACCAGATGGATAAAACGAGTGATCATATCTTATCTCTTTATCA
ATCGCTACAGAATCATTATGATGATAGTTACCACACCCTTATCGAACAAA
CTCAACCCAAACGTACTGACGGCGTTCTTATTCAAGGTGTTTATATCACG
GATCCAGCATTTATTAAACTTCGCCTTGAGGTGGAGGAATTACGGCGTAA
AGACCTTCCAGTGGCGCAAGACGTTCTGGATGAACTGCACTCGATGGTGA
CTGAACTGGTTGACCGTGAGAAATCTTCTTTGGAGAATTTGAAATTCGAT
TATGTGTTTCAATGGAATCGCATCATTGAAGAACGTGCCAAATCCAAAAC
AAGCGATGCTGACGTATTCCGAAATGAATTTGTTTTCAGATTCAAACAGT
TAGAAAGAACGGAACTAGCTGTTTTATTCTCTGTCAAGAAAAGTGCATTG
CTTGCACAAATAGACGAACTATTGGTCATTGGtgaaaaacacaaacaaaa
cgtgattgacattcaaaaagatttatcagataagaaaatcatcatcatcg
GTCAATCTGCTAAAAGTGTTGTCTCCTTATTCCAACAAATTTACGATTCT
AAAATCAAGAACCCGATCTTCGAAACCAAGCTTCGTAATGCTGTCGATAA
AATTACTTACTCGCTAAAGAAGgaatcgaaaaaatcaaaaattaagagTA
AACACATGTCGAAATGGAATAAATATTTCGAACATACGATGAACGGTCGT
TATGAAGCAGCCCGCAAGGCTGAGAAACGCTCTTTGAAATTACTTAGAAA
ATTATTGGAAGCAAAGCACATTCAAAATAAGAACGCCCGtaacaaaaaaa
ggaaaatggcaTCACCTCCCTCGACAAGAAAATCAGGATCCAATCAACAT
GTGAAATCTAAAGCAATTGGCAACTCCAAATCTGGCAATCCGAAATTTTC
CACAAAGACCGACACCGAATCTAAATCTTTCACCGGAATGCTTGCCAAGC
TTTATGATGAAGCTTTAGAATTGAGTTGGACTGCTTTCACAAATACCTTA
GATCTCATCCCTGATTCGGAGTTTGCTAACGAAGTGATTATAGCAACATT
CTCAACCATCAAAACCGTTTCCAGAGCAACAGCAAAAGCTTTTGATGACA
CAGTTGAAATGGCGGCTAACGGACTTCACTCGACAAACGAATATGCTTTA
AAGGTTTATCATGCGGCTATGGAAAATGCTCAAACCTTTTACGGTCACGG
CGTTAACGCCCTCAGCGTAACAGCAGACAAGGGTGTTTCTGGATTCTGGT
GGGCGTGTCAACAAATGGACGAAACATTAGACACCTTGGACTCGATTCAT
GATATTTTACATGAACTCACAAAACAAACCGTTTACAGTGGCCTGGAAAA
CGCAAAcgaatttcttcaaattttgtcaACTGGTACACAACGAATTCTCG
ATGGAGTTTACGACTACTTTTCTCTTCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065902-exon-scaffold_448-1491911889:267421..267547 | TCONS_00065902-exon-scaffold_448-1491911889:267421..267547 | Clytia hemisphaerica | exon |
| TCONS_00065902-exon-scaffold_448-1510915933:267421..267547 | TCONS_00065902-exon-scaffold_448-1510915933:267421..267547 | Clytia hemisphaerica | exon |
| TCONS_00065902-exon-scaffold_448-1575043694:267421..267547 | TCONS_00065902-exon-scaffold_448-1575043694:267421..267547 | Clytia hemisphaerica | exon |
| TCONS_00065902-exon-scaffold_448-1491911889:268451..270255 | TCONS_00065902-exon-scaffold_448-1491911889:268451..270255 | Clytia hemisphaerica | exon |
| TCONS_00065902-exon-scaffold_448-1510915933:268451..270255 | TCONS_00065902-exon-scaffold_448-1510915933:268451..270255 | Clytia hemisphaerica | exon |
| TCONS_00065902-exon-scaffold_448-1575043694:268451..270255 | TCONS_00065902-exon-scaffold_448-1575043694:268451..270255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_448 | supercontig | scaffold_448:267421..270255 + |
Blast
The following BLAST results are available for this feature:
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