TCONS_00065879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065879
Unique NameTCONS_00065879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065879 ID=TCONS_00065879|Name=TCONS_00065879|organism=Clytia hemisphaerica|type=transcript|length=653bp
tatgattcaAAGCAGCGAAAAGAAAGATATTTATccgaaaaacaaaagaa
aaaatcaaaatctcaaGAAACAGACACTGACATTAATATGAGTAAAAACA
TGAAAGATTTTCAGAAATCCATGAAATTCTCAATTGCTCAATGTGAAACA
TGTTTTGAATCGTGGCCGATAAAAAGTACCTCAAAAGGAAACTCAGTTGA
TGATTATATTTGTACGCGTTGCAAAAGAGACAAAGGAACTCCAAAAAAGT
TCAGTGCTGAGAATAATATGAAACCAAGTCCAGTGCCAGAAGCACTCAAA
GGTCTTACACAAATTGAAGAAATGCTTATTGCTAGAGCTTTTCCTGTAAT
GCAAGTGTACACCCGACCAAGAGGAGGTCAGAGAGCTTATAAAGGTCACG
TTTTGAATTTGCCTCACAATGTACAAAAAATTGCAGATGTTCTGCCAAGA
GAGCCTAGTGACATTCCtataatgatttttaaaataaatgggAAAAATAA
TACCTCAAAAGAACTTGTCGTTAGGCGTGAAAAGGTTTTACAGTCATTAT
TATGGCTGACAGGAAAAAATGAACAAGGTGAACCTAATAATTTTCTATAT
AGTGAAATCAATATAGATATGGAAAGACTACAAAAGCTGCCTGAAAACGG
ATT
Run BLAST on NCBI

protein sequence of TCONS_00065879-protein

>TCONS_00065879-protein ID=TCONS_00065879-protein|Name=TCONS_00065879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
YDSKQRKERYLSEKQKKKSKSQETDTDINMSKNMKDFQKSMKFSIAQCET
CFESWPIKSTSKGNSVDDYICTRCKRDKGTPKKFSAENNMKPSPVPEALK
GLTQIEEMLIARAFPVMQVYTRPRGGQRAYKGHVLNLPHNVQKIADVLPR
EPSDIPIMIFKINGKNNTSKELVVRREKVLQSLLWLTGKNEQGEPNNFLY
SEINIDMERLQKLPENG
Run BLAST on NCBI

transcript from alignment at scaffold_447:318586..319238

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065879 ID=TCONS_00065879|Name=TCONS_00065879|organism=Clytia hemisphaerica|type=transcript|length=653bp|location=Sequence derived from alignment at scaffold_447:318586..319238 (Clytia hemisphaerica)
AATCCGTTTTCAGGCAGCTTTTGTAGTCTTTCCATATCTATATTGATTTC
ACTATATAGAAAATTATTAGGTTCACCTTGTTCATTTTTTCCTGTCAGCC
ATAATAATGACTGTAAAACCTTTTCACGCCTAACGACAAGTTCTTTTGAG
GTATTATTTTTcccatttattttaaaaatcattataGGAATGTCACTAGG
CTCTCTTGGCAGAACATCTGCAATTTTTTGTACATTGTGAGGCAAATTCA
AAACGTGACCTTTATAAGCTCTCTGACCTCCTCTTGGTCGGGTGTACACT
TGCATTACAGGAAAAGCTCTAGCAATAAGCATTTCTTCAATTTGTGTAAG
ACCTTTGAGTGCTTCTGGCACTGGACTTGGTTTCATATTATTCTCAGCAC
TGAACTTTTTTGGAGTTCCTTTGTCTCTTTTGCAACGCGTACAAATATAA
TCATCAACTGAGTTTCCTTTTGAGGTACTTTTTATCGGCCACGATTCAAA
ACATGTTTCACATTGAGCAATTGAGAATTTCATGGATTTCTGAAAATCTT
TCATGTTTTTACTCATATTAATGTCAGTGTCTGTTTCttgagattttgat
tttttcttttgtttttcggATAAATATCTTTCTTTTCGCTGCTTtgaatc
ata

Coding sequence (CDS) from alignment at scaffold_447:318586..319238

>TCONS_00065879 ID=TCONS_00065879|Name=TCONS_00065879|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_447:318586..319238 (Clytia hemisphaerica)
TCCGTTTTCAGGCAGCTTTTGTAGTCTTTCCATATCTATATTGATTTCAC
TATATAGAAAATTATTAGGTTCACCTTGTTCATTTTTTCCTGTCAGCCAT
AATAATGACTGTAAAACCTTTTCACGCCTAACGACAAGTTCTTTTGAGGT
ATTATTTTTcccatttattttaaaaatcattataGGAATGTCACTAGGCT
CTCTTGGCAGAACATCTGCAATTTTTTGTACATTGTGAGGCAAATTCAAA
ACGTGACCTTTATAAGCTCTCTGACCTCCTCTTGGTCGGGTGTACACTTG
CATTACAGGAAAAGCTCTAGCAATAAGCATTTCTTCAATTTGTGTAAGAC
CTTTGAGTGCTTCTGGCACTGGACTTGGTTTCATATTATTCTCAGCACTG
AACTTTTTTGGAGTTCCTTTGTCTCTTTTGCAACGCGTACAAATATAATC
ATCAACTGAGTTTCCTTTTGAGGTACTTTTTATCGGCCACGATTCAAAAC
ATGTTTCACATTGAGCAATTGAGAATTTCATGGATTTCTGAAAATCTTTC
ATGTTTTTACTCATATTAATGTCAGTGTCTGTTTCttgagattttgattt
tttcttttgtttttcggATAAATATCTTTCTTTTCGCTGCTTtgaatcat
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041277XLOC_041277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065879-exon-scaffold_447-1491911889:318586..319238TCONS_00065879-exon-scaffold_447-1491911889:318586..319238Clytia hemisphaericaexon
TCONS_00065879-exon-scaffold_447-1510915933:318586..319238TCONS_00065879-exon-scaffold_447-1510915933:318586..319238Clytia hemisphaericaexon
TCONS_00065879-exon-scaffold_447-1575043694:318586..319238TCONS_00065879-exon-scaffold_447-1575043694:318586..319238Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065879-proteinTCONS_00065879-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:318586..319238 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93342	1.50955	0.626381	0.894961	1.18532	1.11835	0.672749	0.673224	0.968372	1.02375	1.16782	2.02856	1.02454	0.734751	0.430882	0.300291	0.299921	0.235258	1.20764	0.377267	0.878374	1.16875	0.183235	0.21928	0.600415	0.511224	0.109565	0.818518	0.735094	0.411288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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