TCONS_00065876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065876
Unique NameTCONS_00065876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065876 ID=TCONS_00065876|Name=TCONS_00065876|organism=Clytia hemisphaerica|type=transcript|length=852bp
CTGTACCCAAAAACTTTTCTGTCACCATATAAATTCTGGATTTTCTATCA
GAGCTATCTTATCACAGCACTAAATTCtgctaatttcaatttttcacaaa
ttaaatttgtgcATGTCAGATGTTACATTTTTCATGACAGACTGAAATAC
TTAATTatttcaacatgacatcctaactagcaaaaggtctatctaTTTAA
TTTTCTATGCGTACATGTAATTTTCCTGTGCTTGGCTGGTACGTTACATG
CTGACAGTCAGGACAGGTTGTTTTTTGTAGCAGTGAGTCTGTTGAAGAGG
GTCGGGCTGTAAGACAGCAGCCTGAGAGTGATGAGAGGGAGAATctttgg
agtttttttaaactAACCAGGAAACGCTGTTTATTCTCACCGATAAccta
aaaatggttttcaaacCGTACCAAAAACTTTAGTCAACTGCATATTATGT
TGACTAAAATTTTTGGTATGGCTTGAAAACCTGTTTCAGGTTATCGTGAG
ATattaaaagtgtcagaattattgattataATGGTATGTTATTATTCTAA
AAATAGtgtcaaaattctttcaaaaaggTTATATTGCTGGGTATACTTTT
GAGCAGAGTTCCTGCCTTTAGTGTTACTGTTGTATTCATAGAAAAGGCTG
TTCACTTAGCCACAATGAGACCAGAGTAATCAAGTTCCTTAACAAGTAGT
CTGGaagtactaaaataaaaaagcaaaaagtatttaggtggaaccaaaat
agaaaaaatatttcttaccttGAATGAAACAGAACAGGCTAGCAAAAAGC
CACCAACCTGCATAGGGAAAACTGAATAATCCTTGTAAACTTTTTATGAT
tg
Run BLAST on NCBI

transcript from alignment at scaffold_447:290914..291765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065876 ID=TCONS_00065876|Name=TCONS_00065876|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at scaffold_447:290914..291765 (Clytia hemisphaerica)
caATCATAAAAAGTTTACAAGGATTATTCAGTTTTCCCTATGCAGGTTGG
TGGCTTTTTGCTAGCCTGTTCTGTTTCATTCaaggtaagaaatatttttt
ctattttggttccacctaaatactttttgcttttttattttagtacttCC
AGACTACTTGTTAAGGAACTTGATTACTCTGGTCTCATTGTGGCTAAGTG
AACAGCCTTTTCTATGAATACAACAGTAACACTAAAGGCAGGAACTCTGC
TCAAAAGTATACCCAGCAATATAAcctttttgaaagaattttgacaCTAT
TTTTAGAATAATAACATACCATtataatcaataattctgacacttttaat
ATCTCACGATAACCTGAAACAGGTTTTCAAGCCATACCAAAAATTTTAGT
CAACATAATATGCAGTTGACTAAAGTTTTTGGTACGgtttgaaaaccatt
tttaggTTATCGGTGAGAATAAACAGCGTTTCCTGGTTagtttaaaaaaa
ctccaaagATTCTCCCTCTCATCACTCTCAGGCTGCTGTCTTACAGCCCG
ACCCTCTTCAACAGACTCACTGCTACAAAAAACAACCTGTCCTGACTGTC
AGCATGTAACGTACCAGCCAAGCACAGGAAAATTACATGTACGCATAGAA
AATTAAAtagatagaccttttgctagttaggatgtcatgttgaaatAATT
AAGTATTTCAGTCTGTCATGAAAAATGTAACATCTGACATgcacaaattt
aatttgtgaaaaattgaaattagcaGAATTTAGTGCTGTGATAAGATAGC
TCTGATAGAAAATCCAGAATTTATATGGTGACAGAAAAGTTTTTGGGTAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041274XLOC_041274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065876-exon-scaffold_447-1491911889:290914..291765TCONS_00065876-exon-scaffold_447-1491911889:290914..291765Clytia hemisphaericaexon
TCONS_00065876-exon-scaffold_447-1510915933:290914..291765TCONS_00065876-exon-scaffold_447-1510915933:290914..291765Clytia hemisphaericaexon
TCONS_00065876-exon-scaffold_447-1575043694:290914..291765TCONS_00065876-exon-scaffold_447-1575043694:290914..291765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:290914..291765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.909936	0.609737	0.907614	0.858934	0.631584	1.18009	0.899732	1.44467	0.287366	0.806954	0.658052	0.536389	0.615451	0.916268	0.682485	0.756017	1.28998	0.742494	0.803573	0.493871	0.323959	0.578591	0.120722	0.340705	0.98652	1.86273	0.35671	0.568608	0.292518	0.36936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top