TCONS_00065875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065875
Unique NameTCONS_00065875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065875 ID=TCONS_00065875|Name=TCONS_00065875|organism=Clytia hemisphaerica|type=transcript|length=450bp
GTCGGTCGGCCAGTCGGCACTGAAAAACATCAAACAAATTTGCTCTGAAC
ATGGGCTTCTCCAGACGACAAGAATCATTGAGTGCACAATCCCCAGTACG
ATTAAAATTGTGCGGTCGGCACCGAAAAACGTCGGAAAAATGAGCTCTGT
ACGAGTACGATTCAAATTGTGAGATTTTAGTCACCATTATTCCTGGTAAG
AGAGTTGTGAAGTGTATTGTCTGTGGAAAGTCTCAAAAATTAGAGGACAT
TAAAACACAGCTACACGCCGAACTCCAAGTAGGTGATGTCAAACTTGATG
CTTCCACTTCCGTTGTGAAAGAATTATTTGGGGCTGACATAGTAGACACC
TGCAAATCAGATCATAAGCTTTTGGAAttagaagaaattttattatttga
aaaattcaatgtCGTGTATGATGATGAATTGAACATTAAAACAATGTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_447:277102..277551

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065875 ID=TCONS_00065875|Name=TCONS_00065875|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_447:277102..277551 (Clytia hemisphaerica)
TGGACATTGTTTTAATGTTCAATTCATCATCATACACGacattgaatttt
tcaaataataaaatttcttctaaTTCCAAAAGCTTATGATCTGATTTGCA
GGTGTCTACTATGTCAGCCCCAAATAATTCTTTCACAACGGAAGTGGAAG
CATCAAGTTTGACATCACCTACTTGGAGTTCGGCGTGTAGCTGTGTTTTA
ATGTCCTCTAATTTTTGAGACTTTCCACAGACAATACACTTCACAACTCT
CTTACCAGGAATAATGGTGACTAAAATCTCACAATTTGAATCGTACTCGT
ACAGAGCTCATTTTTCCGACGTTTTTCGGTGCCGACCGCACAATTTTAAT
CGTACTGGGGATTGTGCACTCAATGATTCTTGTCGTCTGGAGAAGCCCAT
GTTCAGAGCAAATTTGTTTGATGTTTTTCAGTGCCGACTGGCCGACCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041273XLOC_041273Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065875-exon-scaffold_447-1491911889:277102..277551TCONS_00065875-exon-scaffold_447-1491911889:277102..277551Clytia hemisphaericaexon
TCONS_00065875-exon-scaffold_447-1510915933:277102..277551TCONS_00065875-exon-scaffold_447-1510915933:277102..277551Clytia hemisphaericaexon
TCONS_00065875-exon-scaffold_447-1575043694:277102..277551TCONS_00065875-exon-scaffold_447-1575043694:277102..277551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:277102..277551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.143553	0.166679	0	0.397043	0.470623	0.378525	0	0.372155	0	0	0.196083	0.685336	0.101675	2.17337	1.4353	1.87868	0.792887	2.97327	0.982521	0.569326	2.08273	0.337577	0.613814	0	0	1.61484	0.43085	0.326784	0.499412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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