TCONS_00065868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065868
Unique NameTCONS_00065868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065868 ID=TCONS_00065868|Name=TCONS_00065868|organism=Clytia hemisphaerica|type=transcript|length=337bp
GTGTAATGTGACTGCATCATCAATAATTGTGTGGAAACAACCGGACCATG
ATTTCCGCGACTTTCATGTGTTGGGAGAATACGAAGCTAGAAGATCTGGT
GACTACTTTCTAGTTCCCGCACTCAATATTGGAGGAGCAATCCAACAAGA
AATTGGAGATGATTGGTACCAACTGGACAACGGATTGATCATCGAAATAG
GTGAAAACAAAACAGACATCGTCGAACATCTATCAGACATAATCAAGGAA
TACAGCGCAAAATCAAGAGATGAAATAACAGCACCTATCCTTCAAGCGCA
TATTATCCAAACACTGCTTGAACAACGAAGACGATTG
Run BLAST on NCBI

protein sequence of TCONS_00065868-protein

>TCONS_00065868-protein ID=TCONS_00065868-protein|Name=TCONS_00065868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
CNVTASSIIVWKQPDHDFRDFHVLGEYEARRSGDYFLVPALNIGGAIQQE
IGDDWYQLDNGLIIEIGENKTDIVEHLSDIIKEYSAKSRDEITAPILQAH
IIQTLLEQRRRL
Run BLAST on NCBI

transcript from alignment at scaffold_447:193365..193701

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065868 ID=TCONS_00065868|Name=TCONS_00065868|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at scaffold_447:193365..193701 (Clytia hemisphaerica)
CAATCGTCTTCGTTGTTCAAGCAGTGTTTGGATAATATGCGCTTGAAGGA
TAGGTGCTGTTATTTCATCTCTTGATTTTGCGCTGTATTCCTTGATTATG
TCTGATAGATGTTCGACGATGTCTGTTTTGTTTTCACCTATTTCGATGAT
CAATCCGTTGTCCAGTTGGTACCAATCATCTCCAATTTCTTGTTGGATTG
CTCCTCCAATATTGAGTGCGGGAACTAGAAAGTAGTCACCAGATCTTCTA
GCTTCGTATTCTCCCAACACATGAAAGTCGCGGAAATCATGGTCCGGTTG
TTTCCACACAATTATTGATGATGCAGTCACATTACAC

Coding sequence (CDS) from alignment at scaffold_447:193365..193701

>TCONS_00065868 ID=TCONS_00065868|Name=TCONS_00065868|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_447:193365..193701 (Clytia hemisphaerica)
CAATCGTCTTCGTTGTTCAAGCAGTGTTTGGATAATATGCGCTTGAAGGA
TAGGTGCTGTTATTTCATCTCTTGATTTTGCGCTGTATTCCTTGATTATG
TCTGATAGATGTTCGACGATGTCTGTTTTGTTTTCACCTATTTCGATGAT
CAATCCGTTGTCCAGTTGGTACCAATCATCTCCAATTTCTTGTTGGATTG
CTCCTCCAATATTGAGTGCGGGAACTAGAAAGTAGTCACCAGATCTTCTA
GCTTCGTATTCTCCCAACACATGAAAGTCGCGGAAATCATGGTCCGGTTG
TTTCCACACAATTATTGATGATGCAGTCACATTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041266XLOC_041266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065868-exon-scaffold_447-1491911889:193365..193701TCONS_00065868-exon-scaffold_447-1491911889:193365..193701Clytia hemisphaericaexon
TCONS_00065868-exon-scaffold_447-1510915933:193365..193701TCONS_00065868-exon-scaffold_447-1510915933:193365..193701Clytia hemisphaericaexon
TCONS_00065868-exon-scaffold_447-1575043694:193365..193701TCONS_00065868-exon-scaffold_447-1575043694:193365..193701Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065868-proteinTCONS_00065868-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:193365..193701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.333603	0	0	0	0	0.184335	0	0	0	0	0	0	0.308314	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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