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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065867 ID=TCONS_00065867|Name=TCONS_00065867|organism=Clytia hemisphaerica|type=transcript|length=1888bp
CTTAAATTAATTTGCTAGGAAATGGATCGATGAGAAAATTCAAACATTTT
GCTCAAAAGTGTTAAAGATACCTAGATACAGCCAATGTACCAACGTGGAT
CTTATTCATTGCATCCGCGCTAATCATGCTGTAATCTTTGTTATATGTTG
CGGCATGCTCGAACCTCATTCCTACCCGCGAGTGTATGAAGtggttgttt
tcattttctgttCGGCCACTGTTGTCCTTCTTAGGTACTTTGCAGGGAAC
GATACCCAAATAGCGTTTCGATGATGATCTTGATTTGTGTACCGGCACAA
AAAGGTAACGAATTGTGTTGGGTGCGATGCCATGTTCAGCCAAACCAGGC
ACCACTTTCAACAAGTGATCCCTAATATCATTTAGTGAAACTCCACACGA
ACGGAAGTCATCGTCTCGTCTCTTTTCTTGGGCTTTGAAAccatttgttt
ttataaacttGGTTATCTCGTCTGGTATGGTCGGAAATTTGGACACGATC
GATGGTTGACCTTTCTTTTTGTGGACGGTTGCTTTTTCCAGAGGCTTTGG
TACGTCTCCAGAGTTTTCCTCTTGAGTGGTATCTTTCTGCTGTGCGCTTA
TAATTTTATCAATCACCTCACCACAGTTTGTTTGACAAAAGTTTATTAGA
TACTCTTTTGTCTTTAAGATCAACACATAAAGAGGGAGTGATCGTAAGAA
ACAgtttaaaatgttttgttttttaaatctagaGTCCATGCTTGGAAACA
TATCAAATACCATTTTCGTTGGAACTACCGCAGACGATTGCAAGAGAAAC
GCAAGATGCAAAAGCTCTGTTTGAGTCAAGCCCAAATCTGGTCTTTTGTC
AATTAATTCGTTGCATAAATCATTCAATCCTTCACCCCAAGTTCTTTCTA
TCCCGGCTTTAGCGAAAATCTTCAGATCGATTGTGTCATCAGCAAGTAAC
TTCGCTTCTCGGTCTTGAATCTGTTTTACTCTCCTGTTCAGTGAGTATTT
CAAGCACTTTTCGCTTATCAAATTCTCAATTTTTAGTGCACCTTGTAAAC
AGATGTTCATAAGTTCTCGATGTTGCATAAGTTTCTGTTCTAAAAGTCCA
AATCCTAATGATGGTTCGATTACTATCAAGGATAAGCGTGTCAAATTTGC
TCCAAAGTCACATAAGGACTGCTGCAGATCTTGTATGTCGAGTTGAAGTT
ggctaattttatttttaggttGTCGGATTGTTGACGTTTTTACCGTGTCT
AATTGTTTTGAAATACCATTGTATGATTTGGCAGTCTCGTGAATGGCTCT
GATCAAAAGTTCGATATCGTTAAATGAAGAAATAGCTTTTGATAAACCAG
GTGTGATATGATCAAGAAATTCGCTGATAATGCTATATCTGGGAGAGTCT
GGTGCAAGATGGACTTTACGATTTGGATCAGTAGATGGTAGTTGGTTTCG
ATCGTTACAAAATGACTGAGAAGACTTTGGCGTTCGTGAAGTGTCTGAAG
AAACAGTGGTTTTGTGGATTTGCCTTTTACTTGACTTTGCTGGGATGGCG
TTTCCTGATTGTCCCGAGAGTTTATTTTTGCGTTTTTGGATTATGTCATT
AACATATTGCATATTATCTTTGTTCTCGTTCCATAGTTTGTTCGCTTCTT
TAATAAACTCTTCCTTAGTCAATTTACTGCTCTTGAAAAAGTAACACGCC
TCAACAAATTGCTCATAAAGTGTTTTGGGTGGATGCTTATAATACGTAGT
GGGCGGCGCCAACTTTCCGAAAATGGTTCGTTGACGACTCATTCTATCAA
TCTTATATCATTATCAGATCTATAAAATTTCATGAAACAAAacagttttc
aaaaacaataggcCATATAATTtcctcttgatttaccc Run BLAST on NCBI protein sequence of TCONS_00065867-protein >TCONS_00065867-protein ID=TCONS_00065867-protein|Name=TCONS_00065867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp
MSRQRTIFGKLAPPTTYYKHPPKTLYEQFVEACYFFKSSKLTKEEFIKEA
NKLWNENKDNMQYVNDIIQKRKNKLSGQSGNAIPAKSSKRQIHKTTVSSD
TSRTPKSSQSFCNDRNQLPSTDPNRKVHLAPDSPRYSIISEFLDHITPGL
SKAISSFNDIELLIRAIHETAKSYNGISKQLDTVKTSTIRQPKNKISQLQ
LDIQDLQQSLCDFGANLTRLSLIVIEPSLGFGLLEQKLMQHRELMNICLQ
GALKIENLISEKCLKYSLNRRVKQIQDREAKLLADDTIDLKIFAKAGIER
TWGEGLNDLCNELIDKRPDLGLTQTELLHLAFLLQSSAVVPTKMVFDMFP
SMDSRFKKQNILNCFLRSLPLYVLILKTKEYLINFCQTNCGEVIDKIISA
QQKDTTQEENSGDVPKPLEKATVHKKKGQPSIVSKFPTIPDEITKFIKTN
GFKAQEKRRDDDFRSCGVSLNDIRDHLLKVVPGLAEHGIAPNTIRYLFVP
VHKSRSSSKRYLGIVPCKVPKKDNSGRTENENNHFIHSRVGMRFEHAATY
NKDYSMISADAMNKIHVGTLAVSRYL Run BLAST on NCBI transcript from alignment at scaffold_447:173001..174888 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065867 ID=TCONS_00065867|Name=TCONS_00065867|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at scaffold_447:173001..174888 (Clytia hemisphaerica)
gggtaaatcaagaggaAATTATATGgcctattgtttttgaaaactgtTTT
GTTTCATGAAATTTTATAGATCTGATAATGATATAAGATTGATAGAATGA
GTCGTCAACGAACCATTTTCGGAAAGTTGGCGCCGCCCACTACGTATTAT
AAGCATCCACCCAAAACACTTTATGAGCAATTTGTTGAGGCGTGTTACTT
TTTCAAGAGCAGTAAATTGACTAAGGAAGAGTTTATTAAAGAAGCGAACA
AACTATGGAACGAGAACAAAGATAATATGCAATATGTTAATGACATAATC
CAAAAACGCAAAAATAAACTCTCGGGACAATCAGGAAACGCCATCCCAGC
AAAGTCAAGTAAAAGGCAAATCCACAAAACCACTGTTTCTTCAGACACTT
CACGAACGCCAAAGTCTTCTCAGTCATTTTGTAACGATCGAAACCAACTA
CCATCTACTGATCCAAATCGTAAAGTCCATCTTGCACCAGACTCTCCCAG
ATATAGCATTATCAGCGAATTTCTTGATCATATCACACCTGGTTTATCAA
AAGCTATTTCTTCATTTAACGATATCGAACTTTTGATCAGAGCCATTCAC
GAGACTGCCAAATCATACAATGGTATTTCAAAACAATTAGACACGGTAAA
AACGTCAACAATCCGACaacctaaaaataaaattagccAACTTCAACTCG
ACATACAAGATCTGCAGCAGTCCTTATGTGACTTTGGAGCAAATTTGACA
CGCTTATCCTTGATAGTAATCGAACCATCATTAGGATTTGGACTTTTAGA
ACAGAAACTTATGCAACATCGAGAACTTATGAACATCTGTTTACAAGGTG
CACTAAAAATTGAGAATTTGATAAGCGAAAAGTGCTTGAAATACTCACTG
AACAGGAGAGTAAAACAGATTCAAGACCGAGAAGCGAAGTTACTTGCTGA
TGACACAATCGATCTGAAGATTTTCGCTAAAGCCGGGATAGAAAGAACTT
GGGGTGAAGGATTGAATGATTTATGCAACGAATTAATTGACAAAAGACCA
GATTTGGGCTTGACTCAAACAGAGCTTTTGCATCTTGCGTTTCTCTTGCA
ATCGTCTGCGGTAGTTCCAACGAAAATGGTATTTGATATGTTTCCAAGCA
TGGACtctagatttaaaaaacaaaacattttaaacTGTTTCTTACGATCA
CTCCCTCTTTATGTGTTGATCTTAAAGACAAAAGAGTATCTAATAAACTT
TTGTCAAACAAACTGTGGTGAGGTGATTGATAAAATTATAAGCGCACAGC
AGAAAGATACCACTCAAGAGGAAAACTCTGGAGACGTACCAAAGCCTCTG
GAAAAAGCAACCGTCCACAAAAAGAAAGGTCAACCATCGATCGTGTCCAA
ATTTCCGACCATACCAGACGAGATAACCaagtttataaaaacaaatggTT
TCAAAGCCCAAGAAAAGAGACGAGACGATGACTTCCGTTCGTGTGGAGTT
TCACTAAATGATATTAGGGATCACTTGTTGAAAGTGGTGCCTGGTTTGGC
TGAACATGGCATCGCACCCAACACAATTCGTTACCTTTTTGTGCCGGTAC
ACAAATCAAGATCATCATCGAAACGCTATTTGGGTATCGTTCCCTGCAAA
GTACCTAAGAAGGACAACAGTGGCCGaacagaaaatgaaaacaaccaCTT
CATACACTCGCGGGTAGGAATGAGGTTCGAGCATGCCGCAACATATAACA
AAGATTACAGCATGATTAGCGCGGATGCAATGAATAAGATCCACGTTGGT
ACATTGGCTGTATCTAGGTATCTTTAACACTTTTGAGCAAAATGTTTGAA
TTTTCTCATCGATCCATTTCCTAGCAAATTAATTTAAG Coding sequence (CDS) from alignment at scaffold_447:173001..174888 >TCONS_00065867 ID=TCONS_00065867|Name=TCONS_00065867|organism=Clytia hemisphaerica|type=CDS|length=1731bp|location=Sequence derived from alignment at scaffold_447:173001..174888 (Clytia hemisphaerica)
ATGAGTCGTCAACGAACCATTTTCGGAAAGTTGGCGCCGCCCACTACGTA
TTATAAGCATCCACCCAAAACACTTTATGAGCAATTTGTTGAGGCGTGTT
ACTTTTTCAAGAGCAGTAAATTGACTAAGGAAGAGTTTATTAAAGAAGCG
AACAAACTATGGAACGAGAACAAAGATAATATGCAATATGTTAATGACAT
AATCCAAAAACGCAAAAATAAACTCTCGGGACAATCAGGAAACGCCATCC
CAGCAAAGTCAAGTAAAAGGCAAATCCACAAAACCACTGTTTCTTCAGAC
ACTTCACGAACGCCAAAGTCTTCTCAGTCATTTTGTAACGATCGAAACCA
ACTACCATCTACTGATCCAAATCGTAAAGTCCATCTTGCACCAGACTCTC
CCAGATATAGCATTATCAGCGAATTTCTTGATCATATCACACCTGGTTTA
TCAAAAGCTATTTCTTCATTTAACGATATCGAACTTTTGATCAGAGCCAT
TCACGAGACTGCCAAATCATACAATGGTATTTCAAAACAATTAGACACGG
TAAAAACGTCAACAATCCGACaacctaaaaataaaattagccAACTTCAA
CTCGACATACAAGATCTGCAGCAGTCCTTATGTGACTTTGGAGCAAATTT
GACACGCTTATCCTTGATAGTAATCGAACCATCATTAGGATTTGGACTTT
TAGAACAGAAACTTATGCAACATCGAGAACTTATGAACATCTGTTTACAA
GGTGCACTAAAAATTGAGAATTTGATAAGCGAAAAGTGCTTGAAATACTC
ACTGAACAGGAGAGTAAAACAGATTCAAGACCGAGAAGCGAAGTTACTTG
CTGATGACACAATCGATCTGAAGATTTTCGCTAAAGCCGGGATAGAAAGA
ACTTGGGGTGAAGGATTGAATGATTTATGCAACGAATTAATTGACAAAAG
ACCAGATTTGGGCTTGACTCAAACAGAGCTTTTGCATCTTGCGTTTCTCT
TGCAATCGTCTGCGGTAGTTCCAACGAAAATGGTATTTGATATGTTTCCA
AGCATGGACtctagatttaaaaaacaaaacattttaaacTGTTTCTTACG
ATCACTCCCTCTTTATGTGTTGATCTTAAAGACAAAAGAGTATCTAATAA
ACTTTTGTCAAACAAACTGTGGTGAGGTGATTGATAAAATTATAAGCGCA
CAGCAGAAAGATACCACTCAAGAGGAAAACTCTGGAGACGTACCAAAGCC
TCTGGAAAAAGCAACCGTCCACAAAAAGAAAGGTCAACCATCGATCGTGT
CCAAATTTCCGACCATACCAGACGAGATAACCaagtttataaaaacaaat
ggTTTCAAAGCCCAAGAAAAGAGACGAGACGATGACTTCCGTTCGTGTGG
AGTTTCACTAAATGATATTAGGGATCACTTGTTGAAAGTGGTGCCTGGTT
TGGCTGAACATGGCATCGCACCCAACACAATTCGTTACCTTTTTGTGCCG
GTACACAAATCAAGATCATCATCGAAACGCTATTTGGGTATCGTTCCCTG
CAAAGTACCTAAGAAGGACAACAGTGGCCGaacagaaaatgaaaacaacc
aCTTCATACACTCGCGGGTAGGAATGAGGTTCGAGCATGCCGCAACATAT
AACAAAGATTACAGCATGATTAGCGCGGATGCAATGAATAAGATCCACGT
TGGTACATTGGCTGTATCTAGGTATCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065867-exon-scaffold_447-1491911889:173001..174888 | TCONS_00065867-exon-scaffold_447-1491911889:173001..174888 | Clytia hemisphaerica | exon |
| TCONS_00065867-exon-scaffold_447-1510915933:173001..174888 | TCONS_00065867-exon-scaffold_447-1510915933:173001..174888 | Clytia hemisphaerica | exon |
| TCONS_00065867-exon-scaffold_447-1575043694:173001..174888 | TCONS_00065867-exon-scaffold_447-1575043694:173001..174888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:173001..174888 . |
Blast
The following BLAST results are available for this feature:
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