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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065864 ID=TCONS_00065864|Name=TCONS_00065864|organism=Clytia hemisphaerica|type=transcript|length=1414bp
GCTGATGCAACTGTTAGATTTGATTCTGATATGGGCCCCATGACAACTTC
AACTGATTTCTTCATTAGGAAACGacatttttgacagtttttacGAATGA
GCTTGATCATGGACCGATATTCGATAATGTAGGCTTTCTTTAGAAGATAT
CGAATTGTTTTTTCAACTCCAGTGTGTTGGCAAATGGGATGGTTCCAGTG
AATGTCGAGAGCGATACTGAAAGCAATAGGTGAGTGATTGCTGAGTACAG
GTACGCAGAAGGTATCGTTTGAGAGGTCTTTCATTGTTGAGGTGAATTTT
CCAATGATTGATACTTCATCTGATGGAAGAATTCTACCAGTATAATGTAG
AATACCATTCTTTTCTTGAGTGATCTTGTCGAATTTCTTTGGCTGAATGA
ATTGAAGTACTTCTCTTGTCCCAATTCTGAAGAAATATTGCTCTGAATCC
TTAATTTCCTCATCTGACAAGTTTGCTTGATAAAcgcaattttgattttt
actttaaTTCTCTTCTGGATGTTCCGACAAAAACGAATGACGTATGCAAT
GATTCTGACAACTTTTGTGAATGAGTGACGATTGGGATCAATTAGATAGT
TCAAGAAAGCATAGTAATCTTTGACGACATCATTGACTTTTGAGACGTGT
GAATCGACTTCACCTGGGTTGAATTTGAGCTTGACTTCGTCTGGTTTGAA
GATGGGAATTTCGATATGCTCGAGTTGCAACCAAGGATGACCATTGATCC
ATGCTGAACCAGCATCAACGTCCTTGATGGATGCGCCTCTTCGAGTTCCA
ATATCACCAAGATTATTATCAGATTGGATGTAATACTATTGATTAGCAGT
CGTAAAGCGAAGGATTTCTATTACTCAATTCCTGACCCATTGATCCCAAG
GTTTTTCGTCGTTGGTGATCCAGAATAGACTTGCTTGATTATCGGTGAGT
TTGATTGCATTCTTGTGATACTTGATGAATGATCTACGAACAACTTCTCC
TGTGTAGGCGTTAATCAAAGCTGCGTAGAGCTCGGCTCTCGGTAGTGACA
TTCCTTTAGGTACAACACGTGTTCTGGATAGGACAAGTTGACATGACGAG
CCTCCTTATTTCTTCTTGAAACGAACATAGATACAGGAGCATACTGTTGA
CTTGCTAGCGTCGCCAAAATCGATGGTTTCCAGGTCGAGAGAAATTGCAT
CTTCAGGAATGATAGCACGTTGATATTTGAGGTTGTTGATTTCCTTCATC
AGGTCGAAGTGTGATTCCCACAATGGTCTTAGTTCATCTGGGATCTTGTC
ATCCCAGTCGAGTTTTCGGTGAACCAGTTCTTGTAGATCCAACTTCATAG
CAGCAACGATTGGGGTGACTTTTCCTGTAAGATCAAAAATTTCTGCTACT
TTCGATGCGCAGTG Run BLAST on NCBI protein sequence of TCONS_00065864-protein >TCONS_00065864-protein ID=TCONS_00065864-protein|Name=TCONS_00065864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
HCASKVAEIFDLTGKVTPIVAAMKLDLQELVHRKLDWDDKIPDELRPLWE
SHFDLMKEINNLKYQRAIIPEDAISLDLETIDFGDASKSTVCSCIYVRFK
KK Run BLAST on NCBI transcript from alignment at scaffold_447:984..2397 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065864 ID=TCONS_00065864|Name=TCONS_00065864|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_447:984..2397 (Clytia hemisphaerica)
CACTGCGCATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCAC
CCCAATCGTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGAA
AACTCGACTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGAA
TCACACTTCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTGC
TATCATTCCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTTG
GCGACGCTAGCAAGTCAACAGTATGCTCCTGTATCTATGTTCGTTTCAAG
AAGAAATAAGGAGGCTCGTCATGTCAACTTGTCCTATCCAGAACACGTGT
TGTACCTAAAGGAATGTCACTACCGAGAGCCGAGCTCTACGCAGCTTTGA
TTAACGCCTACACAGGAGAAGTTGTTCGTAGATCATTCATCAAGTATCAC
AAGAATGCAATCAAACTCACCGATAATCAAGCAAGTCTATTCTGGATCAC
CAACGACGAAAAACCTTGGGATCAATGGGTCAGGAATTGAGTAATAGAAA
TCCTTCGCTTTACGACTGCTAATCAATAGTATTACATCCAATCTGATAAT
AATCTTGGTGATATTGGAACTCGAAGAGGCGCATCCATCAAGGACGTTGA
TGCTGGTTCAGCATGGATCAATGGTCATCCTTGGTTGCAACTCGAGCATA
TCGAAATTCCCATCTTCAAACCAGACGAAGTCAAGCTCAAATTCAACCCA
GGTGAAGTCGATTCACACGTCTCAAAAGTCAATGATGTCGTCAAAGATTA
CTATGCTTTCTTGAACTATCTAATTGATCCCAATCGTCACTCATTCACAA
AAGTTGTCAGAATCATTGCATACGTCATTCGTTTTTGTCGGAACATCCAG
AAGAGAAttaaagtaaaaatcaaaattgcgTTTATCAAGCAAACTTGTCA
GATGAGGAAATTAAGGATTCAGAGCAATATTTCTTCAGAATTGGGACAAG
AGAAGTACTTCAATTCATTCAGCCAAAGAAATTCGACAAGATCACTCAAG
AAAAGAATGGTATTCTACATTATACTGGTAGAATTCTTCCATCAGATGAA
GTATCAATCATTGGAAAATTCACCTCAACAATGAAAGACCTCTCAAACGA
TACCTTCTGCGTACCTGTACTCAGCAATCACTCACCTATTGCTTTCAGTA
TCGCTCTCGACATTCACTGGAACCATCCCATTTGCCAACACACTGGAGTT
GAAAAAACAATTCGATATCTTCTAAAGAAAGCCTACATTATCGAATATCG
GTCCATGATCAAGCTCATTCgtaaaaactgtcaaaaatgtCGTTTCCTAA
TGAAGAAATCAGTTGAAGTTGTCATGGGGCCCATATCAGAATCAAATCTA
ACAGTTGCATCAGC Coding sequence (CDS) from alignment at scaffold_447:984..2397 >TCONS_00065864 ID=TCONS_00065864|Name=TCONS_00065864|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_447:984..2397 (Clytia hemisphaerica)
CACTGCGCATCGAAAGTAGCAGAAATTTTTGATCTTACAGGAAAAGTCAC
CCCAATCGTTGCTGCTATGAAGTTGGATCTACAAGAACTGGTTCACCGAA
AACTCGACTGGGATGACAAGATCCCAGATGAACTAAGACCATTGTGGGAA
TCACACTTCGACCTGATGAAGGAAATCAACAACCTCAAATATCAACGTGC
TATCATTCCTGAAGATGCAATTTCTCTCGACCTGGAAACCATCGATTTTG
GCGACGCTAGCAAGTCAACAGTATGCTCCTGTATCTATGTTCGTTTCAAG
AAGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065864-exon-scaffold_447-1491911889:984..2397 | TCONS_00065864-exon-scaffold_447-1491911889:984..2397 | Clytia hemisphaerica | exon |
| TCONS_00065864-exon-scaffold_447-1510915933:984..2397 | TCONS_00065864-exon-scaffold_447-1510915933:984..2397 | Clytia hemisphaerica | exon |
| TCONS_00065864-exon-scaffold_447-1575043694:984..2397 | TCONS_00065864-exon-scaffold_447-1575043694:984..2397 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:984..2397 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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