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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065860 ID=TCONS_00065860|Name=TCONS_00065860|organism=Clytia hemisphaerica|type=transcript|length=732bp
TAGAGAATGAATTGACAATCAATGCCAGTTGTGGTCCTTGCTACAGAAAA
CTTGACGAGGTTCTACAATCGGTCGGTGTTCAAAGACAGGCATATCACGG
AAGATCATTTATAGGAAACGATGTTCATAAAATGTTGCACgaaaaaaaca
ttcgCAAGCTATGTCACAGCATTCCTAAACTAGTTTACGATGAATTTGGT
TTGATCGACACCCCTGCCCACATACGTGCATGTGATATCAGCAAGAGATT
TAAAGAATTGATGGATAATTATGGTGTTTGTCATCGACTCATGAACTCAT
CTGATTATTTCAATGATGAAAAAATTCAGCAGCTagATACAGCAATCAAA
AAGTTCTTTGTGCACTACCGTGATAACTTTAAACAATCAATCACAATCAA
ACTTCATATGCtcgagtgtcacattctaaagTTCATCAAAAAGTGGCGTA
TTGGTCTTGGTATGTATGGCGAACAAGGTGCGGAGAGTATTCATCCAGAG
TTCAATAGTCTTCGAAAAACATATGCATCTCACAAACCTGCTGAAAAACG
ATTACAGACCATGGTCGAGCAGCATCTCCTCCGAGTTGCACCAGAAGTTC
GGGTAACTGTTCCAAAACCTCCAACACGCAAGCGAAAACATAAACCTGAA
GagtaatatatatatattattgATTTTAAAGCATTATAACAACACAACTA
ATTTTTACATTGAATATCCTTCACAGTTCCTA Run BLAST on NCBI protein sequence of TCONS_00065860-protein >TCONS_00065860-protein ID=TCONS_00065860-protein|Name=TCONS_00065860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
ENELTINASCGPCYRKLDEVLQSVGVQRQAYHGRSFIGNDVHKMLHEKNI
RKLCHSIPKLVYDEFGLIDTPAHIRACDISKRFKELMDNYGVCHRLMNSS
DYFNDEKIQQLDTAIKKFFVHYRDNFKQSITIKLHMLECHILKFIKKWRI
GLGMYGEQGAESIHPEFNSLRKTYASHKPAEKRLQTMVEQHLLRVAPEVR
VTVPKPPTRKRKHKPEE Run BLAST on NCBI transcript from alignment at scaffold_447:354352..355582- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065860 ID=TCONS_00065860|Name=TCONS_00065860|organism=Clytia hemisphaerica|type=transcript|length=1231bp|location=Sequence derived from alignment at scaffold_447:354352..355582- (Clytia hemisphaerica)
TAGAGAATGAATTGACAATCAATGCCAGTTGTGGTCCTTGCTACAGAAAA
CTTGACGAGGTTCTACAATCGGTCGGTGTTCAAAGACAGGCATATCACGG
AAGATCATTTATAGGAAACGATGTTCATAAAATGTTGCACGTACGTATCA
AAAGTCCAAGATACATTGATAAAAATCCTTTTGAAAATTTTATAAATGCA
AAAGACCGTAAAAATNAAAGTCCAAGATACATTGATAAAAATCCTTTTGA
AAATTTTAAAAATGCGAAAGACCGTAAAAATGCTCTTTTTTCATGAAATA
TACAATTTAGATATAATTACTGTGGAGCAATATCAAAAATTTTGCTTGGA
GCTAATTTCCATATCCTACCAAGTACCTAAAAAATTCATGATGTGAAGTA
AGACCAAATTTAATTTAATCCACTTACAATGTTTAAAACTTCTATCTTTC
AGGAAAAAAACATTCGCAAGCTATGTCACAGCATTCCTAAACTAGTTTAC
GATGAATTTGGTTTGATCGACACCCCTGCCCACATACGTGCATGTGATAT
CAGCAAGAGATTTAAAGAATTGATGGATAATTATGGTGTTTGTCATCGAC
TCATGAACTCATCTGATTATTTCAATGATGAAAAAATTCAGCAGCTAGGT
ATGTTTTTTTTGTGATATCCAGTATGATTGTCTATTTTTGAATACCCGCT
TTAAATTAAACATTCAAAATTCTGTCCGTACCAACCATAATGTCTCTTTG
GTTGGTGATTTTAAAAAGGGGAATTAATATTGGAAATTTGTATAGTATAA
GTTCCACTTACCAGGATCCTTGTCTTTTTCATCAGATACAGCAATCAAAA
AGTTCTTTGTGCACTACCGTGATAACTTTAAACAATCAATCACAATCAAA
CTTCATATGCTCGAGTGTCACATTCTAAAGTTCATCAAAAAGTGGCGTAT
TGGTCTTGGTATGTATGGCGAACAAGGTGCGGAGAGTATTCATCCAGAGT
TCAATAGTCTTCGAAAAACATATGCATCTCACAAACCTGCTGAAAAACGA
TTACAGACCATGGTCGAGCAGCATCTCCTCCGAGTTGCACCAGAAGTTCG
GGTAACTGTTCCAAAACCTCCAACACGCAAGCGAAAACATAAACCTGAAG
AGTAATATATATATATTATTGATTTTAAAGCATTATAACAACACAACTAA
TTTTTACATTGAATATCCTTCACAGTTCCTA Coding sequence (CDS) from alignment at scaffold_447:354352..355582- >TCONS_00065860 ID=TCONS_00065860|Name=TCONS_00065860|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at scaffold_447:354352..355582- (Clytia hemisphaerica)
ATACAGCAATCAAAAAGTTCTTTGTGCACTACCGTGATAACTTTAAACAA
TCAATCACAATCAAACTTCATATGCTCGAGTGTCACATTCTAAAGTTCAT
CAAAAAGTGGCGTATTGGTCTTGGTATGTATGGCGAACAAGGTGCGGAGA
GTATTCATCCAGAGTTCAATAGTCTTCGAAAAACATATGCATCTCACAAA
CCTGCTGAAAAACGATTACAGACCATGGTCGAGCAGCATCTCCTCCGAGT
TGCACCAGAAGTTCGGGTAACTGTTCCAAAACCTCCAACACGCAAGCGAA
AACATAAACCTGAAGAGTAAGAAAAAAACATTCGCAAGCTATGTCACAGC
ATTCCTAAACTAGTTTACGATGAATTTGGTTTGATCGACACCCCTGCCCA
CATACGTGCATGTGATATCAGCAAGAGATTTAAAGAATTGATGGATAATT
ATGGTGTTTGTCATCGACTCATGAACTCATCTGATTATTTCAATGATGAA
AAAATTCAGCAGCTAGGAGAATGAATTGACAATCAATGCCAGTTGTGGTC
CTTGCTACAGAAAACTTGACGAGGTTCTACAATCGGTCGGTGTTCAAAGA
CAGGCATATCACGGAAGATCATTTATAGGAAACGATGTTCATAAAATGTT
GCACATACAGCAATCAAAAAGTTCTTTGTGCACTACCGTGATAACTTTAA
ACAATCAATCACAATCAAACTTCATATGCTCGAGTGTCACATTCTAAAGT
TCATCAAAAAGTGGCGTATTGGTCTTGGTATGTATGGCGAACAAGGTGCG
GAGAGTATTCATCCAGAGTTCAATAGTCTTCGAAAAACATATGCATCTCA
CAAACCTGCTGAAAAACGATTACAGACCATGGTCGAGCAGCATCTCCTCC
GAGTTGCACCAGAAGTTCGGGTAACTGTTCCAAAACCTCCAACACGCAAG
CGAAAACATAAACCTGAAGAGTAAGAAAAAAACATTCGCAAGCTATGTCA
CAGCATTCCTAAACTAGTTTACGATGAATTTGGTTTGATCGACACCCCTG
CCCACATACGTGCATGTGATATCAGCAAGAGATTTAAAGAATTGATGGAT
AATTATGGTGTTTGTCATCGACTCATGAACTCATCTGATTATTTCAATGA
TGAAAAAATTCAGCAGCTAGGAGAATGAATTGACAATCAATGCCAGTTGT
GGTCCTTGCTACAGAAAACTTGACGAGGTTCTACAATCGGTCGGTGTTCA
AAGACAGGCATATCACGGAAGATCATTTATAGGAAACGATGTTCATAAAA
TGTTGCACATACAGCAATCAAAAAGTTCTTTGTGCACTACCGTGATAACT
TTAAACAATCAATCACAATCAAACTTCATATGCTCGAGTGTCACATTCTA
AAGTTCATCAAAAAGTGGCGTATTGGTCTTGGTATGTATGGCGAACAAGG
TGCGGAGAGTATTCATCCAGAGTTCAATAGTCTTCGAAAAACATATGCAT
CTCACAAACCTGCTGAAAAACGATTACAGACCATGGTCGAGCAGCATCTC
CTCCGAGTTGCACCAGAAGTTCGGGTAACTGTTCCAAAACCTCCAACACG
CAAGCGAAAACATAAACCTGAAGAGTAAGAAAAAAACATTCGCAAGCTAT
GTCACAGCATTCCTAAACTAGTTTACGATGAATTTGGTTTGATCGACACC
CCTGCCCACATACGTGCATGTGATATCAGCAAGAGATTTAAAGAATTGAT
GGATAATTATGGTGTTTGTCATCGACTCATGAACTCATCTGATTATTTCA
ATGATGAAAAAATTCAGCAGCTAGGAGAATGAATTGACAATCAATGCCAG
TTGTGGTCCTTGCTACAGAAAACTTGACGAGGTTCTACAATCGGTCGGTG
TTCAAAGACAGGCATATCACGGAAGATCATTTATAGGAAACGATGTTCAT
AAAATGTTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065860-exon-scaffold_447-1575043694:355443..355582 | TCONS_00065860-exon-scaffold_447-1575043694:355443..355582 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1575043694:354935..355130 | TCONS_00065860-exon-scaffold_447-1575043694:354935..355130 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1575043694:354352..354747 | TCONS_00065860-exon-scaffold_447-1575043694:354352..354747 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1510915933:355443..355582 | TCONS_00065860-exon-scaffold_447-1510915933:355443..355582 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1510915933:354935..355130 | TCONS_00065860-exon-scaffold_447-1510915933:354935..355130 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1510915933:354352..354747 | TCONS_00065860-exon-scaffold_447-1510915933:354352..354747 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1491911889:355443..355582 | TCONS_00065860-exon-scaffold_447-1491911889:355443..355582 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1491911889:354935..355130 | TCONS_00065860-exon-scaffold_447-1491911889:354935..355130 | Clytia hemisphaerica | exon |
| TCONS_00065860-exon-scaffold_447-1491911889:354352..354747 | TCONS_00065860-exon-scaffold_447-1491911889:354352..354747 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:354352..355582 - |
Blast
The following BLAST results are available for this feature:
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