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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065858 ID=TCONS_00065858|Name=TCONS_00065858|organism=Clytia hemisphaerica|type=transcript|length=1265bp ttttagatcaGAGTTCAACACGTGGACTCACACTATTGCTCTGCAAGCTG GAAATACATGCGTGAATTCGCAATTAAACACAACAATCTGGTTTCCCTAG TTAGCCTTGACGATAAGCACAAAATTAAGTGCGGAGAGCCTTCTTATCCA GATGCCGCAGCTGAACGTGGAAAGAAGGTTATTGTTGGAGAAAACCAAGT GATGGCTGCAGCCCTGCAATGGACCACGACTTTACAAAATTCTCTTTGAT TCCATCTGTTCACTTGATTATCGACATACCTGAAGATGTCAGCCAGTCAT TTTATCGTGGTGATGTCCACGTTGGGTTTAAAGATTCGGCATTCGAACCG TCATCTGCATTACGTCATTCAAGCGAGCTGAAAGAAATTCTTCAACGTAG AGGTCCGATATCTCCAGTCCTATTGATGTATACAGATGGTGGACCCGATC ATCGAGTGAACTAGTGAACTGCTCTCATTGCACTTTTTCGTGATCTGAAT TTGGATATGCTCATTGCTCTACGAACTGCACCGAGCAATTCTTCGGCCAA TCCAGTAGAGCGCATAATGAGCATTGTAAACATTGGTTTGCAGGGAATCG GTGTGATGAGACAAAAGATGTCTGACGAGTTTGAGAAAGCAGTCTCTAAA GCAAGTAGCGTCAAGGAAGTTCGGGAGACATTGAAGTCAGATGAATTACG CGATGAAATGAAACAGTCACTTGCATTTCCAAAGGAGCTGCTCAACAACC AGATGAAACGATTGTCTTTAAAGGACAAGGATTTTCAAGTGTTCAATCCT GTCAATGAGGCGTCAATCGATCAATTGTGGGAGAAGTGCCAGGAAATAGA CCCTGACCTACAGAGAAACAAGACTACAAAGAAAGACCTCAAGAATTTGG ATTCTCTCAAAGATTTCTTGAAGACACACTGCAAGGAGACTCACTATGCT TTCCAGATCAAGAAATGCTCAAGTGGTGATTGTACACATTGTGGCCCCTA TCTAAATGAAGAATGCAAGCCACTTCCTTTCTTGCCGGACCCTCAGCTTG GAGCGAATGGACATTACAAACCTTTTAAGGACATGTATGGCAAGGTCACT AAAGATagtCGTCCAAGCCTAAATGCGAGACCAAAAAACACacgaaaaaa gttgaacttctcTCCATCAAAACAGCACGCCAAAAATACCGACACCATGC TTCAATGCGAAGAATGTGACAAATGGCGTCtcgtattttcaaaaaagaag atcACTAAAGCCCAA Run BLAST on NCBI protein sequence of TCONS_00065858-protein >TCONS_00065858-protein ID=TCONS_00065858-protein|Name=TCONS_00065858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MLIALRTAPSNSSANPVERIMSIVNIGLQGIGVMRQKMSDEFEKAVSKAS SVKEVRETLKSDELRDEMKQSLAFPKELLNNQMKRLSLKDKDFQVFNPVN EASIDQLWEKCQEIDPDLQRNKTTKKDLKNLDSLKDFLKTHCKETHYAFQ IKKCSSGDCTHCGPYLNEECKPLPFLPDPQLGANGHYKPFKDMYGKVTKD SRPSLNARPKNTRKKLNFSPSKQHAKNTDTMLQCEECDKWRLVFSKKKIT KAQ Run BLAST on NCBI transcript from alignment at scaffold_447:259604..262920- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065858 ID=TCONS_00065858|Name=TCONS_00065858|organism=Clytia hemisphaerica|type=transcript|length=3317bp|location=Sequence derived from alignment at scaffold_447:259604..262920- (Clytia hemisphaerica) TTTTAGATCAGAGTTCAACACGTGGACTCACACTATTGCTCTGCAAGCTG
GAAATACATGCGTGAATTCGCAATTAAACACAACAATCTGGTTTCCCTAG
TTAGCCTTGACGATAAGCACAAAATTAAGTGCGGAGAGCCTTCTTATCCA
GATGCCGCAGCTGAACGTGGAAAGAAGGTTATTGTTGGAGAAAACCAAGT
GATGGCTGCAGCCCTGCAATGGACCACGACTTTACAAAATTCTCTTTGAT
TCCATCTGTTCACTTGATTGTAAGAGTAAAATTTAATCGTTTGTGTTTAA
TTCTTTTAAACGGCGATACTTCATGATTGTTATCGGACTCATATAAAAAC
TGTTCTTTGTTATAGGGAATTATTTTAGCTCATTTGGAAAATATCTTCTT
TCAACATTCTTATACATTATAATACATCATCCAGAATCTTTCTTGAACTG
TCTTCTTTCTACAAAAATTCAGATCGACATACCTGAAGATGTCAGCCAGT
CATTTTATCGTGGTGATGTCCACGTTGGGTTTAAAGATTCGGCATTCGAA
CCGTCATCTGCATTACGTCATTCAAGCGAGCTGAAAGAAATTCTTCAACG
TAGAGGTTAGTAAAATTTTTATTTCAAATTTTGTAAGTTTATAATGTTCA
TTTTAATTAATCATTACCAATGTTTCATGTATTCATGTGTTCATGTGTTT
ATTTCTTCGTCTCTCAAAGGTTTGACTTTCTAATAAATTTCAGGTCCGTT
ATCTCCAGTCCTATTGATGTATACAGATGGTGGACCCGATCATCGAGTGA
ACTATCTTTCAGTAAAAGTTGCTCTCGTTGCACTTTTTCGTGATCTGAAT
TTGGATATGCTCATTGCTCTACGAACTGCACCGAGCAATTCTTGNGACTC
GGTGAGAACTTTTTAGTCAGGTGGGGATAGAATGAAGGAGCCAAATGGGG
GTCCCACCGGGTCTGTGAGACAGGGGTGTTAATAAATGGAAAGCAAATGA
AGCTAGAATTATTTCTTATTTATTTTTTTTAGATCAGAGTTCAACACGTG
GACTCGCACTATTGCGCTGCAAGCTGGAAATACATGCGTGAATACGCAAT
TAAACACAACAATCTGGTTTCCCTAGTTAGCCTTGACGATAAGCACAAAA
TTAAGGGCGGAGAGCCTTCTTATCCAGTTGCCGCAGCTGAACGTGGAAAG
AAGGTTATTGTTGGAGAAAACCAAGTGATGTCTGCAATGGACCACGACGT
TACAAAATTGTCTTTGATTCCATCTGTTCACTTGATTGTAAGAGTAAAAT
TTAATCGTTTGTGTTTAATTCTTTTAAACGGCGATACTTCATGATTTTTA
TCGGACTCATATAAAAACTGTTCTTTGTTATAGGGAATTATGTTAGCTCA
TTTGGAAAATATCTTTTTTCAACATTCTTATACATTATAATACATCATCC
AGAATCTTTCTTGAACTGTCTTCTTTCTACAAAAATTCAGATCGACATAC
CTGAAGATGTCAGCCAGTCATTTTATCGTGGTGATGTCCACGTTGGGTTT
AAAGATTCGGCATTCGAACCGTCATCTGCATTACGTCATTCAAGCGAGCT
GAAAGAAATTCTTCAACGTAGAGGTTAGTAAAATTTTTGTTTCAAATTTT
GTAAGTTTATAATGTTCATTTTAATTAATCATTACCAATGTTTCATGTAT
TCATGTGTTCATGTGTTTATTTCTTCGTCTCTCAAAGGTTTGACTTTCTA
ATAAATTTCAGGTCCGATATCTCCAGTCCTATTGATGTATACAGATGGTG
GACCCGATCATCGAGTGAACTAGTGAACTGCTCTCATTGCACTTTTTCGT
GATCTGAATTTGGATATGCTCATTGCTCTACGAACTGCACCGAGCAATTC
TTCGGCCAATCCAGTAGAGCGCATAATGAGCATTGTAAACATTGGTTTGC
AGGGAATCGGTGTGATGAGACAAAAGATGTCTGACGAGTTTGAGAAAGCA
GTCTGTGAGTAACTATTGCATTCTTCTAAAATCTATCGGCGAAAAATCTA
ATAAATTACCTTTCTCTATTTTCGTATTAGTGCACTCTAGGAAATTACGG
CTTTTAAGGGATAAGTGTGATTCTGCTCCATTTTTAAAGGCTTGTTTGAA
TATCGAAAGTCATGACAATTGATTTAAAACTAAGTTACTCTGAATATTAT
TATTTCTTTTGAAGCTAAAGCAAGTAGCGTCAAGGAAGTTCGGGAGACAT
TGAAGTCAGATGAATTACGCGATGAAATGAAACAGTCACTTGCATTTCCA
AAGGAGCTGCTCAACAACCAGATGAAACGATTGTCTTTAAAGGACAAGGA
TTTTCAAGTGTTCAATCCTGTCAATGAGGCGTCAATCGATCAATTGTGGG
AGAAGTGCCAGGAAATAGACCCTGACCTACAGGTGTGTATTATTCTTATT
GGACAATGTTTACCACCCCCTTCCAAAATGAAATATAACTGTTATAAAAT
GATGTAGTGGCGCAAAGTGAAACTTTAGCTTCGTTTCGTTTCGGACTGCA
ATGCAACCAGAATTGGTGAGAGCAATCTTAAACCACAAAACTATTCAATT
TTATTCAGAGAAACAAGACTACAAAGAAAGACCTCAAGAATTTGGATTCT
CTCAAAGATTTCTTGAAGACACACTGCAAGGAGACTCACTATGCTTTCCA
GATCAAGAAATGCTCAAGTGGTGATTGTACACATTGTGGGTAGGAATTGT
TTTTTTCAGGCGTCAGTTGCGTCAATTGATTTAATTTTTGAAGAAATCTT
TATCCGAGATTTGCCTTCTTACGGCTCCCCATCAATGAAAGTTCTGAGAA
TCTTAAACCATTAACTTTTAGTAAAATTTTCTCTTCATTCTCATTTATTT
AGCCCCTATCTAAATGAAGAATGCAAGCCACTTCCTTTCTTGCCGGACCC
TCAGCTTGGAGCGAATGGACATTACAAACCTTTTAAGGACATGTATGGCA
AGGTCACTAAAGATGTAAGTAAATGTTCTAGCAATCATCTCCCTATTTCT
CTGTAAGTGAGTAATTATTTGGTTGTCAGTGTGACTATGAAATTAATTGA
TAAATGCCCCTGAATTGTTACATTTTTGAAATGAAATCGTTTATTTTTTT
TTCTTTAGAGTCGTCCAAGCCTAAATGCGAGACCAAAAAACACACGAAAA
AAGTTGAACTTCTCTCCATCAAAACAGCACGCCAAAAATACCGACACCAT
GCTTCAATGCGAAGAATGTGACAAATGGCGTCTCGTATTTTCAAAAAAGA
AGATCACTAAAGCCCAA Coding sequence (CDS) from alignment at scaffold_447:259604..262920- >TCONS_00065858 ID=TCONS_00065858|Name=TCONS_00065858|organism=Clytia hemisphaerica|type=CDS|length=3795bp|location=Sequence derived from alignment at scaffold_447:259604..262920- (Clytia hemisphaerica) AGTCGTCCAAGCCTAAATGCGAGACCAAAAAACACACGAAAAAAGTTGAA CTTCTCTCCATCAAAACAGCACGCCAAAAATACCGACACCATGCTTCAAT GCGAAGAATGTGACAAATGGCGTCTCGTATTTTCAAAAAAGAAGATCACT AAAGCCCAACCCCTATCTAAATGAAGAATGCAAGCCACTTCCTTTCTTGC CGGACCCTCAGCTTGGAGCGAATGGACATTACAAACCTTTTAAGGACATG TATGGCAAGGTCACTAAAGATAGAAACAAGACTACAAAGAAAGACCTCAA GAATTTGGATTCTCTCAAAGATTTCTTGAAGACACACTGCAAGGAGACTC ACTATGCTTTCCAGATCAAGAAATGCTCAAGTGGTGATTGTACACATTGT GGCTAAAGCAAGTAGCGTCAAGGAAGTTCGGGAGACATTGAAGTCAGATG AATTACGCGATGAAATGAAACAGTCACTTGCATTTCCAAAGGAGCTGCTC AACAACCAGATGAAACGATTGTCTTTAAAGGACAAGGATTTTCAAGTGTT CAATCCTGTCAATGAGGCGTCAATCGATCAATTGTGGGAGAAGTGCCAGG AAATAGACCCTGACCTACAGATGCTCATTGCTCTACGAACTGCACCGAGC AATTCTTCGGCCAATCCAGTAGAGCGCATAATGAGCATTGTAAACATTGG TTTGCAGGGAATCGGTGTGATGAGACAAAAGATGTCTGACGAGTTTGAGA AAGCAGTCTAGTCGTCCAAGCCTAAATGCGAGACCAAAAAACACACGAAA AAAGTTGAACTTCTCTCCATCAAAACAGCACGCCAAAAATACCGACACCA TGCTTCAATGCGAAGAATGTGACAAATGGCGTCTCGTATTTTCAAAAAAG AAGATCACTAAAGCCCAACCCCTATCTAAATGAAGAATGCAAGCCACTTC CTTTCTTGCCGGACCCTCAGCTTGGAGCGAATGGACATTACAAACCTTTT AAGGACATGTATGGCAAGGTCACTAAAGATAGAAACAAGACTACAAAGAA AGACCTCAAGAATTTGGATTCTCTCAAAGATTTCTTGAAGACACACTGCA AGGAGACTCACTATGCTTTCCAGATCAAGAAATGCTCAAGTGGTGATTGT ACACATTGTGGCTAAAGCAAGTAGCGTCAAGGAAGTTCGGGAGACATTGA AGTCAGATGAATTACGCGATGAAATGAAACAGTCACTTGCATTTCCAAAG GAGCTGCTCAACAACCAGATGAAACGATTGTCTTTAAAGGACAAGGATTT TCAAGTGTTCAATCCTGTCAATGAGGCGTCAATCGATCAATTGTGGGAGA AGTGCCAGGAAATAGACCCTGACCTACAGATGCTCATTGCTCTACGAACT GCACCGAGCAATTCTTCGGCCAATCCAGTAGAGCGCATAATGAGCATTGT AAACATTGGTTTGCAGGGAATCGGTGTGATGAGACAAAAGATGTCTGACG AGTTTGAGAAAGCAGTCTAGTCGTCCAAGCCTAAATGCGAGACCAAAAAA CACACGAAAAAAGTTGAACTTCTCTCCATCAAAACAGCACGCCAAAAATA CCGACACCATGCTTCAATGCGAAGAATGTGACAAATGGCGTCTCGTATTT TCAAAAAAGAAGATCACTAAAGCCCAACCCCTATCTAAATGAAGAATGCA AGCCACTTCCTTTCTTGCCGGACCCTCAGCTTGGAGCGAATGGACATTAC AAACCTTTTAAGGACATGTATGGCAAGGTCACTAAAGATAGAAACAAGAC TACAAAGAAAGACCTCAAGAATTTGGATTCTCTCAAAGATTTCTTGAAGA CACACTGCAAGGAGACTCACTATGCTTTCCAGATCAAGAAATGCTCAAGT GGTGATTGTACACATTGTGGCTAAAGCAAGTAGCGTCAAGGAAGTTCGGG AGACATTGAAGTCAGATGAATTACGCGATGAAATGAAACAGTCACTTGCA TTTCCAAAGGAGCTGCTCAACAACCAGATGAAACGATTGTCTTTAAAGGA CAAGGATTTTCAAGTGTTCAATCCTGTCAATGAGGCGTCAATCGATCAAT TGTGGGAGAAGTGCCAGGAAATAGACCCTGACCTACAGATGCTCATTGCT CTACGAACTGCACCGAGCAATTCTTCGGCCAATCCAGTAGAGCGCATAAT GAGCATTGTAAACATTGGTTTGCAGGGAATCGGTGTGATGAGACAAAAGA TGTCTGACGAGTTTGAGAAAGCAGTCTAGTCGTCCAAGCCTAAATGCGAG ACCAAAAAACACACGAAAAAAGTTGAACTTCTCTCCATCAAAACAGCACG CCAAAAATACCGACACCATGCTTCAATGCGAAGAATGTGACAAATGGCGT CTCGTATTTTCAAAAAAGAAGATCACTAAAGCCCAACCCCTATCTAAATG AAGAATGCAAGCCACTTCCTTTCTTGCCGGACCCTCAGCTTGGAGCGAAT GGACATTACAAACCTTTTAAGGACATGTATGGCAAGGTCACTAAAGATAG AAACAAGACTACAAAGAAAGACCTCAAGAATTTGGATTCTCTCAAAGATT TCTTGAAGACACACTGCAAGGAGACTCACTATGCTTTCCAGATCAAGAAA TGCTCAAGTGGTGATTGTACACATTGTGGCTAAAGCAAGTAGCGTCAAGG AAGTTCGGGAGACATTGAAGTCAGATGAATTACGCGATGAAATGAAACAG TCACTTGCATTTCCAAAGGAGCTGCTCAACAACCAGATGAAACGATTGTC TTTAAAGGACAAGGATTTTCAAGTGTTCAATCCTGTCAATGAGGCGTCAA TCGATCAATTGTGGGAGAAGTGCCAGGAAATAGACCCTGACCTACAGATG CTCATTGCTCTACGAACTGCACCGAGCAATTCTTCGGCCAATCCAGTAGA GCGCATAATGAGCATTGTAAACATTGGTTTGCAGGGAATCGGTGTGATGA GACAAAAGATGTCTGACGAGTTTGAGAAAGCAGTCTAGTCGTCCAAGCCT AAATGCGAGACCAAAAAACACACGAAAAAAGTTGAACTTCTCTCCATCAA AACAGCACGCCAAAAATACCGACACCATGCTTCAATGCGAAGAATGTGAC AAATGGCGTCTCGTATTTTCAAAAAAGAAGATCACTAAAGCCCAACCCCT ATCTAAATGAAGAATGCAAGCCACTTCCTTTCTTGCCGGACCCTCAGCTT GGAGCGAATGGACATTACAAACCTTTTAAGGACATGTATGGCAAGGTCAC TAAAGATAGAAACAAGACTACAAAGAAAGACCTCAAGAATTTGGATTCTC TCAAAGATTTCTTGAAGACACACTGCAAGGAGACTCACTATGCTTTCCAG ATCAAGAAATGCTCAAGTGGTGATTGTACACATTGTGGCTAAAGCAAGTA GCGTCAAGGAAGTTCGGGAGACATTGAAGTCAGATGAATTACGCGATGAA ATGAAACAGTCACTTGCATTTCCAAAGGAGCTGCTCAACAACCAGATGAA ACGATTGTCTTTAAAGGACAAGGATTTTCAAGTGTTCAATCCTGTCAATG AGGCGTCAATCGATCAATTGTGGGAGAAGTGCCAGGAAATAGACCCTGAC CTACAGATGCTCATTGCTCTACGAACTGCACCGAGCAATTCTTCGGCCAA TCCAGTAGAGCGCATAATGAGCATTGTAAACATTGGTTTGCAGGGAATCG GTGTGATGAGACAAAAGATGTCTGACGAGTTTGAGAAAGCAGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065858-exon-scaffold_447-1575043694:262652..262920 | TCONS_00065858-exon-scaffold_447-1575043694:262652..262920 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:261298..261430 | TCONS_00065858-exon-scaffold_447-1575043694:261298..261430 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:260917..261159 | TCONS_00065858-exon-scaffold_447-1575043694:260917..261159 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:260489..260706 | TCONS_00065858-exon-scaffold_447-1575043694:260489..260706 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:260182..260312 | TCONS_00065858-exon-scaffold_447-1575043694:260182..260312 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:259907..260018 | TCONS_00065858-exon-scaffold_447-1575043694:259907..260018 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1575043694:259604..259762 | TCONS_00065858-exon-scaffold_447-1575043694:259604..259762 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:262652..262920 | TCONS_00065858-exon-scaffold_447-1510915933:262652..262920 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:261298..261430 | TCONS_00065858-exon-scaffold_447-1510915933:261298..261430 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:260917..261159 | TCONS_00065858-exon-scaffold_447-1510915933:260917..261159 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:260489..260706 | TCONS_00065858-exon-scaffold_447-1510915933:260489..260706 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:260182..260312 | TCONS_00065858-exon-scaffold_447-1510915933:260182..260312 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:259907..260018 | TCONS_00065858-exon-scaffold_447-1510915933:259907..260018 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1510915933:259604..259762 | TCONS_00065858-exon-scaffold_447-1510915933:259604..259762 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:262652..262920 | TCONS_00065858-exon-scaffold_447-1491911889:262652..262920 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:261298..261430 | TCONS_00065858-exon-scaffold_447-1491911889:261298..261430 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:260917..261159 | TCONS_00065858-exon-scaffold_447-1491911889:260917..261159 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:260489..260706 | TCONS_00065858-exon-scaffold_447-1491911889:260489..260706 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:260182..260312 | TCONS_00065858-exon-scaffold_447-1491911889:260182..260312 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:259907..260018 | TCONS_00065858-exon-scaffold_447-1491911889:259907..260018 | Clytia hemisphaerica | exon |
TCONS_00065858-exon-scaffold_447-1491911889:259604..259762 | TCONS_00065858-exon-scaffold_447-1491911889:259604..259762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_447 | supercontig | scaffold_447:259604..262920 - |
Blast
The following BLAST results are available for this feature:
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