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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065850 ID=TCONS_00065850|Name=TCONS_00065850|organism=Clytia hemisphaerica|type=transcript|length=1470bp
TTCAGACAGACCTAATTCTCAGACTTCACCTAGCATGGTCAAAAATAAga
aggaaaaatataaaaaatgataaactGTTGTATTGTATGTAGTAACATAA
GCAAATTTTTTGAGTTAATATGGAAGTTACCTGAGCTGCAAGTTTAAATG
TCATCCTATTTAGTCGATGTGTTCTCTTCTTAATTTGATCATGTAAAGCC
CTGGGATTTNTTGATCATGTAAAGCCCTGGGATTTTGGTATTCTCGAACT
CCCAGAGTTGTACCACACGTATCCAACTGATCGAGTGTTTGTCCAGCTAA
AAGGAAAGGAATTAGACCTTacaatttcaatcatttttttgaATCTCAAC
ACCTGGTAGTGATAATACTATTTCAAACAAATTATCATTAATAATATCTA
AGGTATATATCCTCTGGAAATAATAGACAAACCATTGATTTACAAAAGTT
TTTGGTGCTTCTATTTCCATGAGAGTTTCCAAAATTGTTTTGTACTCACA
AatgaaatagagctttctatCCAAAGCACATCAGATTAATACTGAAGAAA
TGGACTTTATCTTCCTTATTCTTTGAGTTTATAAAATGAACGGTTTGTAC
AATGCTCCACCAGATACCAAACACCTGACCTTCAAACTCAATAATTCCAA
CACTTTAACAGTTCCCAGACTACAGGAAATAACTCATCACTTAATGCAGA
TGCAGtagggaaaaaacaaaaacaaaagtaaatccCGTAAGTAGTACAAT
AAAAGCTAAAACATGTGAGGTCGATTGTCTTGCTTGTTGGCCCTCCTCAT
AACATTATCTTTCCAACTTACAGATTTCCTCATTTATTTCACCCAATAAT
AAAACCaataacaaaatataaagtCTTCAGCATCAATAATTAGACAAGCC
ACACGATCTCTTTAATATTGTGAAATGTCCTCTCCATCAACAAAATCTGC
GAAACCACCAGTATCAATACCTGGTGTTGCTTTAACACGCTGAGTTGATT
TATGCTTGACTTTCTATTTCTTCCTACTTTTTCAGCTTGGGTGCTTCTGG
CTGTCTGGGTGCCTTTCAACGCTGATTCAAACTTCGTACAAACAACTCTA
CACTTTTCACAGATTTTCTCATCTCAGGATGAAAATCAACAGAATCATTA
GTATAACATCAACTCTCAAAGCATTGAAAGCATCAAAAGAAGCTGCCTCT
TTAAGTTTTCTACGGTCTTTTTATGATGAATTGGCTTATCATGCACCGGC
CGCATAATAATCTACACTACGTTTTTATTTTACTAAGCCAAACCAAAGGG
TAAATTTGTTCGATGAAATTCAAATTCTTCTAAGAAGaagaagacttcca
tctcttccttcagtaataaaaaagaaaaaatcaagaagcaaacttttcga
aattcactGCCAGAGTGAAAGACAACAAGAACCTGAACCTAGTCAGTCGG
AGTTGAGTACATGAAAAANN Run BLAST on NCBI transcript from alignment at scaffold_446:110861..112330 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065850 ID=TCONS_00065850|Name=TCONS_00065850|organism=Clytia hemisphaerica|type=transcript|length=1470bp|location=Sequence derived from alignment at scaffold_446:110861..112330 (Clytia hemisphaerica)
NNTTTTTCATGTACTCAACTCCGACTGACTAGGTTCAGGTTCTTGTTGTC
TTTCACTCTGGCagtgaatttcgaaaagtttgcttcttgattttttcttt
tttattactgaaggaagagatggaagtcttcttCTTCTTAGAAGAATTTG
AATTTCATCGAACAAATTTACCCTTTGGTTTGGCTTAGTAAAATAAAAAC
GTAGTGTAGATTATTATGCGGCCGGTGCATGATAAGCCAATTCATCATAA
AAAGACCGTAGAAAACTTAAAGAGGCAGCTTCTTTTGATGCTTTCAATGC
TTTGAGAGTTGATGTTATACTAATGATTCTGTTGATTTTCATCCTGAGAT
GAGAAAATCTGTGAAAAGTGTAGAGTTGTTTGTACGAAGTTTGAATCAGC
GTTGAAAGGCACCCAGACAGCCAGAAGCACCCAAGCTGAAAAAGTAGGAA
GAAATAGAAAGTCAAGCATAAATCAACTCAGCGTGTTAAAGCAACACCAG
GTATTGATACTGGTGGTTTCGCAGATTTTGTTGATGGAGAGGACATTTCA
CAATATTAAAGAGATCGTGTGGCTTGTCTAATTATTGATGCTGAAGactt
tatattttgttattGGTTTTATTATTGGGTGAAATAAATGAGGAAATCTG
TAAGTTGGAAAGATAATGTTATGAGGAGGGCCAACAAGCAAGACAATCGA
CCTCACATGTTTTAGCTTTTATTGTACTACTTACGggatttacttttgtt
tttgttttttccctaCTGCATCTGCATTAAGTGATGAGTTATTTCCTGTA
GTCTGGGAACTGTTAAAGTGTTGGAATTATTGAGTTTGAAGGTCAGGTGT
TTGGTATCTGGTGGAGCATTGTACAAACCGTTCATTTTATAAACTCAAAG
AATAAGGAAGATAAAGTCCATTTCTTCAGTATTAATCTGATGTGCTTTGG
atagaaagctctatttcatTTGTGAGTACAAAACAATTTTGGAAACTCTC
ATGGAAATAGAAGCACCAAAAACTTTTGTAAATCAATGGTTTGTCTATTA
TTTCCAGAGGATATATACCTTAGATATTATTAATGATAATTTGTTTGAAA
TAGTATTATCACTACCAGGTGTTGAGATtcaaaaaaatgattgaaattgt
AAGGTCTAATTCCTTTCCTTTTAGCTGGACAAACACTCGATCAGTTGGAT
ACGTGTGGTACAACTCTGGGAGTTCGAGAATACCAAAATCCCAGGGCTTT
ACATGATCAANAAATCCCAGGGCTTTACATGATCAAATTAAGAAGAGAAC
ACATCGACTAAATAGGATGACATTTAAACTTGCAGCTCAGGTAACTTCCA
TATTAACTCAAAAAATTTGCTTATGTTACTACATACAATACAACagttta
tcattttttatatttttccttcTTATTTTTGACCATGCTAGGTGAAGTCT
GAGAATTAGGTCTGTCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065850-exon-scaffold_446-1491911889:110861..112330 | TCONS_00065850-exon-scaffold_446-1491911889:110861..112330 | Clytia hemisphaerica | exon |
| TCONS_00065850-exon-scaffold_446-1510915933:110861..112330 | TCONS_00065850-exon-scaffold_446-1510915933:110861..112330 | Clytia hemisphaerica | exon |
| TCONS_00065850-exon-scaffold_446-1575043694:110861..112330 | TCONS_00065850-exon-scaffold_446-1575043694:110861..112330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:110861..112330 . |
Blast
The following BLAST results are available for this feature:
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