TCONS_00065849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065849
Unique NameTCONS_00065849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065849 ID=TCONS_00065849|Name=TCONS_00065849|organism=Clytia hemisphaerica|type=transcript|length=641bp
TATATATATGCCATACTTGACGAGACGATGGAGACTGTGGTACAAGAAAG
ATTTGCACAGACTATATCAACTGTTGATCTAGTAAAATATTATTCCAGTT
TAAAAACTCTCACAAACgatgaaatttgtaaactaATCAATGTTCaccat
caaaaaaatttaacaccAAGACAGTTGAAATACATACGTCAACAAAATGG
AATTCGGAGGTATAACTATATATCAATGGAAGATTTGAGAAGTATCATCT
TGAACGAGTTGCAAACGTCAAATTCCCGTGTTGGATATCGCCAAATGACT
GAGTTCATTAATTTGAAATACAATGTGTTAGTTGCAAAGGAAAAAGTCCG
CCGCTTACTGAGGATTTTGGATCCCGAAGGAGTCCAAGAAAGATCCAGAA
ATGTGATTAGGAGAAGAATGTACCAAACTATAGGACCAAACGATATTTGG
CATGTGGACGGAAATGATAAATTGAAAAAGTGGGGATTTTGTATACATGG
AGCAGTGGATGGGTTCAGCAGGAAGTTGCTATGGTTGAAAGTATCAACAA
CCAACAATGATCCTCTTGTTATTGCCAATTTTTATCTGGACTTtgttaac
aataaaaagattaCGCCAAAAGTGGTTCGGTTTGATAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00065849-protein

>TCONS_00065849-protein ID=TCONS_00065849-protein|Name=TCONS_00065849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
YIYAILDETMETVVQERFAQTISTVDLVKYYSSLKTLTNDEICKLINVHH
QKNLTPRQLKYIRQQNGIRRYNYISMEDLRSIILNELQTSNSRVGYRQMT
EFINLKYNVLVAKEKVRRLLRILDPEGVQERSRNVIRRRMYQTIGPNDIW
HVDGNDKLKKWGFCIHGAVDGFSRKLLWLKVSTTNNDPLVIANFYLDFVN
NKKITPKVVRFDR
Run BLAST on NCBI

transcript from alignment at scaffold_446:101990..102630

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065849 ID=TCONS_00065849|Name=TCONS_00065849|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at scaffold_446:101990..102630 (Clytia hemisphaerica)
CCTCTATCAAACCGAACCACTTTTGGCGtaatctttttattgttaacaAA
GTCCAGATAAAAATTGGCAATAACAAGAGGATCATTGTTGGTTGTTGATA
CTTTCAACCATAGCAACTTCCTGCTGAACCCATCCACTGCTCCATGTATA
CAAAATCCCCACTTTTTCAATTTATCATTTCCGTCCACATGCCAAATATC
GTTTGGTCCTATAGTTTGGTACATTCTTCTCCTAATCACATTTCTGGATC
TTTCTTGGACTCCTTCGGGATCCAAAATCCTCAGTAAGCGGCGGACTTTT
TCCTTTGCAACTAACACATTGTATTTCAAATTAATGAACTCAGTCATTTG
GCGATATCCAACACGGGAATTTGACGTTTGCAACTCGTTCAAGATGATAC
TTCTCAAATCTTCCATTGATATATAGTTATACCTCCGAATTCCATTTTGT
TGACGTATGTATTTCAACTGTCTTggtgttaaatttttttgatggtGAAC
ATTGATtagtttacaaatttcatcGTTTGTGAGAGTTTTTAAACTGGAAT
AATATTTTACTAGATCAACAGTTGATATAGTCTGTGCAAATCTTTCTTGT
ACCACAGTCTCCATCGTCTCGTCAAGTATGGCATATATATA

Coding sequence (CDS) from alignment at scaffold_446:101990..102630

>TCONS_00065849 ID=TCONS_00065849|Name=TCONS_00065849|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_446:101990..102630 (Clytia hemisphaerica)
TCTATCAAACCGAACCACTTTTGGCGtaatctttttattgttaacaAAGT
CCAGATAAAAATTGGCAATAACAAGAGGATCATTGTTGGTTGTTGATACT
TTCAACCATAGCAACTTCCTGCTGAACCCATCCACTGCTCCATGTATACA
AAATCCCCACTTTTTCAATTTATCATTTCCGTCCACATGCCAAATATCGT
TTGGTCCTATAGTTTGGTACATTCTTCTCCTAATCACATTTCTGGATCTT
TCTTGGACTCCTTCGGGATCCAAAATCCTCAGTAAGCGGCGGACTTTTTC
CTTTGCAACTAACACATTGTATTTCAAATTAATGAACTCAGTCATTTGGC
GATATCCAACACGGGAATTTGACGTTTGCAACTCGTTCAAGATGATACTT
CTCAAATCTTCCATTGATATATAGTTATACCTCCGAATTCCATTTTGTTG
ACGTATGTATTTCAACTGTCTTggtgttaaatttttttgatggtGAACAT
TGATtagtttacaaatttcatcGTTTGTGAGAGTTTTTAAACTGGAATAA
TATTTTACTAGATCAACAGTTGATATAGTCTGTGCAAATCTTTCTTGTAC
CACAGTCTCCATCGTCTCGTCAAGTATGGCATATATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041249XLOC_041249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065849-exon-scaffold_446-1491911889:101990..102630TCONS_00065849-exon-scaffold_446-1491911889:101990..102630Clytia hemisphaericaexon
TCONS_00065849-exon-scaffold_446-1510915933:101990..102630TCONS_00065849-exon-scaffold_446-1510915933:101990..102630Clytia hemisphaericaexon
TCONS_00065849-exon-scaffold_446-1575043694:101990..102630TCONS_00065849-exon-scaffold_446-1575043694:101990..102630Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065849-proteinTCONS_00065849-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:101990..102630 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.223828	0.140786	0.0909718	2.11569	1.08476	1.5517	0.976192	1.2469	1.1618	0.80992	0.607472	0.388021	0.446298	0.279926	0.0721884	0.0889302	0.12638	0.0448775	0	0	0.0629958	0	0.0440073	0.211929	0	0	0	0.231724	0.185738
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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