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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065847 ID=TCONS_00065847|Name=TCONS_00065847|organism=Clytia hemisphaerica|type=transcript|length=1730bp
agcgtttgggtaaacgagacaaaactctaaaaaagctggtgttttgacgc
gcttccgtgctctcgaaatatcgcggtttgagacgcactggcaaatgctc
accccgttcatttgccaggatgtgcctgactgtggGTGTTTGGGTACttt
ggcagttacatcaatatgccttcttacctgtctttaaaaatataaataaN
ttaacaaaagagacttaactcgatgttacaatccaattattgaaagtttg
tctcggcctttttataatgagcgagacatacgttctctgattacgcaatt
tcatattgacattttcgaggcattttgatgtaactgtttggGTATCAcgt
ttttatgatatttttcattATTGCTGATATGATATAAATGTGGGATATCG
TCAATTTGGGTGTTACTTTTTTAAGTAGGTACAACATTTTCTGTTCATTA
TTGTATACTGTATCAGACTGTATCTTGGtttaatgtcgacatccctcctc
taattccgactaCCTTTTTAtcagaggaataatcctttttcaatcagtga
ttcaagctttcatattatccctgtctctaaaaaagggtgtcggtaTTAGA
TAAGGGATACgtcaatattagaccaacttacagatGTTTCGGCGAACgtg
acagtcttttgaataaataattactccacatacattacattcccctcagc
caataaaaacatgataaattatcttgtctctagtaAACTGCTGTGGAGTA
Tatagttattcaaaagattgccaaaacaactattgatttaaaagttataa
attcataataaaGTATATAACTTGCAACATTTTTTTGAGAACAAGGCACT
CTGCCATCTGCCAGAATTGAATAAAAGTCTTTAGGATTATGATAAGAATA
CTTGTCAGTAGTAAAGGTTGAATttaaatcattaatttttatCTGCTACA
TATTGGGTTGAATTTCAACTAGTcctttgaaaaaatttgcaatCGCGCAT
ATTCCCAACTctgacaaaaatgaaaaagaggCAAAAATTCAGTCAATGTG
AAAATTTACATCTTTTATTTGCAATTAAATTGAAGCATAAGTTTCCTCTT
AGAATGGGCTTTGCATTTTCCACAATTTTTTATCCACTGATTAATAATCT
GCTAcattaaaaaattatatatattataAAGTTGATGGTCTGAAAATTGA
CAATTGAGTCAAATCTTCTTTAACAATCACATAAATCTAATTCCCTAATA
GCAAAGTATAGTATTTTCCAGAATATACAAAACTTGCaaatatgaaatta
tttttttttaagttttatataAGCCTTTACTAATCGATGCATTTATTATT
GATTTCACTTGGTTTTTAGTATTGATTTTTAATATTGATTTTTAGTATTG
GTTTTATAACTGTCAGCATAGAAACTTAAATTgattattttaaaaacaaa
taaatgtcTTTTAAATCTAATTAATTTTCCAAGTGATTTATTTTATGCAA
TCAttagtaaaatattttaaattttaaaaatgataaatttatgATCATTA
TTACTTTACTCAGTAGagtgtatttttatgaattttactgTTTTGTCTTT
AATTTAATAATAATTACCATTAAAAGTGTAATTGTGTTTTACTTTAAATT
GATATATGAATATGGTTTTACAAATATTGTCTTGTTCCCTGCACTTGact
attttgatttttgccAGACGTCTGGTTAAG Run BLAST on NCBI transcript from alignment at scaffold_446:90259..91988 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065847 ID=TCONS_00065847|Name=TCONS_00065847|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at scaffold_446:90259..91988 (Clytia hemisphaerica)
CTTAACCAGACGTCTggcaaaaatcaaaatagtCAAGTGCAGGGAACAAG
ACAATATTTGTAAAACCATATTCATATATCAATTTAAAGTAAAACACAAT
TACACTTTTAATGGTAATTATTATTAAATTAAAGACAAAAcagtaaaatt
cataaaaatacactCTACTGAGTAAAGTAATAATGATcataaatttatca
tttttaaaatttaaaatattttactaaTGATTGCATAAAATAAATCACTT
GGAAAATTAATTAGATTTAAAAgacatttatttgtttttaaaataatcAA
TTTAAGTTTCTATGCTGACAGTTATAAAACCAATACTAAAAATCAATATT
AAAAATCAATACTAAAAACCAAGTGAAATCAATAATAAATGCATCGATTA
GTAAAGGCTtatataaaacttaaaaaaaaataatttcatatttGCAAGTT
TTGTATATTCTGGAAAATACTATACTTTGCTATTAGGGAATTAGATTTAT
GTGATTGTTAAAGAAGATTTGACTCAATTGTCAATTTTCAGACCATCAAC
TTtataatatatataattttttaatgTAGCAGATTATTAATCAGTGGATA
AAAAATTGTGGAAAATGCAAAGCCCATTCTAAGAGGAAACTTATGCTTCA
ATTTAATTGCAAATAAAAGATGTAAATTTTCACATTGACTGAATTTTTGc
ctctttttcatttttgtcagAGTTGGGAATATGCGCGattgcaaattttt
tcaaaggACTAGTTGAAATTCAACCCAATATGTAGCAGataaaaattaat
gatttaaATTCAACCTTTACTACTGACAAGTATTCTTATCATAATCCTAA
AGACTTTTATTCAATTCTGGCAGATGGCAGAGTGCCTTGTTCTCAAAAAA
ATGTTGCAAGTTATATACtttattatgaatttataacttttaaatcaata
gttgttttggcaatcttttgaataactatATACTCCACAGCAGTTtacta
gagacaagataatttatcatgtttttattggctgaggggaatgtaatgta
tgtggagtaattatttattcaaaagactgtcacGTTCGCCGAAACatctg
taagttggtctaatattgacGTATCCCTTATCTAAtaccgacaccctttt
ttagagacagggataatatgaaagcttgaatcactgattgaaaaaggatt
attcctctgaTAAAAAGGtagtcggaattagaggagggatgtcgacatta
aaCCAAGATACAGTCTGATACAGTATACAATAATGAACAGAAAATGTTGT
ACCTACTTAAAAAAGTAACACCCAAATTGACGATATCCCACATTTATATC
ATATCAGCAATaatgaaaaatatcataaaaacgTGATACccaaacagtta
catcaaaatgcctcgaaaatgtcaatatgaaattgcgtaatcagagaacg
tatgtctcgctcattataaaaaggccgagacaaactttcaataattggat
tgtaacatcgagttaagtctcttttgttaaNttatttatatttttaaaga
caggtaagaaggcatattgatgtaactgccaaaGTACCCAAACACccaca
gtcaggcacatcctggcaaatgaacggggtgagcatttgccagtgcgtct
caaaccgcgatatttcgagagcacggaagcgcgtcaaaacaccagctttt
ttagagttttgtctcgtttacccaaacgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065847-exon-scaffold_446-1491911889:90259..91988 | TCONS_00065847-exon-scaffold_446-1491911889:90259..91988 | Clytia hemisphaerica | exon |
| TCONS_00065847-exon-scaffold_446-1510915933:90259..91988 | TCONS_00065847-exon-scaffold_446-1510915933:90259..91988 | Clytia hemisphaerica | exon |
| TCONS_00065847-exon-scaffold_446-1575043694:90259..91988 | TCONS_00065847-exon-scaffold_446-1575043694:90259..91988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:90259..91988 . |
Blast
The following BLAST results are available for this feature:
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