TCONS_00065846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065846
Unique NameTCONS_00065846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065846 ID=TCONS_00065846|Name=TCONS_00065846|organism=Clytia hemisphaerica|type=transcript|length=211bp
ATTGAAAGCAGTGATTGATTCAAAACCTGGTTGTAATTTCCACTTGATCG
TTTATGGAACGCCAGCGGAAGAAGGGGGCGGTGGAAAGTGTTTGATGATC
GAAAAGGGCGTTTTTGATGAAGCAGATATTTGTATGATGTCTCATCCTGC
GCCATATGAAATTCCAAATCCGATTTGGTTAGCTAGTTCTCAATATAGAA
TTGTTTTCACT
Run BLAST on NCBI

transcript from alignment at scaffold_446:29930..30140

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065846 ID=TCONS_00065846|Name=TCONS_00065846|organism=Clytia hemisphaerica|type=transcript|length=211bp|location=Sequence derived from alignment at scaffold_446:29930..30140 (Clytia hemisphaerica)
AGTGAAAACAATTCTATATTGAGAACTAGCTAACCAAATCGGATTTGGAA
TTTCATATGGCGCAGGATGAGACATCATACAAATATCTGCTTCATCAAAA
ACGCCCTTTTCGATCATCAAACACTTTCCACCGCCCCCTTCTTCCGCTGG
CGTTCCATAAACGATCAAGTGGAAATTACAACCAGGTTTTGAATCAATCA
CTGCTTTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041246XLOC_041246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065846-exon-scaffold_446-1491911889:29930..30140TCONS_00065846-exon-scaffold_446-1491911889:29930..30140Clytia hemisphaericaexon
TCONS_00065846-exon-scaffold_446-1510915933:29930..30140TCONS_00065846-exon-scaffold_446-1510915933:29930..30140Clytia hemisphaericaexon
TCONS_00065846-exon-scaffold_446-1575043694:29930..30140TCONS_00065846-exon-scaffold_446-1575043694:29930..30140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:29930..30140 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.357	11.0749	1.60738	6.29026	1.91445	3.02564	23.727	20.5043	17.9444	5.92721	18.6976	16.0729	6.60905	13.7271	15.3161	21.627	14.9199	18.5694	15.091	6.31664	5.49031	2.00848	4.88315	8.87899	39.629	24.4855	1.94659	6.23237	3.15135	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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