TCONS_00065844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065844
Unique NameTCONS_00065844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065844 ID=TCONS_00065844|Name=TCONS_00065844|organism=Clytia hemisphaerica|type=transcript|length=724bp
CATTTCCTTTTTTACAGGTGATCTACGAATTAACAGATGTTGAATCAGAA
TCGTTAACATCAATGTATGGCCTATTTTATCCTGGTAAGGAAATTGAAGT
TCCCGTTGTGTGTTGGAAAACTTCAGAGGTTATTTGCAATGATGTGTTAT
ATGGTGCAGAGACCTCAAGAAGTGTCCGATCGTCCAATGTCGTTGCCTAT
TGGTGCGGAGCAAACGGAAATGTACAAGCATACGAAAGCATGTATCATTC
CCCAAGACCGGGGAAAATTATTTATTTCATCAAACACTCGCTATTACTTG
ACGGAGTGTATACTGAACACATTCTTGCACGTGTCGATTGGTACCTACGC
TCGCAAAACTATGATGGTAGTGTTATCTATGGAAAACCGACAATGATATT
TCGTGATCGGTTATACGAACAATCAGGAAGTGCATCGTTCATTCCTGTTC
AACGTATTTTTAGCAAATATGTTTTCAGCAAAACTGAAATGAACGGTAAT
GAGATGCTGGTAATCGTTCCACGAGTCAGGCATTTGAGCATTTAATGAAA
CTTTATACTTTTCTTTTGTCGATAATTGATGTTACTCTGTGATGAAGATT
AGAGATCGAGATTCTCTCGAAGTTCAGAACAGAACAAAATATGTTTTACT
TGTtacttataaacaaaaatatcttcagtGCCTTGTTTACTATAAGAGTT
TGTGTAATTTGTCTTCAAGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00065844-protein

>TCONS_00065844-protein ID=TCONS_00065844-protein|Name=TCONS_00065844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
FPFLQVIYELTDVESESLTSMYGLFYPGKEIEVPVVCWKTSEVICNDVLY
GAETSRSVRSSNVVAYWCGANGNVQAYESMYHSPRPGKIIYFIKHSLLLD
GVYTEHILARVDWYLRSQNYDGSVIYGKPTMIFRDRLYEQSGSASFIPVQ
RIFSKYVFSKTEMNGNEMLVIVPRVRHLSI
Run BLAST on NCBI

transcript from alignment at scaffold_446:2234..2957

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065844 ID=TCONS_00065844|Name=TCONS_00065844|organism=Clytia hemisphaerica|type=transcript|length=724bp|location=Sequence derived from alignment at scaffold_446:2234..2957 (Clytia hemisphaerica)
CTTTTCTTGAAGACAAATTACACAAACTCTTATAGTAAACAAGGCactga
agatatttttgtttataagtaACAAGTAAAACATATTTTGTTCTGTTCTG
AACTTCGAGAGAATCTCGATCTCTAATCTTCATCACAGAGTAACATCAAT
TATCGACAAAAGAAAAGTATAAAGTTTCATTAAATGCTCAAATGCCTGAC
TCGTGGAACGATTACCAGCATCTCATTACCGTTCATTTCAGTTTTGCTGA
AAACATATTTGCTAAAAATACGTTGAACAGGAATGAACGATGCACTTCCT
GATTGTTCGTATAACCGATCACGAAATATCATTGTCGGTTTTCCATAGAT
AACACTACCATCATAGTTTTGCGAGCGTAGGTACCAATCGACACGTGCAA
GAATGTGTTCAGTATACACTCCGTCAAGTAATAGCGAGTGTTTGATGAAA
TAAATAATTTTCCCCGGTCTTGGGGAATGATACATGCTTTCGTATGCTTG
TACATTTCCGTTTGCTCCGCACCAATAGGCAACGACATTGGACGATCGGA
CACTTCTTGAGGTCTCTGCACCATATAACACATCATTGCAAATAACCTCT
GAAGTTTTCCAACACACAACGGGAACTTCAATTTCCTTACCAGGATAAAA
TAGGCCATACATTGATGTTAACGATTCTGATTCAACATCTGTTAATTCGT
AGATCACCTGTAAAAAAGGAAATG

Coding sequence (CDS) from alignment at scaffold_446:2234..2957

>TCONS_00065844 ID=TCONS_00065844|Name=TCONS_00065844|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_446:2234..2957 (Clytia hemisphaerica)
TTAAATGCTCAAATGCCTGACTCGTGGAACGATTACCAGCATCTCATTAC
CGTTCATTTCAGTTTTGCTGAAAACATATTTGCTAAAAATACGTTGAACA
GGAATGAACGATGCACTTCCTGATTGTTCGTATAACCGATCACGAAATAT
CATTGTCGGTTTTCCATAGATAACACTACCATCATAGTTTTGCGAGCGTA
GGTACCAATCGACACGTGCAAGAATGTGTTCAGTATACACTCCGTCAAGT
AATAGCGAGTGTTTGATGAAATAAATAATTTTCCCCGGTCTTGGGGAATG
ATACATGCTTTCGTATGCTTGTACATTTCCGTTTGCTCCGCACCAATAGG
CAACGACATTGGACGATCGGACACTTCTTGAGGTCTCTGCACCATATAAC
ACATCATTGCAAATAACCTCTGAAGTTTTCCAACACACAACGGGAACTTC
AATTTCCTTACCAGGATAAAATAGGCCATACATTGATGTTAACGATTCTG
ATTCAACATCTGTTAATTCGTAGATCACCTGTAAAAAAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041244XLOC_041244Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065844-proteinTCONS_00065844-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065844-exon-scaffold_446-1491911889:2234..2957TCONS_00065844-exon-scaffold_446-1491911889:2234..2957Clytia hemisphaericaexon
TCONS_00065844-exon-scaffold_446-1510915933:2234..2957TCONS_00065844-exon-scaffold_446-1510915933:2234..2957Clytia hemisphaericaexon
TCONS_00065844-exon-scaffold_446-1575043694:2234..2957TCONS_00065844-exon-scaffold_446-1575043694:2234..2957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:2234..2957 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0688888	0	0	0	0.278701	0.293645	0.265702	0.165832	0.348308	0.431435	0.76773	0.321157	0.916316	0.856443	0.782347	0.335831	0.67229	0.530058	1.46461	2.29891	0.865873	1.26703	0.23696	0.359051	0.369814	0.396061	0.283381	0.302432	0.0764612	0.0779019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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