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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065843 ID=TCONS_00065843|Name=TCONS_00065843|organism=Clytia hemisphaerica|type=transcript|length=1671bp
CCAACCTTTCGTTGAGAGAGGTTGGATAGTTATAGATTGCCTGTTGGATT
TCTAAAAGTGGTAAGGTCACCAAGTGGTAAAAAGCTGCATTTTTCTTGTC
TCTGGCTTGAGCTGAATTAGATAAACTTCTATTCTAAAGCATAAAGATCT
TTTAAATTTAACTTAGTTTTGCTGGATAATCACTTTAAGTATGGCCCAAA
ATCTGAAGATATGTGAAATTGATCCAGAGCTTTTAGCAAAGGTGAAGAAG
TTTCGATTTCGAAAAGAACCAAACAATGCCGCAGTGGTTATGAAGATTGA
TATTGAGACATCTACAGTTATCGAAGATGAGTCTTATGAAGATGTGGATA
TCGAAGAATTGGTGAGTGAGCTCCCTGCTCATCTTCCAAGGTATATTGCT
TTGAGTTATGTGAAAAAACATGACGATGGAAGAGTTTCTTATCCATTGAT
CTTTGTGTTCATTAGTCCTAGTGGCATTAAACCTGCGCTTCAAATGACGT
ATGCTGGTAGCAAAACCTCATTAGTAAATGCCTTGGGGTTCACCAAAGTT
TTTGAATTGAGAGATGTTGAAGAATTCACTGAAGAATGGCTATTAGAAAA
ATTGAAATTCTTTAAATAGAATTTATACTGAAATAATTTATATGAATTTA
AATTATGCTAGCTATCTTTTTTAGGCAAATTTTATTAGAAATTTCTAAAT
TAATATTACAGTATTTTCGCTTGGGTCAGTCAGGCACATCCTGGCAAATG
AACGGGGTATTTTTCACTTGCGACCATTGGCAAATGAACGGGGTCGAAAA
CAAAAGTGATGTAATAGCACTGAATACCCCACGCAATTGAACCGGGTTgg
aaatattttgcttcatttcaaagaactgcatagatgaaattttttttcca
tgggtcaattttgtcttcgaagattgaagaaacttttaacgaaaaataaa
gttcccagttttcttccttttttcccattttcagtttgaagctcattttt
attcattttcacgcttttagcctgagacgtcctatctcatttacactggg
tgacgaataccccatgcaaacaGTGCgacacaaacagccatataaacaaa
actcaacattctcacaaaagttgtctttttgatttcccaaacatttgtct
caagcgttcccttccacaataatttatgtaattgcaattgcggtcagtcc
acagtcggcttcaacatatacacgtgtttttatttacgtgaccgaagtgc
ctactaaaacaatccgggggtaaatagcgaagcaacacagcagattattc
gtaaatatcttttggcattgacaatcaaatataatatattatactatatt
tccttaattcaaaaatcaaaaattcatttttcattcgcgaaaaaataaaa
ataaaagaataatgaattaatattacatactaagacgcccccgtctttta
ctctcatttAATTTCCAGTCTCggcacgtgcaaaacgcccgtccgcccaa
tatccacccaatcagcttaaattcactttaattgtcctttgacattcaaa
aaatagtatttaaaaattaggaatttatgataattacaaaaaacaaaaag
tttgatacttcattagtgaaatattcaataaattcctggtttcaattttc
agtgggcgttcttCTAGGGCT Run BLAST on NCBI transcript from alignment at scaffold_446:92358..94028- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065843 ID=TCONS_00065843|Name=TCONS_00065843|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at scaffold_446:92358..94028- (Clytia hemisphaerica)
CCAACCTTTCGTTGAGAGAGGTTGGATAGTTATAGATTGCCTGTTGGATT
TCTAAAAGTGGTAAGGTCACCAAGTGGTAAAAAGCTGCATTTTTCTTGTC
TCTGGCTTGAGCTGAATTAGATAAACTTCTATTCTAAAGCATAAAGATCT
TTTAAATTTAACTTAGTTTTGCTGGATAATCACTTTAAGTATGGCCCAAA
ATCTGAAGATATGTGAAATTGATCCAGAGCTTTTAGCAAAGGTGAAGAAG
TTTCGATTTCGAAAAGAACCAAACAATGCCGCAGTGGTTATGAAGATTGA
TATTGAGACATCTACAGTTATCGAAGATGAGTCTTATGAAGATGTGGATA
TCGAAGAATTGGTGAGTGAGCTCCCTGCTCATCTTCCAAGGTATATTGCT
TTGAGTTATGTGAAAAAACATGACGATGGAAGAGTTTCTTATCCATTGAT
CTTTGTGTTCATTAGTCCTAGTGGCATTAAACCTGCGCTTCAAATGACGT
ATGCTGGTAGCAAAACCTCATTAGTAAATGCCTTGGGGTTCACCAAAGTT
TTTGAATTGAGAGATGTTGAAGAATTCACTGAAGAATGGCTATTAGAAAA
ATTGAAATTCTTTAAATAGAATTTATACTGAAATAATTTATATGAATTTA
AATTATGCTAGCTATCTTTTTTAGGCAAATTTTATTAGAAATTTCTAAAT
TAATATTACAGTATTTTCGCTTGGGTCAGTCAGGCACATCCTGGCAAATG
AACGGGGTATTTTTCACTTGCGACCATTGGCAAATGAACGGGGTCGAAAA
CAAAAGTGATGTAATAGCACTGAATACCCCACGCAATTGAACCGGGTTGG
AAATATTTTGCTTCATTTCAAAGAACTGCATAGATGAAATTTTTTTTCCA
TGGGTCAATTTTGTCTTCGAAGATTGAAGAAACTTTTAACGAAAAATAAA
GTTCCCAGTTTTCTTCCTTTTTTCCCATTTTCAGTTTGAAGCTCATTTTT
ATTCATTTTCACGCTTTTAGCCTGAGACGTCCTATCTCATTTACACTGGG
TGACGAATACCCCATGCAAACAGTGCGACACAAACAGCCATATAAACAAA
ACTCAACATTCTCACAAAAGTTGTCTTTTTGATTTCCCAAACATTTGTCT
CAAGCGTTCCCTTCCACAATAATTTATGTAATTGCAATTGCGGTCAGTCC
ACAGTCGGCTTCAACATATACACGTGTTTTTATTTACGTGACCGAAGTGC
CTACTAAAACAATCCGGGGGTAAATAGCGAAGCAACACAGCAGATTATTC
GTAAATATCTTTTGGCATTGACAATCAAATATAATATATTATACTATATT
TCCTTAATTCAAAAATCAAAAATTCATTTTTCATTCGCGAAAAAATAAAA
ATAAAAGAATAATGAATTAATATTACATACTAAGACGCCCCCGTCTTTTA
CTCTCATTTAATTTCCAGTCTCGGCACGTGCAAAACGCCCGTCCGCCCAA
TATCCACCCAATCAGCTTAAATTCACTTTAATTGTCCTTTGACATTCAAA
AAATAGTATTTAAAAATTAGGAATTTATGATAATTACAAAAAACAAAAAG
TTTGATACTTCATTAGTGAAATATTCAATAAATTCCTGGTTTCAATTTTC
AGTGGGCGTTCTTCTAGGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065843-exon-scaffold_446-1575043694:92358..94028 | TCONS_00065843-exon-scaffold_446-1575043694:92358..94028 | Clytia hemisphaerica | exon |
| TCONS_00065843-exon-scaffold_446-1510915933:92358..94028 | TCONS_00065843-exon-scaffold_446-1510915933:92358..94028 | Clytia hemisphaerica | exon |
| TCONS_00065843-exon-scaffold_446-1491911889:92358..94028 | TCONS_00065843-exon-scaffold_446-1491911889:92358..94028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:92358..94028 - |
Blast
BLAST of TCONS_00065843 vs. Swiss-Prot (Human)
Match: GMFG (Glia maturation factor gamma OS=Homo sapiens GN=GMFG PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.504e-40 Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = 2
Query: 191 MAQNLKICEIDPELLAKVKKFRFRKEPNNAAVVMKIDIETSTVIEDESYEDVDIEELVSELPAHLPRYIALSYVKKHDDGRVSYPLIFVFISPSGIKPALQMTYAGSKTSLVNALGFTKVFELR 562
M+ +L +CE+DPEL K++KFRFRKE +NAA++MK+D + V+ +E ++++ EEL ELP PR++ SY HDDGRVSYPL F+F SP G KP QM YAGSK LV TKVFE+R
Sbjct: 1 MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIR 124
The following BLAST results are available for this feature:
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