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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065836 ID=TCONS_00065836|Name=TCONS_00065836|organism=Clytia hemisphaerica|type=transcript|length=1406bp
tttatatttcataaaaacaaaaaagaaaatttaaaagaaatggcATTGGT
TGAAACGTTGAAGAAAGTTGTTGACAAAACTATCGAAAACCGCAAGAATG
ACTTGAATGATATCAGTcaagaaatttggaaaaatcctGAACTAAGTTTC
AATGAGGTCAAAGCACATGAATGTTTAACAAACTTCCTTGAGAAAGAAGG
GTTCACAGTGTCAAGGAAAACTCCTTTGGAAACTTCATTCGTTGCAAAAT
ATGGAGATTGTACCGGAGGAATAAAAGTTGGAGTGATTTGTGAATATGAT
GCCTTACCTAAAATTGGACATGCTTGCGGTCATAATTTGATCGCTGAAGC
GGGAATCGGAGCTGCTTTAGCTCTCAAAGCTGCAATGGATTCGAGCAAAG
ACCTAAAAATTAACCTGATTGTTTACGGAACGCCTGCGGAAGAAGGGGGC
GGTGGAAAGTGTCTCATGCTGGAAAAAGGGGTATTCGATGAAGCAGATAT
TTGTATGATGTCGCATCCAACACCTGTGGAAATCTCAACTCCAATTTGGT
TGGCCAGGATACAATTGGATATTGTCTTTCATGGCAAAACAGCACACGCA
GCAGCGGCGCCATGGGAAGGAATCAACGCATTAGATGCCGCTGTAGCATG
TTATAATAACGTTAGTATGTTACGACAACAAATGAAACCAACTAATCGTA
TTCATTGTACTATTGTGGATGGAGGAGAAAGACCAAACATCATTCCTGAA
CGCGCCGAAATGTGTTACTATGTACGAAGTTTGAGTTTGAAGGACGCCGA
GGAACTGAGTGAGCGCGTTCGAGCGTGTGCTCACGGAGGAGCTCAGTCTA
CAGGTTGTACTGTGGATATCAAGGAACCAGCTCCTCGTTATGATGCTGTA
AGAACCAACCCCACCATGATTGGTTTGTACAAGAAACACGCGCAGAGTTA
TGGTATCAGTTTTGAAGGGGAAGACGAGTACGCGCAAAAGTTACTCGCTT
CCACTGATATGGGGAACGTGTCACAACATCGACCTTCTATTCATCCATGC
TTTAAGATTGAAACTACAGCAGCCAATCATACACATGCATTCACTGATGC
TACTGGTTCCCAAGACAACCAACCACCCACATTGAGCTCAGCTAAAAGCA
TGGCAATGACCGCTATTGAGTTGGCTTGTGATCCAAAGTTGATGATAAAG
GTCAAAgaagaatttgaaaagaaatgaaactaattttgctggttttcttt
atattttgtgATAATACGTTTCGCTacgtcatcatttttatttcaataaa
tttaCACAGTATTTATCATTTTATGCAGGGGAGAGGGTTAAGaaggataa
atattttaatataaatttaatcaattttgtagattttttatagaaatgga
GAGGag Run BLAST on NCBI transcript from alignment at scaffold_446:36266..38476- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065836 ID=TCONS_00065836|Name=TCONS_00065836|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at scaffold_446:36266..38476- (Clytia hemisphaerica)
TTTATATTTCATAAAAACAAAAAAGAAAATTTAAAAGAAATGGCATTGGT
TGAAACGTTGAAGAAAGTTGTTGACAAAACTATCGAAAACCGCAAGAATG
ACTTGAATGATATCAGTCAAGAAATTTGGAAAAATCCTGAACTAAGTTTC
AATGAGGTCAAAGCACATGAATGTTTAACAAACTTCCTTGAGAAAGAAGG
GTTCACAGTGTCAAGGAAAACTCCTTTGGAAACTTCATTCGTTGCAAAAT
ATGGAGATTGTACCGGAGGAATAAAAGTTGGAGTGATTTGTGAATATGAT
GCCTTACCTAAAATTGGACATGCTTGCGGTCATAATTTGATCGCTGAAGC
GGGAATCGGAGCTGCTTTAGGTAGGGAAGCTTTCATATTTCATATAAGAC
TTGTAAATTTGTTTCGAAATTAATTGACAATAAAAAATATTAAAAATTCT
CCCTTAATAGAACAGAGCTAATGTCTCAAAAGAAATAGTAATACCTAAAA
TGAGATCGTATAATGACTCTTTATTTATGTACTGTTTTCTAGCTCTCAAA
GCTGCAATGGATTCGAGCAAAGACCTAAAAATTAACCTGATTGTTTACGG
AACGCCTGCGGAAGAAGGGGGCGGTGGAAAGTGTCTCATGCTGGAAAAAG
GGGTATTCGATGAAGCAGATATTTGTATGATGTCGCATCCAACACCTGTG
GAAATCTCAACTCCAATTTGGTTGGCCAGGATACAATTGGATATTGTCTT
TCATGGTTTGTCCTAAAATTCTTGATATATCCGTATATGAAATCCTGGGT
TCTTGTTTTGCACCAATTTGGTGTGCAGTAAAGCAGCCCATTTTTCATTC
TTCGATTTGCATTAATCTTAGCATAAAGCGGTTGCTTTATATATTAGGGT
CTCTTCTCTTAGTTAAAAATTAAACGATATCCTTTTTCATCATTTCTCAA
GGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATCAACGCATT
AGATGCCGCTGTAGCATGTTATAATAACGTTAGTATGTTACGACAACAAA
TGAAACCAACTAATCGTATTCATTGTACTATTGTGGATGGAGGAGAAAGA
CCAAACATCATTCCTGAACGCGCCGAAATGTGTTACTATGTACGAAGTTT
GAGTTTGAAGGACGCCGAGGAACTGAGTGAGCGCGTTCGAGCGTGTGCTC
ACGGAGGAGCTCAGTCTACAGGTTTGTTTGCAGCCAATAAAGAAGTCACC
TCAAATAACATTAAATAAATCGTTATTCCTAAATCTAACTATAAACTCAA
GACTTGAAATAGCTTGAAGATGAATTACTTCTCTCTTTTGGATTTTTAGC
CATCGTTTTTCGTTTAATACACGTTTGTTTTTTTTATAAGAACAACTATA
TAAGAATGTAGGGCTTTGATGGCCAAAATTTTAAGAACGAGTTGAGAACT
CTAAAACACCCAATTTCTTAGGAAAATGGCCAAAAACGCTCACAAAATGG
TGAAAGTAAGAACATGTTAAGAACATTTTAAGGCTTAAAACTGAAAAACT
TAAGAACGTCCGAAGGCTTCAAAGATTTTGAATGCTCTTATAAAAAAAAT
GTGTATACTTACCTGACTAAATATCACCCTTGTTATTTACTTTGTTATTG
ATATATAGGTTGTACTGTGGATATCAAGGAACCAGCTCCTCGTTATGATG
CTGTAAGAACCAACCCCACCATGATTGGTTTGTACAAGAAACACGCGCAG
AGTTATGGTATCAGTTTTGAAGGGGAAGACGAGTACGCGCAAAAGTTACT
CGCTTCCACTGATATGGGGAACGTGTCACAACATCGACCTTCTATTCATC
CATGCTTTAAGATTGAAACTACAGCAGCCAATCATACACATGCATTCACT
GATGCTACTGGTTCCCAAGACAACCAACCACCCACATTGAGCTCAGCTAA
AAGCATGGCAATGACCGCTATTGAGTTGGCTTGTGATCCAAAGTTGATGA
TAAAGGTCAAAGAAGAATTTGAAAAGAAATGAAACTAATTTTGCTGGTTT
TCTTTATATTTTGTGATAATACGTTTCGCTACGTCATCATTTTTATTTCA
ATAAATTTACACAGTATTTATCATTTTATGCAGGGGAGAGGGTTAAGAAG
GATAAATATTTTAATATAAATTTAATCAATTTTGTAGATTTTTTATAGAA
ATGGAGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065836-exon-scaffold_446-1575043694:38107..38476 | TCONS_00065836-exon-scaffold_446-1575043694:38107..38476 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1575043694:37722..37934 | TCONS_00065836-exon-scaffold_446-1575043694:37722..37934 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1575043694:37256..37525 | TCONS_00065836-exon-scaffold_446-1575043694:37256..37525 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1575043694:36266..36818 | TCONS_00065836-exon-scaffold_446-1575043694:36266..36818 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1510915933:38107..38476 | TCONS_00065836-exon-scaffold_446-1510915933:38107..38476 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1510915933:37722..37934 | TCONS_00065836-exon-scaffold_446-1510915933:37722..37934 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1510915933:37256..37525 | TCONS_00065836-exon-scaffold_446-1510915933:37256..37525 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1510915933:36266..36818 | TCONS_00065836-exon-scaffold_446-1510915933:36266..36818 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1491911889:38107..38476 | TCONS_00065836-exon-scaffold_446-1491911889:38107..38476 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1491911889:37722..37934 | TCONS_00065836-exon-scaffold_446-1491911889:37722..37934 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1491911889:37256..37525 | TCONS_00065836-exon-scaffold_446-1491911889:37256..37525 | Clytia hemisphaerica | exon |
| TCONS_00065836-exon-scaffold_446-1491911889:36266..36818 | TCONS_00065836-exon-scaffold_446-1491911889:36266..36818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:36266..38476 - |
Blast
BLAST of TCONS_00065836 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 9.060e-88 Identity = 162/396 (40.91%), Postives = 234/396 (59.09%), Query Frame = 1
Query: 49 VETLKKVVDKTIENRKNDLNDISQEIWKNPELSFNEVKAHECLTNFLEKE----GFTVSRKTPLETSFVAKY--------GDCTGGIKVGVICEYDALPKIGHACGHNXXXXXXXXXXXXXXXXMDS--SKDLKINLIVYGTPAEEGGGGKCLMLEKGVFDEADICMMSHPTPVEISTPIWLARIQLDIVFHGKTAHAAAAPWEGINALDAAVACYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAEMCYYVRSLSLKDAEELSERVRACAHGGAQSTGCTVDIKEPAPRYDAVRTNPTMIGLYKKHAQSYGISFEGEDEYAQKLLASTDMGNVSQHRPSIHPCFKIETTAANHTHAFTDATGSQDNQPPTLSSAKSMAMTAIELACDPKLM 1194
+E LK + I+ L +S+ IW PEL++ E AH LT+F E+E + V L T+F A++ + +G +CEYDALP IGHACGHNLIAE G AAL ++ A++ + ++V GTPAEE GGGK ++E G F D+ M+HP+ + +A + + ++GK +H+A+ PWEG+NALDAAV YNN+S+ RQQMKPT R+H I +GG +PNIIP +E+ YY R+ S+K+ + L+++ C A ++GCTV+IK A Y V N ++ Y ++ + GI F ED STD GNVS P IHP F I + A NHT +T+A GSQ+ Q TL +AK++AMTA+++ P+L+
Sbjct: 20 LELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELL 415
The following BLAST results are available for this feature:
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