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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065832 ID=TCONS_00065832|Name=TCONS_00065832|organism=Clytia hemisphaerica|type=transcript|length=3575bpRun BLAST on NCBI protein sequence of TCONS_00065832-protein >TCONS_00065832-protein ID=TCONS_00065832-protein|Name=TCONS_00065832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp MSEAASPVRSSNIPESVALINLPNNQPQEPDDNDSGLDTGYDERITHRSIRun BLAST on NCBI transcript from alignment at scaffold_446:31062..44545- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065832 ID=TCONS_00065832|Name=TCONS_00065832|organism=Clytia hemisphaerica|type=transcript|length=13484bp|location=Sequence derived from alignment at scaffold_446:31062..44545- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_446:31062..44545- >TCONS_00065832 ID=TCONS_00065832|Name=TCONS_00065832|organism=Clytia hemisphaerica|type=CDS|length=11235bp|location=Sequence derived from alignment at scaffold_446:31062..44545- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065832 vs. Swiss-Prot (Human)
Match: SL9B2 (Sodium/hydrogen exchanger 9B2 OS=Homo sapiens GN=SLC9B2 PE=1 SV=2) HSP 1 Score: 341.273 bits (874), Expect = 1.154e-103 Identity = 220/477 (46.12%), Postives = 302/477 (63.31%), Query Frame = 3
Query: 213 PNHLNVVHRTPAFVKNCCPPRGRFGEYATRIIACIVIWAALYCVVGSSAWVGGNXXXXXXXXXXXXX--XXXXXXWKTQYFNFPALLGMLIVGFLLXXXXXXXXXXXXDSNWSSSLRQVALAVILLRSGLGLDIAALKRLRFTVLRLAFGPCITEAVTVAVMAHFLLGLPWLWAFQLGFIIGAVSPAVVVPSMLTLQLDGYGVEEGIPTLVMAASSCDDVLAISLFGVFLGVSFSEGNLLWNIFRGPLEIAMXXXXXXXXXXXXWYFPWKKAGNATANRSVXXXXXXXXXXXGSNQVNFPXXXXXXXXXXXXXXXYGWGEKEKVPIERVMGILWDIFQPLLFGLIGAEVSIQYLKPDLVGMGLAALGIGLVLRIGVTYFAVLGNSFSTKEKLFCTIAWLPKATVQAAIGSIPLDKARQVASKDPTDANNQAVEYGIQIVTLAVLAILITAPLGAIGISLTGPRFLS----QRKNEEL 1625
P N V R + CPP G T + +++WA ++ + GS GGNLF + +L A + + P+LLGML+ GFL++NI IN I WSSSLR +AL++IL+R+GLGLD ALK+L+ +RL+ GPCI EA T A++AH+LLGLPW W F LGF++GAVSPAVVVPSML LQ GYGVE+G+PTL+MAA S DD+LAI+ F LG++FS G+ ++N+ RG LE+ +G+ G ++G + YFP + R+ L+L + L +F S FPG+G L L + GW EK +E+++ + WDIFQPLLFGLIGAEVSI L+P+ VG+ +A +GI +++RI T+ V F+ KEK+F + AWLPKATVQAAIGS+ LD AR K D YG+ ++T+A L+ILITAP+G++ I L GPR L Q K+EE+
Sbjct: 63 PTEANHVQRLRQML--ACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFSSVHFGFPGSGGLCTLVMAFLAGMGW-TSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALDTARSHGEKQLED-------YGMDVLTVAFLSILITAPIGSLLIGLLGPRLLQKVEHQNKDEEV 529 The following BLAST results are available for this feature:
BLAST of TCONS_00065832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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