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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065830 ID=TCONS_00065830|Name=TCONS_00065830|organism=Clytia hemisphaerica|type=transcript|length=1479bp
AAGCATTGTTCTCACTGgccataaaatatttttttgttgccACAAAATAA
GTAGGTTTTGTCTTGGATTAAGGAAGGGAGTAAGTAGTCAGGGTTTTACT
TTGAGATTTCAGCGTTCACAATGAAAGAACAACTAAAACAGATCATTTGC
GAAGCCATAGACTCCAAGAAAGACGAACTAAACAATATTAGTCAAGAAAT
CTGGAAAAACCCTGAGCTTAGTTTTGAGGAATTTAAAGCACACAACTTTT
TGACGgaatttcttgaaaaagaaGGATTCTCAGTGTCGAGGAAAACTCCT
TTGGAAACTTCATTTATCGCAAAATATGGAGACTGTACCAGAGGAATCAA
AGTTGGAGTAATTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTT
GCGGTCATAACTTGATCGCTGAAGCGGGCATCGGAGCTGCTTTGGGGTTA
AAAGCTGCAATGGATTCGAACAAAGACCTAAAGATGAATCTTATTGTTTA
TGGCACACCCGCAGAGGAAGGTGGCAATGGGAAGTGTTTGATGATCGAAA
AGGGCGTTTTTGATGAAGCAGATATTTGTATGATGTCTCACCCTGCCCCT
TATGAAATTCCAAATCCATTATGGTTAGCTATTGATTCATATAGGGTCAT
TTTTAAAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATCA
ACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGTATGTTACGA
CAACAAATGAAACCAACTAATCGTATCCAATGTACTATTGTGGATGGAGG
AGAAAGACCCAACATCATTCCTGAACGCGCGGAAATGGTCTGGGATCTAC
GAACACAGAAAGATGAAGACTTAACAATATTACTTAAGCAATGGATGGAA
TGCGCCAAAGGAGCAGCAAAAAGTACAGGGTGTGAAGTTGAATTCATTAA
AGATTGTCTAACCTGTTTATCACTAAACACAAACCAAGTCATGATCGATC
TTtacatggaaaatgcaaaatcacTTGGTGTTCCTTTTGAAGATGACCAT
ATGAGAGAACTTTTACAAGCCTCGACTGATATGGGGAATGTGTCAGCAAT
GAAACCATCTATTCATCCatgtttcaaaataaaatcggAAGAAACAAACC
ATAATCATGGCTTTACAAAAGCCGCTGGATCTGAAGAAAGTCAGTTACCC
ACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTATTGATATTGTTTG
CGAGGAGGGACTTTTAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCAAAC
CTTCAGCCCTTTGAAGTAAAAGGGCTCATGAAGCAGAATTTGATCAGATT
TTTCACATGAAACTACTGAAAATTTTGCAATActtctttttaaagatttt
gaacaTGTAGCGATTTAtgtaataattttttcaaactttgctatttttag
tGATTACTTAACAGTACACAAAAAGTAAG Run BLAST on NCBI transcript from alignment at scaffold_446:31062..33343- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065830 ID=TCONS_00065830|Name=TCONS_00065830|organism=Clytia hemisphaerica|type=transcript|length=2282bp|location=Sequence derived from alignment at scaffold_446:31062..33343- (Clytia hemisphaerica)
AAGCATTGTTCTCACTGGCCATAAAATATTTTTTTGTTGCCACAAAATAA
GTAGGTTTTGTCTTGGATTAAGGAAGGGAGTAAGTAGTCAGGGTTTTACT
TTGAGATTTCAGCGTTCACAATGAAAGAACAACTAAAACAGATCATTTGC
GAAGCCATAGACTCCAAGAAAGACGAACTAAACAATATTAGTCAAGAAAT
CTGGAAAAACCCTGAGCTTAGTTTTGAGGAATTTAAAGCACACAACTTTT
TGACGGAATTTCTTGAAAAAGAAGGATTCTCAGTGTCGAGGAAAACTCCT
TTGGAAACTTCATTTATCGCAAAATATGGAGACTGTACCAGAGGAATCAA
AGTTGGAGTAATTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTT
GCGGTCATAACTTGATCGCTGAAGCGGGCATCGGAGCTGCTTTGGGTAAG
CAAAGGATTTCAATGTAATTTCTCCTCTCGTTAAAGTTTTAACTTGCCAT
GTAAATGGTATTTTCTCGATCAATGATAAAGCATTTGCTGAGAAATATTA
AATTTTGATGCTTCTTTCATACTAACTGGACATACTCAAAATCAATCTCG
TATCGTTTTCAGGGTTAAAAGCTGCAATGGATTCGAACAAAGACCTAAAG
ATGAATCTTATTGTTTATGGCACACCCGCAGAGGAAGGTGGCAATGGGAA
GTGTTTGATGATCGAAAAGGGCGTTTTTGATGAAGCAGATATTTGTATGA
TGTCTCACCCTGCCCCTTATGAAATTCCAAATCCATTATGGTTAGCTATT
GATTCATATAGGGTCATTTTTAAAGGTACGCCATTAGCTTCATTTTGATC
GAATCTTTTTTGAAAAAATAGACCTTTTCATAAATTACGTCACGAACATC
ACTTGCCTCGTTTTGAAATTATTGTCATGGTAATTAACTCCCAGTGGATT
TTATTAAAACTACTTTCTATTTATAAAAAAATAATTGAATGTCTCGAGGG
GCATAATCACCGTGGTAATTGTTTGAATACGAGGAAAGTGATATTCGTGA
TTTAATTTATAAAAAGGTCTACTGGCATCTCATGTTTAAAAAAATGCCTT
CTGGTGTATACTAGCAATATCTTGCTTTTGTCTAAACTTAGTTTTCTCTA
TTTTTTTCTCAAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGG
AATCAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGTATGT
TACGACAACAAATGAAACCAACTAATCGTATCCAATGTACTATTGTGGAT
GGAGGAGAAAGACCCAACATCATTCCTGAACGCGCGGAAATGGTCTGGGA
TCTACGAACACAGAAAGATGAAGACTTAACAATATTACTTAAGCAATGGA
TGGAATGCGCCAAAGGAGCAGCAAAAAGTACAGGTAGATTGTCATATCCT
TGCTCCCATTTCGGAAGATAATGAGTATAATGCTCATAGCATCGTCAACA
CTGGATGATTTTTGACAATTCATGATATTCATGACGTAATGTTTTCAAAC
TAGACAAAGGTTATATAAAATTTGCCCCTACTGGCAAGAACCGGAGTCTT
TCCGTAGAAAACATTACGTCATGAATATCAATGAATTGTATTTATAATCT
TCAAATCCACAAATTTGGATATGAACAGCTTCAAGAATTCAGTACAATAA
CATCTGTATCATCACTATTTGATTTTTATAGGGTGTGAAGTTGAATTCAT
TAAAGATTGTCTAACCTGTTTATCACTAAACACAAACCAAGTCATGATCG
ATCTTTACATGGAAAATGCAAAATCACTTGGTGTTCCTTTTGAAGATGAC
CATATGAGAGAACTTTTACAAGCCTCGACTGATATGGGGAATGTGTCAGC
AATGAAACCATCTATTCATCCATGTTTCAAAATAAAATCGGAAGAAACAA
ACCATAATCATGGCTTTACAAAAGCCGCTGGATCTGAAGAAAGTCAGTTA
CCCACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTATTGATATTGT
TTGCGAGGAGGGACTTTTAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCA
AACCTTCAGCCCTTTGAAGTAAAAGGGCTCATGAAGCAGAATTTGATCAG
ATTTTTCACATGAAACTACTGAAAATTTTGCAATACTTCTTTTTAAAGAT
TTTGAACATGTAGCGATTTATGTAATAATTTTTTCAAACTTTGCTATTTT
TAGTGATTACTTAACAGTACACAAAAAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065830-exon-scaffold_446-1575043694:32899..33343 | TCONS_00065830-exon-scaffold_446-1575043694:32899..33343 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1575043694:32519..32731 | TCONS_00065830-exon-scaffold_446-1575043694:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1575043694:31911..32180 | TCONS_00065830-exon-scaffold_446-1575043694:31911..32180 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1575043694:31062..31612 | TCONS_00065830-exon-scaffold_446-1575043694:31062..31612 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1510915933:32899..33343 | TCONS_00065830-exon-scaffold_446-1510915933:32899..33343 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1510915933:32519..32731 | TCONS_00065830-exon-scaffold_446-1510915933:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1510915933:31911..32180 | TCONS_00065830-exon-scaffold_446-1510915933:31911..32180 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1510915933:31062..31612 | TCONS_00065830-exon-scaffold_446-1510915933:31062..31612 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1491911889:32899..33343 | TCONS_00065830-exon-scaffold_446-1491911889:32899..33343 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1491911889:32519..32731 | TCONS_00065830-exon-scaffold_446-1491911889:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1491911889:31911..32180 | TCONS_00065830-exon-scaffold_446-1491911889:31911..32180 | Clytia hemisphaerica | exon |
| TCONS_00065830-exon-scaffold_446-1491911889:31062..31612 | TCONS_00065830-exon-scaffold_446-1491911889:31062..31612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:31062..33343 - |
Blast
BLAST of TCONS_00065830 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 288.5 bits (737), Expect = 3.346e-91 Identity = 170/407 (41.77%), Postives = 243/407 (59.71%), Query Frame = 1
Query: 127 EQLKQIICEAIDSKKDELNNISQEIWKNPELSFEEFKAHNFLTEFLEKE----GFSVSRKTPLETSFIAKY--------GDCTRGIKVGVICEYDALPGVGHACGHNXXXXXXXXXXXXXXXXMDS--NKDLKMNLIVYGTPAEEGGNGKCLMIEKGVFDEADICMMSHP----APYEIPNPLWLAIDSYRVIFKGKTAHAAAAPWEGINALDAAVACYNNVSMLRQQMKPTNRIQCTIVDGGERPNIIPERAEMVWDLRTQKDEDLTILLKQWMECAKGAAKSTGCEVEFIKDCLTCLSLNTNQVMIDLYMENAKSLGVPF-EDDHMRELLQASTDMGNVSAMKPSIHPCFKIKSEETNHNHGFTKAAGSEESQLPTLNSAKSMAMTAIDIVCEEGLLEKVQKSFE 1290
E LK E ID + L +S+ IW PEL++EE AH LT F E+E ++V L T+F A++ R + +G +CEYDALPG+GHACGHNLIAE G AALG++ A++ + ++V GTPAEE G GK +IE G F D+ M+HP A Y +P+ +A V + GK +H+A+ PWEG+NALDAAV YNN+S+ RQQMKPT R+ I +GG +PNIIP +E+++ R ++L +L K+ +C + AA ++GC VE ++ N+ + YMEN + LG+ F +D M STD GNVS + P IHP F I S NH +T+AAGS+E+Q TL +AK++AMTA+D++ + LLE +++ F+
Sbjct: 21 ELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAY-LPD---MAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFK 423
The following BLAST results are available for this feature:
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