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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065829 ID=TCONS_00065829|Name=TCONS_00065829|organism=Clytia hemisphaerica|type=transcript|length=1603bp
AGAAAGTAGCtagtcaaaacaaaaagttgatCAAATTTCAAGCATTGTTC
TCACTGgccataaaatatttttttgttgccACAAAATAAGTAGGTTTTGT
CTTGGATTAAGGAAGGGAGTAAGTAGTCAGGGTTTTACTTTGAGATTTCA
GCGTTCACAATGAAAGAACAACTAAAACAGATCATTTGCGAAGCCATAGA
CTCCAAGAAAGACGAACTAAACAATATTAGTCAAGAAATCTGGAAAAACC
CTGAGCTTAGTTTTGAGGAATTTAAAGCACACAACTTTTTGACGgaattt
cttgaaaaagaaGGATTCTCAGTGTCGAGGAAAACTCCTTTGGAAACTTC
ATTTATCGCAAAATATGGAGACTGTACCAGAGGAATCAAAGTTGGAGTAA
TTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTTGCGGTCATAAC
TTGATCGCTGAAGCGGGCATCGGAGCTGCTTTGGGGTTAAAAGCTGCAAT
GGATTCGAACAAAGACCTAAAGATGAATCTTATTGTTTATGGCACACCCG
CAGAGGAAGGTGGCAATGGGAAGTGTTTGATGATCGAAAAGGGCGTTTTT
GATGAAGCAGATATTTGTATGATGTCTCACCCTGCCCCTTATGAAATTCC
AAATCCATTATGGTTAGCTATTGATTCATATAGGGTCATTTTTAAAGgca
aaacagCACACGCAGCAGCGGCGCCATGGGAAGGAATCAACGCATTAGAT
GCCGCTGTAGCATGTTATAATAACGTTAGTATGTTACGACGACAAATGAA
ACCAACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACCAA
ACATCATCCCTGAACGCGCCGAAATATTGTATTGTACTCGTTCACAGAAA
GATAAAGACAATGAAAAGTTGATCGAAAAACTCAGAAGGTGCGCGGAAGG
AGCCGCACAAGCCACCGGCTGTACAATGGAGATGAAAAAAAGCGGACCAT
TTTACGCTGCTGTCAACACAAATCAAGTCATGATCGATCTTTACATCGGA
AATGCAAAATCACTTGGCGTTCCTTTTGAAGACGACCATATGAGAGAAAC
ATTCCAAGCCTCGACTGATATGGGAAATGTATCAGCAATGAAACCATCTA
TACACCctatatacaaaataaaatctGAAGATGTAAACCATAACCATGGA
TTTACAAAAGCCGCTGGATCTTCAGAAAGTCAGTTACCCACATTGAATTC
TGCAAAGAGTATGGCAATGACCGCTATTGATATCGTTTGTGAGAAAGGAC
TTTTAAATAAGATTCAGAAAAGCTTCAAAGAATCTTTACTTTCCTGATTG
AATGGTTTCCGATATGGTGGATTGGCGGCAACCCACGCTAAAGCTACAAA
GAAGGGGGAATTTTTTCCCATGGGTTCAGATGTCTCATTGCAAGATCCAT
GACACTGTCTGGCGAGACTCCTTAACCCAAAGCCTTATatgttaaaaaat
gtttcaatgtcTTCAGAGCTTCAGCATGCcggaagaaaatttttacttcg
aGTATCGGATATATTGTTTTATCGAGCTTGTGTAAGTGAAAAATGATACC
TGA Run BLAST on NCBI transcript from alignment at scaffold_446:28525..33382- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065829 ID=TCONS_00065829|Name=TCONS_00065829|organism=Clytia hemisphaerica|type=transcript|length=4858bp|location=Sequence derived from alignment at scaffold_446:28525..33382- (Clytia hemisphaerica)
AGAAAGTAGCTAGTCAAAACAAAAAGTTGATCAAATTTCAAGCATTGTTC
TCACTGGCCATAAAATATTTTTTTGTTGCCACAAAATAAGTAGGTTTTGT
CTTGGATTAAGGAAGGGAGTAAGTAGTCAGGGTTTTACTTTGAGATTTCA
GCGTTCACAATGAAAGAACAACTAAAACAGATCATTTGCGAAGCCATAGA
CTCCAAGAAAGACGAACTAAACAATATTAGTCAAGAAATCTGGAAAAACC
CTGAGCTTAGTTTTGAGGAATTTAAAGCACACAACTTTTTGACGGAATTT
CTTGAAAAAGAAGGATTCTCAGTGTCGAGGAAAACTCCTTTGGAAACTTC
ATTTATCGCAAAATATGGAGACTGTACCAGAGGAATCAAAGTTGGAGTAA
TTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTTGCGGTCATAAC
TTGATCGCTGAAGCGGGCATCGGAGCTGCTTTGGGTAAGCAAAGGATTTC
AATGTAATTTCTCCTCTCGTTAAAGTTTTAACTTGCCATGTAAATGGTAT
TTTCTCGATCAATGATAAAGCATTTGCTGAGAAATATTAAATTTTGATGC
TTCTTTCATACTAACTGGACATACTCAAAATCAATCTCGTATCGTTTTCA
GGGTTAAAAGCTGCAATGGATTCGAACAAAGACCTAAAGATGAATCTTAT
TGTTTATGGCACACCCGCAGAGGAAGGTGGCAATGGGAAGTGTTTGATGA
TCGAAAAGGGCGTTTTTGATGAAGCAGATATTTGTATGATGTCTCACCCT
GCCCCTTATGAAATTCCAAATCCATTATGGTTAGCTATTGATTCATATAG
GGTCATTTTTAAAGGTACGCCATTAGCTTCATTTTGATCGAATCTTTTTT
GAAAAAATAGACCTTTTCATAAATTACGTCACGAACATCACTTGCCTCGT
TTTGAAATTATTGTCATGGTAATTAACTCCCAGTGGATTTTATTAAAACT
ACTTTCTATTTATAAAAAAATAATTGAATGTCTCGAGGGGCATAATCACC
GTGGTAATTGTTTGAATACGAGGAAAGTGATATTCGTGATTTAATTTATA
AAAAGGTCTACTGGCATCTCATGTTTAAAAAAATGCCTTCTGGTGTATAC
TAGCAATATCTTGCTTTTGTCTAAACTTAGTTTTCTCTATTTTTTTCTCA
AGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATCAACGCAT
TAGATGCCGCTGTAGCATGTTATAATAACGTTAGTATGTTACGACAACAA
ATGAAACCAACTAATCGTATCCAATGTACTATTGTGGATGGAGGAGAAAG
ACCCAACATCATTCCTGAACGCGCGGAAATGGTCTGGGATCTACGAACAC
AGAAAGATGAAGACTTAACAATATTACTTAAGCAATGGATGGAATGCGCC
AAAGGAGCAGCAAAAAGTACAGGTAGATTGTCATATCCTTGCTCCCATTT
CGGAAGATAATGAGTATAATGCTCATAGCATCGTCAACACTGGATGATTT
TTGACAATTCATGATATTCATGACGTAATGTTTTCAAACTAGACAAAGGT
TATATAAAATTTGCCCCTACTGGCAAGAACCGGAGTCTTTCCGTAGAAAA
CATTACGTCATGAATATCAATGAATTGTATTTATAATCTTCAAATCCACA
AATTTGGATATGAACAGCTTCAAGAATTCAGTACAATAACATCTGTATCA
TCACTATTTGATTTTTATAGGGTGTGAAGTTGAATTCATTAAAGATTGTC
TAACCTGTTTATCACTAAACACAAACCAAGTCATGATCGATCTTTACATG
GAAAATGCAAAATCACTTGGTGTTCCTTTTGAAGATGACCATATGAGAGA
ACTTTTACAAGCCTCGACTGATATGGGGAATGTGTCAGCAATGAAACCAT
CTATTCATCCATGTTTCAAAATAAAATCGGAAGAAACAAACCATAATCAT
GGCTTTACAAAAGCCGCTGGATCTGAAGAAAGTCAGTTACCCACATTGAA
TTCAGCAAAGAGTATGGCAATGACCGCTATTGATATTGTTTGCGAGGAGG
GACTTTTAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCAAACCTTCAGCC
CTTTGAAGTAAAAGGGCTCATGAAGCAGAATTTGATCAGATTTTTCACAT
GAAACTACTGAAAATTTTGCAATACTTCTTTTTAAAGATTTTGAACATGT
AGCGATTTATGTAATAATTTTTTCAAACTTTGCTATTTTTAGTGATTACT
TAACAGTACACAAAAAGTAAGGGTTATAATGGAATGAAGTGAAATGCTAG
CTTGTTCATGAGACTAGCTCCTTTTTTCTTGACGAATATTTTTTAGAGCG
CCACAAAAAAAGTCTATCACTTGACTTGACTGATTGTTACATGGGTGAAA
TTGACTGTATCTATTTTAGGGTAAAAATGAAAGAAAAACTAAAACAGATC
ATTTGCGATACCATAGATTCCAAGAAGGTTGAACTAAACAATATTAGTCA
AGAGATTCTGAAAAATCCTGAGTTGAATTTCAAAGAATTCAAAGCACATG
CTTTGCTGACGTCATACCTCGAAAAGGAAGGGTTTGAAGTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAAGCGCCGTTT
CTACCAAAACGGACGGACAGACAGCGGAAGGATGAGGACGGAAAGTTGCA
AATGAAAGGCCCTATCGCTAGCGCTGGGCCAATAAAAGTTGGAGTGATTT
GTGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAATTTG
ATCGCTGAAGCGGGAATCGGAGCTGCTTTAGGTAATGAATTATATCTTCC
AGTGTGAAAAATATATCAAAACGGCGCTGTTTTAGTCCGACTCTCAGAAC
TATACTATACTTCTTAAAAGAAACTTTTTCGATGGTGAGTAGAAGTTAAT
CACTATCTAAAGTGGATTAATTTTGGCATTGATTTAATTCAGTGATTTGG
CTAAAATGCAATTTTTGGTGGGTTTTTGTTGAATGAATTTAAAAAGTTTG
TTCGTGCGTTTAAAAATGCTGTGTAAGCAAAAGATATGAGTTACTTTAAA
TGACAACCTTTATTTATGACATATCTTCTTCCCTACTCCAGGATTGAAAG
CAGTGATTGATTCAAAACCTGGTTGTAATTTCCACTTGATCGTTTATGGA
ACGCCAGCGGAAGAAGGGGGCGGTGGAAAGTGTTTGATGATCGAAAAGGG
CGTTTTTGATGAAGCAGATATTTGTATGATGTCTCATCCTGCGCCATATG
AAATTCCAAATCCGATTTGGTTAGCTAGTTCTCAATATAGAATTGTTTTC
ACTGGTATGAAATTTCTTTTAAATTTTTTGTTAAATCACAGATTTTTTCA
TTTTATTGCTTCAAATAAAATTTCATTTTGAGTGCATTTTCATATACTTC
CTAAGGCACTGAGTTTAAACCATATTGTTATCCTTTCTTTATTAATCTTT
CCGGTTTTCAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAA
TCAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGTATGTTA
CGACGACAAATGAAACCAACTAATCGTATTCATTGCACTATTGTGGATGG
AGGAGAAAGACCAAACATCATCCCTGAACGCGCCGAAATATTGTATTGTA
CTCGTTCACAGAAAGATAAAGACAATGAAAAGTTGATCGAAAAACTCAGA
AGGTGCGCGGAAGGAGCCGCACAAGCCACCGGTATCATATTTTGAACATT
TTCCAGACCCATTTTTTGATTTATCTTGAACACATTTTGAAATAAATAAG
TTTTGGTTTGTAAAAAAATCATAAGTAGGGGATAGTGGGTCATCCAAATT
GAAATATTATAGCTGGAATTTTTAATTAGGTTTTGTGTATTTTCTGAATT
ATGACAACATCAAGCTAATGCATTTGTTTCGCCTCACGTAGTCGAAAACA
TCTTAAGCTTTTTTTCGGATCACTCGTTACACATTGCGAATTTCCTTCAT
ATTGGTCAACACGAAACACTAAAATTGCAACTTTAACATAGAATACAAAA
ACATTTTTTTTCGCTTTTTCAGGCTGTACAATGGAGATGAAAAAAAGCGG
ACCATTTTACGCTGCTGTCAACACAAATCAAGTCATGATCGATCTTTACA
TCGGAAATGCAAAATCACTTGGCGTTCCTTTTGAAGACGACCATATGAGA
GAAACATTCCAAGCCTCGACTGATATGGGAAATGTATCAGCAATGAAACC
ATCTATACACCCTATATACAAAATAAAATCTGAAGATGTAAACCATAACC
ATGGATTTACAAAAGCCGCTGGATCTTCAGAAAGTCAGTTACCCACATTG
AATTCTGCAAAGAGTATGGCAATGACCGCTATTGATATCGTTTGTGAGAA
AGGACTTTTAAATAAGATTCAGAAAAGCTTCAAAGAATCTTTACTTTCCT
GATTGAATGGTTTCCGATATGGTGGATTGGCGGCAACCCACGCTAAAGCT
ACAAAGAAGGGGGAATTTTTTCCCATGGGTTCAGATGTCTCATTGCAAGA
TCCATGACACTGTCTGGCGAGACTCCTTAACCCAAAGCCTTATATGTTAA
AAAATGTTTCAATGTCTTCAGAGCTTCAGCATGCCGGAAGAAAATTTTTA
CTTCGAGTATCGGATATATTGTTTTATCGAGCTTGTGTAAGTGAAAAATG
ATACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065829-exon-scaffold_446-1575043694:32899..33382 | TCONS_00065829-exon-scaffold_446-1575043694:32899..33382 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1575043694:32519..32731 | TCONS_00065829-exon-scaffold_446-1575043694:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1575043694:29502..29771 | TCONS_00065829-exon-scaffold_446-1575043694:29502..29771 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1575043694:28525..29160 | TCONS_00065829-exon-scaffold_446-1575043694:28525..29160 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1510915933:32899..33382 | TCONS_00065829-exon-scaffold_446-1510915933:32899..33382 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1510915933:32519..32731 | TCONS_00065829-exon-scaffold_446-1510915933:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1510915933:29502..29771 | TCONS_00065829-exon-scaffold_446-1510915933:29502..29771 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1510915933:28525..29160 | TCONS_00065829-exon-scaffold_446-1510915933:28525..29160 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1491911889:32899..33382 | TCONS_00065829-exon-scaffold_446-1491911889:32899..33382 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1491911889:32519..32731 | TCONS_00065829-exon-scaffold_446-1491911889:32519..32731 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1491911889:29502..29771 | TCONS_00065829-exon-scaffold_446-1491911889:29502..29771 | Clytia hemisphaerica | exon |
| TCONS_00065829-exon-scaffold_446-1491911889:28525..29160 | TCONS_00065829-exon-scaffold_446-1491911889:28525..29160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_446 | supercontig | scaffold_446:28525..33382 - |
Blast
BLAST of TCONS_00065829 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 290.041 bits (741), Expect = 2.533e-91 Identity = 174/410 (42.44%), Postives = 244/410 (59.51%), Query Frame = 1
Query: 166 EQLKQIICEAIDSKKDELNNISQEIWKNPELSFEEFKAHNFLTEFLEKE----GFSVSRKTPLETSFIAKY--------GDCTRGIKVGVICEYDALPGVGHACGHNXXXXXXXXXXXXXXXXMDS--NKDLKMNLIVYGTPAEEGGNGKCLMIEKGVFDEADICMMSHP----APYEIPNPLWLAIDSYRVIFKGKTAHAAAAPWEGINALDAAVACYNNVSMLRRQMKPTNRIHCTIVDGGERPNIIPERAEILYCTRSQKDKDNEKLIEKLRRCAEGAAQATGCTMEMKKSGPFYAAVNTNQVMIDLYIGNAKSLGVPF-EDDHMRETFQASTDMGNVSAMKPSIHPIYKIKSEDVNHNHGFTKAAGSSESQLPTLNSAKSMAMTAIDIVCEKGLLNKIQKSFKESL 1338
E LK E ID + L +S+ IW PEL++EE AH LT F E+E ++V L T+F A++ R + +G +CEYDALPG+GHACGHNLIAE G AALG++ A++ + ++V GTPAEE G GK +IE G F D+ M+HP A Y +P+ +A V + GK +H+A+ PWEG+NALDAAV YNN+S+ R+QMKPT R+H I +GG +PNIIP +E++Y R+ K+ + L +K C AA A+GCT+E+K Y V N+ + Y+ N + LG+ F +D M STD GNVS + P IHP + I S +NH +T+AAGS E+Q TL +AK++AMTA+D++ + LL I++ FK L
Sbjct: 21 ELLKLRSAECIDEAAERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAY-LPD---MAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
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