TCONS_00065828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065828
Unique NameTCONS_00065828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065828 ID=TCONS_00065828|Name=TCONS_00065828|organism=Clytia hemisphaerica|type=transcript|length=491bp
TCCAAGAAAGATGAATTAAACAACATTAGTCAAGAAATATGGAAAAATCC
TGAGTTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTCTTACC
TCGAGAAAGAAGGGTTTGAAGTAGCAAAGAGCACTCCTTTGGAAACTTCA
TTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTGATTTG
TGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAACTTGA
TCGCTGAAGCGGGGATCGGAGCAGCATTAGGTCTCAAAGCAGTAATTGAT
TCAAAACCTGATTGTGATTTTAATTTGATCGTTTATGGAACGCCAGCAGA
AGAAGGGGgcggtggaaaatgtttgatgaTCGAGAAAGGCGTTNAGGAAT
AAAAGTTGGAGTGATTTGTGAATATGATGCCTTACCTGGAGTTGGACATG
CTTGCGGTCATAACTTGATCGCTGAAGCGGGCATCGGAGCT
Run BLAST on NCBI

protein sequence of TCONS_00065828-protein

>TCONS_00065828-protein ID=TCONS_00065828-protein|Name=TCONS_00065828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
SKKDELNNISQEIWKNPELNFEEFKAHALLTSYLEKEGFEVAKSTPLETS
FIARYGKKEGIKVGVICEYDALPGVGHACGHNLIAEAGIGAALGLKAVID
SKPDCDFNLIVYGTPAEEGGGGKCLMIEKGVXE
Run BLAST on NCBI

transcript from alignment at scaffold_446:27660..28347-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065828 ID=TCONS_00065828|Name=TCONS_00065828|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_446:27660..28347- (Clytia hemisphaerica)
TCCAAGAAAGATGAATTAAACAACATTAGTCAAGAAATATGGAAAAATCC
TGAGTTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTCTTACC
TCGAGAAAGAAGGGTTTGAAGTAGCAAAGAGCACTCCTTTGGAAACTTCA
TTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTGATTTG
TGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAACTTGA
TCGCTGAAGCGGGGATCGGAGCAGCATTAGGTAAGATCAACTCACAAATG
ATTATTGATTAGTAAAGATTGAGAATAGCTTGAAAAATATTTTTCATTCT
TTTTACTACCGTAAATATTGAATTATTGTTGACGCAGTTTGGCTTTAGAC
TGCAAACTTTCAAATCTTTTTTGAAGGAGTAAAGGCAAAGATTATTGGCT
TTAATTTCTACTCATCGCCCACTCTAGGTCTCAAAGCAGTAATTGATTCA
AAACCTGATTGTGATTTTAATTTGATCGTTTATGGAACGCCAGCAGAAGA
AGGGGGCGGTGGAAAATGTTTGATGATCGAGAAAGGCGTTNAGGAATAAA
AGTTGGAGTGATTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTT
GCGGTCATAACTTGATCGCTGAAGCGGGCATCGGAGCT

Coding sequence (CDS) from alignment at scaffold_446:27660..28347-

>TCONS_00065828 ID=TCONS_00065828|Name=TCONS_00065828|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_446:27660..28347- (Clytia hemisphaerica)
GTCTCAAAGCAGTAATTGATTCAAAACCTGATTGTGATTTTAATTTGATC
GTTTATGGAACGCCAGCAGAAGAAGGGGGCGGTGGAAAATGTTTGATGAT
CGAGAAAGGCGTTNAGGAATAATCCAAGAAAGATGAATTAAACAACATTA
GTCAAGAAATATGGAAAAATCCTGAGTTGAATTTCGAAGAATTTAAAGCA
CATGCCTTGCTGACGTCTTACCTCGAGAAAGAAGGGTTTGAAGTAGCAAA
GAGCACTCCTTTGGAAACTTCATTTATTGCTCGTTATGGAAAAAAAGAAG
GAATAAAAGTTGGAGTGATTTGTGAATATGATGCATTACCTGGAGTTGGA
CATGCTTGCGGTCATAACTTGATCGCTGAAGCGGGGATCGGAGCAGCATT
AGGTCTCAAAGCAGTAATTGATTCAAAACCTGATTGTGATTTTAATTTGA
TCGTTTATGGAACGCCAGCAGAAGAAGGGGGCGGTGGAAAATGTTTGATG
ATCGAGAAAGGCGTTNAGGAATAATCCAAGAAAGATGAATTAAACAACAT
TAGTCAAGAAATATGGAAAAATCCTGAGTTGAATTTCGAAGAATTTAAAG
CACATGCCTTGCTGACGTCTTACCTCGAGAAAGAAGGGTTTGAAGTAGCA
AAGAGCACTCCTTTGGAAACTTCATTTATTGCTCGTTATGGAAAAAAAGA
AGGAATAAAAGTTGGAGTGATTTGTGAATATGATGCATTACCTGGAGTTG
GACATGCTTGCGGTCATAACTTGATCGCTGAAGCGGGGATCGGAGCAGCA
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041240XLOC_041240Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065828-proteinTCONS_00065828-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065828-exon-scaffold_446-1575043694:28068..28347TCONS_00065828-exon-scaffold_446-1575043694:28068..28347Clytia hemisphaericaexon
TCONS_00065828-exon-scaffold_446-1575043694:27660..27870TCONS_00065828-exon-scaffold_446-1575043694:27660..27870Clytia hemisphaericaexon
TCONS_00065828-exon-scaffold_446-1510915933:28068..28347TCONS_00065828-exon-scaffold_446-1510915933:28068..28347Clytia hemisphaericaexon
TCONS_00065828-exon-scaffold_446-1510915933:27660..27870TCONS_00065828-exon-scaffold_446-1510915933:27660..27870Clytia hemisphaericaexon
TCONS_00065828-exon-scaffold_446-1491911889:28068..28347TCONS_00065828-exon-scaffold_446-1491911889:28068..28347Clytia hemisphaericaexon
TCONS_00065828-exon-scaffold_446-1491911889:27660..27870TCONS_00065828-exon-scaffold_446-1491911889:27660..27870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:27660..28347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.6869	14.8549	31.3712	31.9856	0.750585	1.12827	16.3573	13.6335	19.7801	15.0486	12.4416	13.8658	14.3433	15.2889	12.9389	16.4558	4.46796	5.83976	4.77329	5.54521	6.05318	7.5943	13.1069	10.7238	17.7989	11.3014	4.48086	3.49837	8.8988	6.0369
Blast
[Close]
BLAST of TCONS_00065828 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.327e-18
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 1 
Query:   10 DELNNISQEIWKNPELNFEEFKAHALLTSYLEKE----GFEVAKSTPLETSFIARYGKKEG---------IKVGVICEYDALPGVGHACGHNXXXXXXXXXXXXXXXXXD--SKPDCDFNLIVYGTPAEEGGGGKCLMIEKGV 393
            + L  +S+ IW  PEL +EE  AH +LT + E+E     + V     L T+F A +   E          + +G +CEYDALPG+GHACGHNLIAE G  AALG++  ++   +P     ++V GTPAEE GGGK  +IE G 
Sbjct:   36 ERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVRGALEGLPRPPPPVKVVVLGTPAEEDGGGKIDLIEAGA 178
The following BLAST results are available for this feature:
BLAST of TCONS_00065828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D22.327e-1842.66Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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