TCONS_00065827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065827
Unique NameTCONS_00065827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065827 ID=TCONS_00065827|Name=TCONS_00065827|organism=Clytia hemisphaerica|type=transcript|length=312bp
TCCAAGAAAGATGAATTAAACAACATTAGTCAAGAAATATGGAAAAATCC
TGAGTTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTCTTACC
TCGAGAAAGAAGGGTTTGAAGTAGCAAAGAGCACTCCTTTGGAAACTTCA
TTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTGATTTG
TGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAACTTGA
TCGCTGAAGCGGGGATCGGAGCAGCATTAGGTCTCAAAGCAGTGATTGAT
TCAAAACCTGGT
Run BLAST on NCBI

transcript from alignment at scaffold_446:27419..28347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065827 ID=TCONS_00065827|Name=TCONS_00065827|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at scaffold_446:27419..28347- (Clytia hemisphaerica)
TCCAAGAAAGATGAATTAAACAACATTAGTCAAGAAATATGGAAAAATCC
TGAGTTGAATTTCGAAGAATTTAAAGCACATGCCTTGCTGACGTCTTACC
TCGAGAAAGAAGGGTTTGAAGTAGCAAAGAGCACTCCTTTGGAAACTTCA
TTTATTGCTCGTTATGGAAAAAAAGAAGGAATAAAAGTTGGAGTGATTTG
TGAATATGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAACTTGA
TCGCTGAAGCGGGGATCGGAGCAGCATTAGGTAAGATCAACTCACAAATG
ATTATTGATTAGTAAAGATTGAGAATAGCTTGAAAAATATTTTTCATTCT
TTTTACTACCGTAAATATTGAATTATTGTTGACGCAGTTTGGCTTTAGAC
TGCAAACTTTCAAATCTTTTTTGAAGGAGTAAAGGCAAAGATTATTGGCT
TTAATTTCTACTCATCGCCCACTCTAGGTCTCAAAGCAGTAATTGATTCA
AAACCTGATTGTGATTTTAATTTGATCGTTTATGGAACGCCAGCAGAAGA
AGGGGGCGGTGGAAAATGTTTGATGATCGAGAAAGGCGTTNAGGAATAAA
AGTTGGAGTGATTTGTGAATATGATGCCTTACCTGGAGTTGGACATGCTT
GCGGTCATAACTTGATCGCTGAAGCGGGCATCGGAGCTGCTTTAGGTAGG
TAAGATCAACTCACAAAGGATTATTGATTAATAAAGATTGAGAATAGCTT
GAAAAATATTTTTCATTCTTTTTACTACTGTAAATATTGAATTATTGTTG
ATGCAGGTTGGCTTTAGACTACAAACTTTCAAATCTTTTTTGGAGGGTAT
AAAGGCAAAGATTTTTGGCTTAAATTTCTACTCATCGCCCACTCTAGGTC
TCAAAGCAGTGATTGATTCAAAACCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041240XLOC_041240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065827-exon-scaffold_446-1575043694:28068..28347TCONS_00065827-exon-scaffold_446-1575043694:28068..28347Clytia hemisphaericaexon
TCONS_00065827-exon-scaffold_446-1575043694:27419..27450TCONS_00065827-exon-scaffold_446-1575043694:27419..27450Clytia hemisphaericaexon
TCONS_00065827-exon-scaffold_446-1510915933:28068..28347TCONS_00065827-exon-scaffold_446-1510915933:28068..28347Clytia hemisphaericaexon
TCONS_00065827-exon-scaffold_446-1510915933:27419..27450TCONS_00065827-exon-scaffold_446-1510915933:27419..27450Clytia hemisphaericaexon
TCONS_00065827-exon-scaffold_446-1491911889:28068..28347TCONS_00065827-exon-scaffold_446-1491911889:28068..28347Clytia hemisphaericaexon
TCONS_00065827-exon-scaffold_446-1491911889:27419..27450TCONS_00065827-exon-scaffold_446-1491911889:27419..27450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:27419..28347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.33684	10.3561	8.92111	8.61291	3.90226	3.42347	23.8235	28.0778	8.8055	8.65686	10.1467	10.6894	11.1656	5.07322	10.4278	15.0542	3.17766	4.35855	7.58935	2.78112	1.50619	0.861394	0	5.03718	18.7786	18.1709	1.56612	1.54701	1.8875	6.35253
Blast
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BLAST of TCONS_00065827 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.674e-16
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   10 DELNNISQEIWKNPELNFEEFKAHALLTSYLEKE----GFEVAKSTPLETSFIARYGKKEG---------IKVGVICEYDALPGVGHACGHN 246
            + L  +S+ IW  PEL +EE  AH +LT + E+E     + V     L T+F A +   E          + +G +CEYDALPG+GHACGHN
Sbjct:   36 ERLGALSRAIWSQPELAYEEHHAHRVLTHFFEREPPAASWAVQPHYQLPTAFRAEWEPPEARAPSATPRPLHLGFLCEYDALPGIGHACGHN 127
The following BLAST results are available for this feature:
BLAST of TCONS_00065827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P20D27.674e-1640.22Peptidase M20 domain-containing protein 2 OS=Homo ... [more]
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